Typing tool
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Typing tool
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Complete norovirus genomes
| KY653723 | GI.6 | |
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| GI.P11 |
ORF1: 1..768
ORF2: 752..2374
ORF3: 2374..3003
LOCUS KY653723 3090 bp RNA linear VRL 29-AUG-2017
DEFINITION Norovirus Hu/JSNJ16022/CHN RNA-dependent RNA polymerase gene,
partial cds; and capsid protein and minor structural pretein genes,
complete cds.
ACCESSION KY653723
VERSION KY653723.1
KEYWORDS .
SOURCE Norovirus Hu/JSNJ16022/CHN
ORGANISM Norovirus Hu/JSNJ16022/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3090)
AUTHORS Fu,J.-G., Jiang,C.-L. and Ai,J.
TITLE Coinfection with norovirus GI.b/GI.6 and GII.16/GII.13
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3090)
AUTHORS Fu,J.-G., Jiang,C.-L. and Ai,J.
TITLE Direct Submission
JOURNAL Submitted (22-FEB-2017) Department of Acute Infectious Disease
Control and Prevention, Jiangsu Provincial Centre for Disease
Control and Prevention, Jiangsu Rd, 172, Nanjing, Jiangsu 210009,
China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3090
/organism="Norovirus Hu/JSNJ16022/CHN"
/mol_type="genomic RNA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:2027310"
/country="China"
/collection_date="22-Feb-2017"
CDS <1..768
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="ASV45841.1"
/translation="MTESFSIMCRLTASPELASVVAQDLLAPSEMDVGDYVIRVKEGL
PSGFPCTSQVNSINHWLITLCALSEVTGLSPDVIQSMSYFSFYGDDEIVSTDIEFDPA
KLTQVLKEYGLKPTRPDKSEGPIIVRKSVDGLVFLRRTISRDAAGFQGRLDRASIERQ
IYWTRGPNHSDPFETLVPHQQRKIQLISLLGEASLHGEKFYRKISSKVIQEIKTGGLE
MYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
CDS 752..2374
/codon_start=1
/product="capsid protein"
/protein_id="ASV45842.1"
/translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL
PLEDVRNVLFHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF
LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPVQGMFMSPDVNQSVQFQNGRCQIDG
QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFIPLESPAPVGFPDLGGCDWHV
NFTFQAQNQDPSQSVTFATNDASFVPYLGSISPHNGGDFHAGDIIGSLGWISAPSDNS
QLNVWTIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQSSQLQVPCLLPQE
FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN
GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI"
CDS 2374..3003
/codon_start=1
/product="minor structural pretein"
/protein_id="ASV45843.1"
/translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN
SFKHDKEMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG
TRIAAPTSSTTTLRSGGFMAVPIPLSSKTKQPVMSGQDNPNYAASSISRTASWVQSQN
SMRSVSPFHSDALRTVWVTPPGSSSTSSVQSSFYGVFNTDRLPLFANRR"
ORIGIN
1 atgactgagt cattctcaat catgtgtcgg ctaactgctt ctccagaatt ggcctcagtg
61 gtggcacaag atcttcttgc accctcagaa atggacgttg gtgactacgt cataagagtg
121 aaggaaggcc tcccgtctgg cttcccatgc acatcacagg tcaatagcat aaaccattgg
181 ttgataacat tgtgcgccct ctctgaggtg actggcctgt caccagatgt tatccagtcc
241 atgtcatact tttcttttta tggtgatgat gaaatagttt ccactgacat agaatttgac
301 ccagcaaagc tgacacaagt ccttaaagag tatggcctca aacccacccg ccctgacaag
361 agtgaaggtc caataattgt gaggaagagt gtggatggcc tggtcttctt acgtcgcacc
