Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| KY806296 | GII.2 | |
|
|---|---|---|---|
| GII.P16 |
ORF1: 1..1065
ORF2: 1046..2674
ORF3: 2674..3453
LOCUS KY806296 3498 bp RNA linear VRL 02-SEP-2017
DEFINITION Norovirus Hu/JSYZ201701-1/CHN RNA-dependent RNA polymerase gene,
partial cds; and capsid protein and minor structural protein genes,
complete cds.
ACCESSION KY806296
VERSION KY806296.1
KEYWORDS .
SOURCE Norovirus Hu/JSYZ201701-1/CHN
ORGANISM Norovirus Hu/JSYZ201701-1/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3498)
AUTHORS Fu,J.G., Ai,J., Bao,C.J., Huo,X. and Xing,Z.
TITLE a new GII.P16/GII.2 norovirus variant
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3498)
AUTHORS Fu,J.G., Ai,J., Bao,C.J., Huo,X. and Xing,Z.
TITLE Direct Submission
JOURNAL Submitted (20-MAR-2017) Department of Acute Infectious Disease
Control and Prevention, Jiangsu Provincial Centre for Disease
Control and Prevention, Jiangsu Rd, 172, Nanjing, Jiangsu 210009,
China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3498
/organism="Norovirus Hu/JSYZ201701-1/CHN"
/mol_type="genomic RNA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:2029513"
/country="China"
/collection_date="05-Jan-2017"
CDS <1..1065
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="ASV60357.1"
/translation="MTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMIRCARSFG
GLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLAAA
LEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSIAHWLL
TLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGLKPTRPDK
TEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPNETMIP
HSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRWMRFSDL
STWEGDRNLAPNFVNEDGVE"
CDS 1046..2674
/codon_start=1
/product="capsid protein"
/protein_id="ASV60358.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
CDS 2674..3453
/codon_start=1
/product="minor structural protein"
/protein_id="ASV60359.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGILTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPNSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GPSHGTVSSKSTRSTSLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 atgacaccag tgtacacagc agcactcaag gacgagctag tcaagactga gaaaatctat
61 ggaaagatca agaagagact gctctggggc tctgacttgt ccaccatgat ccggtgcgct
121 aggtcatttg gtgggcttat ggacgagatg aaggcacact gcatatcact cccagtccga
181 gttggcatga atatgaatga agatggccca ataatatttg agaaacattc cagatataaa
241 tatcactatg atgcagacta ctctcgttgg gattcaacac aacagagggc agtactagca
301 gcagccttgg aaatcatggt cagattctct gcagaaccac aattggcaca aatagtcgct
361 gaggatctgc tggcccctag tgtagtagat gtaggagact ttaaaattac aataaatgaa
421 gggctccctt ctggtgtgcc atgcacttct caatggaact ccatcgcaca ctggctgcta
481 actctctgtg ccttgtctga agtcaccaaa ctgtcccctg acattataca ggcaaattcc
541 atgttctcat tttacggtga tgacgagatt gtcagcaccg acataaaatt ggaccctgaa
601 cagttaaccg ccaaattgaa ggagtacggc ctgaaaccaa cccgcccaga caaaaccgag
661 ggacccctga ttatcagtga agatttgaac ggtctcactt tcctccgaag gacggtgact
721 cgtgacccag ctggctggtt tggaaaactg gaccaaagct caattttgag gcagatgtac
781 tggactagag gaccaaatca tgaagacccc aatgagacaa tgatacccca ttctcaaaga
