Typing tool
|
Complete norovirus genomes
KY806293 | GII.2 | ||
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GII.P16 |
ORF1: 1..1065 ORF2: 1046..2674 ORF3: 2674..3453LOCUS KY806293 3498 bp RNA linear VRL 02-SEP-2017 DEFINITION Norovirus Hu/JSWX201702-2/CHN RNA-dependent RNA polymerase gene, partial cds; and capsid protein and minor structural protein genes, complete cds. ACCESSION KY806293 VERSION KY806293.1 KEYWORDS . SOURCE Norovirus Hu/JSWX201702-2/CHN ORGANISM Norovirus Hu/JSWX201702-2/CHN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3498) AUTHORS Fu,J.G., Ai,J., Bao,C.J., Huo,X. and Xing,Z. TITLE a new GII.P16/GII.2 norovirus variant JOURNAL Unpublished REFERENCE 2 (bases 1 to 3498) AUTHORS Fu,J.G., Ai,J., Bao,C.J., Huo,X. and Xing,Z. TITLE Direct Submission JOURNAL Submitted (20-MAR-2017) Department of Acute Infectious Disease Control and Prevention, Jiangsu Provincial Centre for Disease Control and Prevention, Jiangsu Rd, 172, Nanjing, Jiangsu 210009, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3498 /organism="Norovirus Hu/JSWX201702-2/CHN" /mol_type="genomic RNA" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2029510" /country="China" /collection_date="17-Feb-2017" CDS <1..1065 /codon_start=1 /product="RNA-dependent RNA polymerase" /protein_id="ASV60348.1" /translation="MTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMIRCARSFG GLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLAAA LEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSIAHWLL TLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGLKPTRPDK TEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPNETMIP HSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRWMRFSDL STWEGDRNLAPNFVNEDGVE" CDS 1046..2674 /codon_start=1 /product="capsid protein" /protein_id="ASV60349.1" /translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ" CDS 2674..3453 /codon_start=1 /product="minor structural protein" /protein_id="ASV60350.1" /translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG TRYWAPNSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT GPSHGTASSNSTRSTSLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA" ORIGIN 1 atgacaccag tgtacacagc agcactcaag gacgagctag tcaagactga gaaaatctat 61 ggaaagatca agaagagact gctctggggc tctgacttgt ccaccatgat ccggtgcgct 121 aggtcatttg gtgggctcat ggacgagatg aaggcacact gcatatcact cccagtccga 181 gttggcatga atatgaatga agatggccca ataatatttg agaaacattc cagatacaaa 241 tatcactatg atgcagacta ctctcgttgg gattcaacac aacagagggc agtactagca 301 gcagccttgg aaattatggt caggttctct gcagaaccac aattggcaca aatagtcgct 361 gaggatctgt tggcccctag tgtagtggat gtaggagact tcaaaattac aataaatgaa 421 gggctcccct ctggtgtgcc atgcacttct caatggaact ccatcgcaca ctggttgcta 481 actctctgtg ccttgtctga agtcaccaaa ctgtcccctg acattataca ggcaaattcc 541 atgttctcat tttacggtga tgacgagatt gtcagcaccg acataaaatt ggaccctgaa 601 cagttaaccg ccaaattgaa ggagtacggc ctgaaaccaa cccgcccaga caaaaccgag 661 ggacccctga ttatcagtga agatttgaac ggactcactt tcctccgaag gacagtgact 721 cgtgacccag ctggctggtt tggaaaactg gaccaaagct caattttgag gcagatgtac 781 tggactagag gaccaaatca tgaagacccc aatgagacaa tgatacccca ttctcaaaga 