421 atttcccgcg acgccgcggg gttccagggg cgactggacc gagcatccat tgaaaggcag
481 atctattgga ccagagggcc caatcactca gacccctttg aaaccttggt gccccaccag
541 caaagaaaaa tccagctgat atcactgtta ggtgaggcct cattgcatgg tgagaaattc
601 tacaggaaga tctcaagcaa agtcatccaa gagattaaga cagggggtct tgaaatgtat
661 gtgccagggt ggcaagccat gttccgctgg atgcggttcc acgaccttgg cctgtggaca
721 ggagatcgca atctcctgcc cgaattcgta aatgatgatg gcgtctaagg acgccccaac
781 atcccctgat ggcgccagtg gcgccggcca gctggtaccg gaggctaata cagctgagca
841 aatttcaatg gaccctgttg cgggtgcttc aacagcagtc gcgacagctg ggcaagttaa
901 tatgattgac ccatggattt tcaataactt tgtccaggca cctcaaggag aattcactat
961 ttcccctaat aatacccccg gtgatatttt gtttgattta caactaggac cccaccttaa
1021 tccatttcta gcccatctct cacagatgta caatggttgg gtcggcaata tgcgcgtgcg
1081 catactgttg gccgggaatg ccttcacagc tggaaagata atcatttgct gtgtcccccc
1141 tggttttgat gccagaatac tcacaatagc tcaagcaact ctcttcccac acttaattgc
1201 tgatgtaagg acccttgagc ctgtggagct tcctttggag gatgtgcgca atgttctctt
1261 tcacaacagt agccagccgc agccaacaat gcgactggtt gctatgttgt acactcccct
1321 ccgcactggt ggtggttccg gaggcactga tgcctttgtg gtggcgggta gggtgcttac
1381 gtgccccgcc cccgacttta gttttctgtt tctagtcccc ccttccgttg aacaaaagac
1441 cagagttttc agtgtcccca atatacccct gaaggatctc tcaaattccc gtgtccctgt
1501 gccagtgcag ggcatgttta tgtccccaga tgttaatcag tcagtccagt ttcagaatgg
1561 acgctgccaa attgatggcc aactccaagg caccactcca gtctcgctca gtcaactctg
1621 caagattagg ggtaaaactt ctagcaatgc tagggtgctc aacttaagtg aggtagatgg
1681 cacacccttc atcccacttg aatcaccagc gccagtcggt tttcccgact tgggaggttg
1741 tgactggcat gtaaatttca ctttccaggc tcaaaatcag gacccatctc aaagtgtaac
1801 ctttgcaact aatgatgcca gctttgtccc ctatctaggt agtatctctc ctcacaatgg
1861 gggagatttt catgcaggtg acatcatagg tagccttggt tggatttcag ccccgtctga
1921 taattcacaa cttaatgttt ggacaatacc aaagtatgga tctagtctcc cagatgtcac
1981 ccatcttgcc cctgctgtgt tccccccagg ctttggggag gtgatcttgt acttctattc
2041 taccttccca ggttctggac aatccagcca acttcaagtc ccatgcttgt tgcctcagga
2101 gtttatcacc cacttctgta acgaacaggc tcccatcgct ggggaggctg ccctcctcca
2161 ctacgtggac cctgatacgg ggcgaaactt gggagaattt aaactttacc ctgatgggtt
2221 tatgacctgt gtccccaata gtgttagtag tggccctcaa acccttccta tcaatggagt
2281 ctttgtcttt gtttcatggg tatctagatt ctatcaactc aagcctgtgg gaacggcctc
2341 agcggctaga aggcttggat tgcggcgcat ataatggccc aagctgtcat cggtgccata
2401 gccgcatctg ccgctggtag catactaggg gcaggcatac aggctggtgc tgaggctggt
2461 ctccaggctc aacggtatca gcaggatctg cagttgcaac aaaattcttt caagcatgat
2521 aaggaaatgt taggctacca agttcaggct agtaatgctc ttttagctaa gaatcttaac
2581 actagatatg ctcttctgca ggcagggggc ctatctagcg ctgatgctgc tcgggcagtg
2641 gctggtgctc ctgtcacccg tatagtggac tggaatggca cgcgcattgc agcgcccact
2701 tcaagcacca ctacactcag atctggtggt tttatggctg tccctatacc attgtcttca
2761 aagaccaagc aaccagtgat gtctgggcag gataatccaa attatgctgc ttcttctatc
2821 tctagaactg cttcatgggt gcaatctcaa aattctatga ggtctgtttc tccttttcac
2881 agtgatgctt tgagaaccgt ttgggttaca ccacccggtt catcatcaac ttcatctgtg
2941 caatctagtt tctatggtgt ttttaataca gatagattgc ctctgttcgc aaacagaagg
3001 taataatttt gtaataggat gccagtgtgc accatattca gatttggttt taattggatt
3061 gttttaataa aatttggcta aattggtgtt
//