Typing tool
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Typing tool
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Complete norovirus genomes
| KY649455 | GII.1 | |
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| GII.P33 |
ORF1: 1..1065
ORF2: 1046..2653
ORF3: 2653..3426
LOCUS KY649455 3473 bp RNA linear VRL 22-AUG-2017
DEFINITION Norovirus Hu/JSWXOB1602/CHN RNA-dependent RNA polymerase gene,
partial cds; and capsid protein and minor structural protein genes,
complete cds.
ACCESSION KY649455
VERSION KY649455.1
KEYWORDS .
SOURCE Norovirus Hu/JSWXOB1602/CHN
ORGANISM Norovirus Hu/JSWXOB1602/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3473)
AUTHORS Fu,J.G., Qian,Y.H. and Ai,J.
TITLE A GII.g/GII.1 Recombination Norovirus Outbreak
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3473)
AUTHORS Fu,J.G., Qian,Y.H. and Ai,J.
TITLE Direct Submission
JOURNAL Submitted (22-FEB-2017) Department of Acute Infectious Disease
Control and Prevention, Jiangsu Provincial Centre for Disease
Control and Prevention, Jiangsu Rd, 172, Nanjing, Jiangsu 210009,
China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3473
/organism="Norovirus Hu/JSWXOB1602/CHN"
/mol_type="genomic RNA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:2026937"
/country="China"
/collection_date="23-Feb-2017"
CDS <1..1065
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="ASU45074.1"
/translation="MTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFG
GLMEELKTHCVTLPIRVGMNMNEDGPIIFEKHSRYTYHYDADYSRWDSTQQRAVLAAA
LEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISITEGLPSGVPCTSQWNSIAHWLL
TLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLKPTRPDK
TEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMVP
HSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDL
STWEGDRNLAPSFVNEDGVE"
CDS 1046..2653
/codon_start=1
/product="capsid protein"
/protein_id="ASU45075.1"
/translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRMNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPFLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAIPPHFPLESLSPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQPEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPILTIGELSNSRFPVPIDELYTSPNEGVVVQPQNGRSTLDGELLGTT
QLVPSNICALRGRINAQVPDDHHQWNLQVTNANGTPFDPTEDVPAPLGTPDFLANIYG
VTSQRNPDNTCRAHDGVLATWSPKFTPKLGSVVLGTWEESDLDLNQPTRFTPVGLYDT
NHFDQWILPNYSGRLTLNMNLAPSVSPLFPGEQILFFRSHIPLKGGTSNGAIDCLLPQ
EWIQHFYQESAPSPTDVALIRYTNPDTGRVLFEAKLHRQGFITVANSGSRPIVVPPNG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
CDS 2653..3426
/codon_start=1
/product="minor structural protein"
/protein_id="ASU45076.1"
/translation="MAGAFVAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQIQATKQLQADMIALRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
TRYWAPGAMKTTAFSGGFTSSPNTRTIDLPRKTSNIPAPTPVSRLSSSASTVSTRSTI
VSGTSSPSSSTRSSFNPQPTSSSSRTSEWVRSQNRALEPYMRGALQTAYVTPPSSRAS
SNGTVSTVPKEVLDSWTSVFNTHRQPLFAHLRRRGESQA"
ORIGIN
1 atgacaccag tctacacagg agctctcaaa gatgagttag ttaaaactga taaaatatat
61 ggtaagatca agaaaaggtt gttatggggt tcagatctgg caaccatgat ccgttgcgca
121 cgagcgttcg gagggttgat ggaagaactc aagacccact gtgttacgct ccctattagg
181 gtggggatga acatgaatga ggatggtccc atcatttttg aaaaacactc taggtacacc
241 taccattatg atgcagacta ctctcggtgg gactcaacac agcagagagc tgttttagct
301 gcagccctgg agataatggt aaaattttcc ccagaaccac acctagctca gattgtcgca
361 gaagacctcc tatctcccag tgtgatggac gtgggcgact ttaaaatatc aatcactgaa
421 ggactcccct ctggggtgcc ttgcacttca caatggaact ccattgctca ttggcttctc