841 cccatacagc tcatggcact gcttggtgaa gcctctcttc acggaccctc tttctacagt
901 aaaatcagta aattggtcat aactgaactc aaagaaggtg ggatggactt ttacgtgcca
961 aggcaggaac ccatgttcag gtggatgagg ttttctgact tgagcacgtg ggagggcgat
1021 cgcaatctgg ctcccaattt tgtgaatgaa gatggcgtcg aatgacgccg ctccatctac
1081 tgatggtgca gccggcctcg tgccagaaag taacaatgag gtcatggctc ttgaacccgt
1141 ggctggtgcc gccttggcag ccccggtcac cggtcaaaca aatattatag acccttggat
1201 tagagcaaat tttgtccagg cccccaatgg tgaatttaca gtctctcccc gaaatgcccc
1261 tggtgaagtg ctactgaatc tagagttggg tccagaatta aatccttatc tggcacattt
1321 agcaagaatg tacaatgggt atgccggtgg gatggaggtg caggtcatgt tggctgggaa
1381 cgcgttcaca gccggcaagt tggtcttcgc cgccgtgcca cctcacttcc cagttgaaaa
1441 ccttagccca cagcaaatca ccatgttccc tcatgtgatc atagatgtga gaaccttgga
1501 acctgttttg ttaccactcc ctgatgttag gaataatttc ttccattata atcagaaaga
1561 tgatcccaag atgagaattg tggctatgct ttataccccc ctcaggtcta atggttcagg
1621 tgatgatgtg tttacagtct cctgcagagt gttgactaga ccttcccctg actttgactt
1681 cacatacctg gtgccaccaa cagtggagtc taaaacaaaa ccattcaccc tcccaatcct
1741 cacacttggg gaactttcca attccaggtt cccagtgtcc atagaccaga tgtacaccag
1801 ccctaatgaa gttatatcag tgcagtgtca aaatggtagg tgcacactgg acggggagct
1861 ccaggggaca acacaactcc aagtcagtgg catttgtgct ttcaaaggtg aagtgaccgc
1921 ccacttgcat gacaatgatc acctatataa tgttaccatc acaaacttga atgggtcccc
1981 ttttgatccc tccgaggata tccctgcccc tctgggtgtg cctgacttcc agggaagggt
2041 ttttggtatc atctcccaaa gagacaaaca caatagtcct gggcataatg aaccagcaaa
2101 caggggacac gacgctgtgg tccccactta cacagcacag tacactccaa aactgggaca
2161 aattcaaatt ggcacatggc agactgacga ccttacagtc aaccaaccag tcaaattcac
2221 cccagttgga ctcaatgaca ctgaacattt taaccaatgg gtggtcccca ggtatgctgg
2281 tgccctaaac ctcaatacaa accttgcccc ttctgttgct ccagtatttc caggagagcg
2341 cctgctcttc ttcagatcat acattcccct caagggcggt tatggaaacc cagccattga
2401 ttgcctacta ccacaagagt gggtgcaaca cttctatcag gaagcagccc cttcaatgag
2461 tgaggtggcc ctcgtcagat acatcaaccc ggacactggt cgggcactgt ttgaggccaa
2521 gctccacaga gctggtttca tgacagtctc gagcaacacc agtgccccgg tggttgtgcc
2581 tgccaacgga tacttcagat ttgattcttg ggtgaaccaa ttctattctc tcgcccccat
2641 gggaactggg aatgggcgta gaagggttca ataatggctg gagcttttgt agctggtctt
2701 gcaggggacg tgctcagcaa tgggcttagt tcattgatta atgcaggtgc taatgcaata
2761 aatcagaggg cagagtttga ttttaatcag aaattgcagc aaaattcttt taatcatgat
2821 aaggagatgt tgcaggctca gattcaggca actaagcagc tgcaggcaga catgatggct
2881 ataaaacaag ggatcttgac cgctggcggc ttttcccctg ctgatgcagc cagaggtgct
2941 gtaaacgcgc ccatgacaca agcgctggat tggaatggta caaggtattg ggcaccaaac
3001 tccatgagga ccacatctta ttctggaaaa ttcacatcaa ccgccccagt gaggcaggcc
3061 gacttccagc acacccaaag ccggccttcg agtggctcct ctgtgtcttc ctttgccact
3121 cagtcttcaa ggccaactct gaccacaacc actggtccct cacatggcac agtctcatca
3181 aaatcaactc gcagcacaag cctctcccaa tcaacggtct ctagagctac atctaggact
3241 ggtgagtggg ttagagatca aaatagaaat ttggaaccct acatgcatgg tgccttacag
3301 acagcctttg tcaccccacc ttccagcagg gcatctgacg ggacagtctc aaccgtcccg
3361 aaaggtgttt tggactcctg gacacctgcg tttaacaccc gcaggcagcc gctttttgca
3421 cacctccgta agagggggga gtcacaagct tagtgaaaag gtgaaaattt atttaggatg
3481 aattgatttt acctttta
//