841 cccatacagc tcatggcact gcttggtgaa gcctctcttc acggaccctc tttctacagt 901 aaaatcagta aattggtcat aactgaactc aaagaaggtg ggatggactt ttacgtgcca 961 aggcaggaac ccatgttcag gtggatgagg ttttctgact tgagcacgtg ggagggcgat 1021 cgcaatctgg ctcccaattt tgtgaatgaa gatggcgtcg aatgacgccg ctccatctac 1081 tgatggtgca gccggcctcg tgccagaaag taataatgag gtcatggctc ttgaacccgt 1141 ggctggtgcc gccttggcag ccccggtcac cggtcaaaca aatattatag acccttggat 1201 tagagcaaat tttgtccagg cccccaatgg tgaatttaca gtctctcccc gaaatgcccc 1261 tggtgaagtg ctactgaatc tagagttggg tccagaatta aatccttatc tggcacattt 1321 agcaagaatg tacaatgggt atgccggtgg gatggaggtg caggtcatgt tggctgggaa 1381 cgcgttcaca gccggcaagt tggtcttcgc cgccgtgcca cctcacttcc cggttgaaaa 1441 ccttagccca cagcaaatca ccatgttccc tcatgtgatc atagatgtga gaaccttgga 1501 acctgtttta ttaccactcc ctgatgttag gaataatttc ttccattata atcagaaaga 1561 tgatcccaag atgagaattg tggctatgct ttataccccc ctcaggtcta atggttcagg 1621 tgatgatgtg tttacagtct cctgtagagt gttgactaga ccttcccctg actttgactt 1681 cacatacctg gtgccaccaa cagtggagtc taaaacaaag ccattcaccc tcccaatcct 1741 cacacttggg gaactttcca attctaggtt cccagtgtcc atagaccaga tgtacaccag 1801 ccctaatgaa gttatatcag tgcagtgtca aaatggtagg tgcacactgg acggggagct 1861 ccaagggaca acacaactcc aagtcagtgg catttgtgct ttcaaaggtg aagtgaccgc 1921 ccacttgcat gacaatgatc acctatataa tgttaccatc acaaacttga atgggtcccc 1981 ttttgatccc tccgaggata tccctgcccc tctgggtgtg cctgacttcc agggaagggt 2041 ttttggtatc atctcccaaa gagacaaaca caatagtcct gggcataatg aaccagcaaa 2101 caggggacac gacgctgtgg tccctactta cacagcacag tacactccaa aactgggaca 2161 aattcaaatt ggcacatggc agactgacga ccttacagtc aaccaaccag tcaaattcac 2221 cccagttgga ctcaatgaca ctgaacattt taaccaatgg gtggtcccta ggtatgctgg 2281 tgccctaaac ctcaatacaa accttgcccc ttctgttgct ccagtatttc caggagagcg 2341 cctgctcttc ttcagatcat acattcccct caagggcggt tatggaaacc cagccattga 2401 ttgcctacta ccacaagagt gggtgcaaca cttctatcag gaagcagccc cttcaatgag 2461 tgaggtggcc ctcgtcagat acatcaaccc ggacactggt cgggcactgt ttgaggccaa 2521 gctccacaga gctggtttca tgacagtctc gagcaacacc agtgccccgg tggttgtgcc 2581 tgccaacgga tacttcagat ttgattcttg ggtgaaccaa ttctattctc tcgcccccat 2641 gggaactggg aatgggcgta gaagggttca ataatggctg gagcttttgt agctggtctt 2701 gcaggggacg tgctcagcaa tgggcttagt tcattaatca atgcaggtgc taatgcaata 2761 aatcagaggg cagaatttga ttttaatcag aaattgcagc aaaattcttt taatcatgat 2821 aaggagatgt tgcaggctca gattcaggca actaagcagc tgcaggcaga catgatggct 2881 ataaaacaag gggtcttgac cgctggcggc ttttcccctg ctgatgcagc cagaggtgct 2941 gtgaacgcgc ccatgacaca ggcgctggat tggaatggca caaggtattg ggcaccaaac 3001 tccatgagga ccacatctta ttctggaaaa ttcacatcaa ccgccccagt gaggcaggct 3061 gacttccagc acacccaaag ccggccttcg agtggctcct ctgtgtcttc ctttgccact 3121 cagtcttcaa ggccaactct gaccacaacc actggtccct cacatggcac agcctcatca 3181 aattcaactc gcagcacaag cctctcccaa tcaacggtct ccagagctac atctaggact 3241 ggtgagtggg ttagagatca aaatagaaat ttggaaccct acatgcatgg tgccttacag 3301 acagcctttg tcaccccacc ttccagcagg gcatctgacg ggacagtctc aaccgtcccg 3361 aaaggtgttt tggactcctg gacacctgcg tttaacaccc gcaggcagcc gctttttgca 3421 cacctccgta agagggggga gtcacaagct tagtgaaaag gtgaaaattt atttaggatg 3481 aattgatttt acctttta //