481 acgctctgtg cactatctga ggtgacaaat ttatctcccg acatcatcca agcaaactca
541 ctcttttctt tctatggtga tgatgaaatt gtgagcacag acattaaatt agacccagaa
601 aggctaacag ccaaactaaa agagtatggt ctcaagccaa cccgccctga caagactgaa
661 ggacctctgg tcatttctga ggacttagat ggtctgacct tcttgcggag gactgtgacc
721 cgtgacccag caggttggtt tggaaaattg gaacaaagct caatacttag acagatgtat
781 tggaccaggg gccccaatca tgaggaccct tctgaaacaa tggtaccaca ctcccaacga
841 cccatacagt tgatgtccct actaggtgaa gctgcattac atggcccatc attctacagc
901 aaaatcagca aattggtcat atcagagttg aaagaaggtg gcatggactt ttacgtgcca
961 aggcaagagc cgatgttccg atggatgagg ttctcagact tgagcacgtg ggagggcgat
1021 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa
1081 cgatggtgca gccggtctcg taccagaggt caacaacgag acgatggcac ttgagccggt
1141 ggctggggct tccatagctg cccctctaac cggccaaaat aatgtgatag acccctggat
1201 tagaatgaat tttgtccaag ctccaaatgg tgaatttaca gtgtcccccc gtaattcccc
1261 aggtgaagtg ttgttaaatt tggaattagg ccctgaatta aatccattcc tggcacacct
1321 ttcaagaatg tacaatggtt atgctggtgg ggttgaagtg caggtgctac ttgctgggaa
1381 cgcgttcaca gcgggaaaac tagtgtttgc agcaatcccc ccacacttcc ctcttgagag
1441 tctgagtcct ggtcaaatta caatgttccc tcatgtaatt attgatgtta gaactttgga
1501 acctgttctc ttgcctttgc cagatgttag gaataatttc tttcactata atcagcagcc
1561 tgagccccgt atgagacttg tggctatgtt gtatactcct cttagatcta atggctctgg
1621 tgacgatgtg ttcacagttt cttgtagggt cctcactcgc ccctctccag actttgattt
1681 taattacttg gtccccccaa ctgtggagtc taaaaccaaa ccattcaccc tgccaatatt
1741 gaccatcgga gaactgtcaa attctcggtt cccagtacca atagatgaat tgtacaccag
1801 ccctaatgaa ggagtggttg tgcaacctca aaatggcaga tcaacactcg atggtgaact
1861 gcttggtacc acacaacttg taccatcaaa catctgtgcc ttgcgagggc gcatcaacgc
1921 ccaagtgcca gatgatcacc accaatggaa cttgcaggtt acaaatgcaa atgggactcc
1981 ctttgacccc actgaagatg tcccagcacc attgggcaca ccggatttcc tggcaaacat
2041 ctacggagtc accagtcaga ggaatcctga caacacttgc cgtgcccatg atggggtttt
2101 ggcaacctgg agccctaaat tcacacccaa gttaggatct gtggttttgg gcacttggga
2161 agaaagtgat cttgatctta atcagcccac cagatttaca cctgttggtt tgtatgacac
2221 aaaccacttt gatcagtgga ttctacccaa ttattctgga agattgacct taaacatgaa
2281 tctggcgccc tccgtttctc ctctcttccc aggtgaacaa atactcttct ttaggtccca
2341 tataccactt aaaggaggca cttccaatgg tgccattgat tgtctactcc ctcaggagtg
2401 gatccagcat ttctatcagg agtcagcccc gtcacccaca gatgttgctc tgattaggta
2461 caccaaccct gacacgggcc gtgtcctttt tgaggcaaaa ctacatagac agggattcat
2521 cacagtagca aattctggtt ctagacctat tgttgtccct cctaatggtt atttcaggtt
2581 tgattcttgg gttaatcaat tttattctct cgcccccatg ggaactggga atgggcgtag
2641 aagggtgcag taatggctgg agcttttgta gcagggcttg ccggtgacat agtcaccaat
2701 ggcattggtt cacttgtgaa cgctggagcc aatgcaataa accaaaaagt agattttgaa
2761 aataacaaac aactacagca ggcctctttc aaccatgata aggaaatgtt gcaagctcaa
2821 atccaggcca caaaacaatt acaggctgac atgattgcgc tcagacaagg ggtattgacc
2881 gcaggcggct tttcccctac tgatgcagca agaggggcgg ttaatgcgcc catgacgcaa
2941 gtcttggact ggaatgggac taggtactgg gcccccggag ccatgaaaac gactgctttc
3001 tccggcgggt tcacaagctc tcccaacacc aggactattg atttgcctag gaaaacatca
3061 aacataccag cccccacgcc tgtgtctaga cttagttctt ctgcttctac tgtttctacc
3121 cgctcaacaa ttgttagcgg gacttctagc ccttcttctt cgactaggag ctcttttaat
3181 ccccagccca cctcctcttc ttctcggact agcgaatggg tgcgtagtca aaacagggcg
3241 ctggaaccct acatgagggg agcgttacaa actgcttacg tgacgcctcc ctctagtaga
3301 gcctccagca atggcacagt ctcaaccgtg ccaaaagaag ttttggactc ctggacatct
3361 gtgttcaaca cccacagaca gccgcttttc gctcatctcc gtcgaagagg ggagtcacag
3421 gcttagtgaa aagatgatct ttttcttcta tccttctgaa atttttatct ttt
//