Typing tool
|
Complete norovirus genomes
KY649454 | GII.1 | ||
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GII.P33 |
ORF1: 1..1065 ORF2: 1046..2653 ORF3: 2653..3426LOCUS KY649454 3473 bp RNA linear VRL 22-AUG-2017 DEFINITION Norovirus Hu/JSWXOB1601/CHN RNA-dependent RNA polymerase gene, partial cds; and capsid protein and minor structural protein genes, complete cds. ACCESSION KY649454 VERSION KY649454.1 KEYWORDS . SOURCE Norovirus Hu/JSWXOB1601/CHN ORGANISM Norovirus Hu/JSWXOB1601/CHN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3473) AUTHORS Fu,J.G., Qian,Y.H. and Ai,J. TITLE A GII.g/GII.1 Recombination Norovirus Outbreak JOURNAL Unpublished REFERENCE 2 (bases 1 to 3473) AUTHORS Fu,J.G., Qian,Y.H. and Ai,J. TITLE Direct Submission JOURNAL Submitted (22-FEB-2017) Department of Acute Infectious Disease Control and Prevention, Jiangsu Provincial Centre for Disease Control and Prevention, Jiangsu Rd, 172, Nanjing, Jiangsu 210009, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3473 /organism="Norovirus Hu/JSWXOB1601/CHN" /mol_type="genomic RNA" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2026936" /country="China" /collection_date="23-Feb-2017" CDS <1..1065 /codon_start=1 /product="RNA-dependent RNA polymerase" /protein_id="ASU45071.1" /translation="MTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFG GLMEELKTHCVTLPIRVGMNMNEDGPIIFEKHSRYTYHYDADYSRWDSTQQRAVLAAA LEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISITEGLPSGVPCTSQWNSIAHWLL TLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLKPTRPDK TEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMVP HSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDL STWEGDRNLAPSFVNEDGVE" CDS 1046..2653 /codon_start=1 /product="capsid protein" /protein_id="ASU45072.1" /translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ NNVIDPWIRMNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPFLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKLVFAAIPPHFPLESLSPGQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQQPEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP TVESKTKPFTLPILTIGELSNSRFPVPIDELYTSPNEGVVVQPQNGRSTLDGELLGTT QLVPSNICALRGRINAQVPDDHHQWNLQVTNANGTPFDPTEDVPAPLGTPDFLANIYG VTSQRNPDNTCRAHDGVLATWSPKFTPKLGSVVLGTWEESDLDLNQPTRFTPVGLYDT NHFDQWILPNYSGRLTLNMNLAPSVSPLFPGEQILFFRSHIPLKGGTSNGAIDCLLPQ EWIQHFYQESAPSPTDVALIRYTNPDTGRVLFEAKLHRQGFITVANSGSRPIVVPPNG YFRFDSWVNQFYSLAPMGTGNGRRRVQ" CDS 2653..3426 /codon_start=1 /product="minor structural protein" /protein_id="ASU45073.1" /translation="MAGAFVAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA SFNHDKEMLQAQIQATKQLQADMIALRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG TRYWAPGAMKTTAFSGGFTSSPNTRTIDLPRKTSNIPAPTPVSRLSSSASTVSTRSTI VSGTSSPSSSTRSSFNPQPTSSSSRTSEWVRSQNRALEPYMRGALQTAYVTPPSSRAS SNGTVSTVPKEVLDSWTSVFNTHRQPLFAHLRRRGESQA" ORIGIN 1 atgacaccag tctacacagg agctctcaaa gatgagttag ttaaaactga taaaatatat 61 ggtaagatca agaaaaggtt gttatggggt tcagatctgg caaccatgat ccgttgcgca 121 cgagcgttcg gagggttgat ggaagaactc aagacccact gtgttacgct ccctattagg 181 gtggggatga acatgaatga ggatggtccc atcatttttg aaaaacactc taggtacacc 241 taccattatg atgcagacta ctctcggtgg gactcaacac agcagagagc tgttttagct 301 gcagccctgg agataatggt aaaattttcc ccagaaccac acctagctca gattgtcgca 361 gaagacctcc tatctcccag tgtgatggac gtgggcgact ttaaaatatc aatcactgaa 421 ggactcccct ctggggtgcc ttgcacttca caatggaact ccattgctca ttggcttctc 481 acgctctgtg cactatctga ggtgacaaat ttatctcccg acatcatcca agcaaactca 541 ctcttttctt tctatggtga tgatgaaatt gtgagcacag acattaaatt agacccagaa 601 aggctaacag ccaaactaaa agagtatggt ctcaagccaa cccgccctga caagactgaa 661 ggacctctgg tcatttctga ggacttagat ggtctgacct tcttgcggag gactgtgacc 721 cgtgacccag caggttggtt tggaaaattg gaacaaagct caatacttag acagatgtat 781 tggaccaggg gccccaatca tgaggaccct tctgaaacaa tggtaccaca ctcccaacga 841 cccatacagt tgatgtccct actaggtgaa gctgcattac atggcccatc attctacagc 901 aaaatcagca aattggtcat atcagagttg aaagaaggtg gcatggactt ttacgtgcca 961 aggcaagagc cgatgttccg atggatgagg ttctcagact tgagcacgtg ggagggcgat 1021 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa 1081 cgatggtgca gccggtctcg taccagaggt caacaacgag acgatggcac ttgagccggt 1141 ggctggggct tccatagctg cccctctaac cggccaaaat aatgtgatag acccctggat 1201 tagaatgaat tttgtccaag ctccaaatgg tgaatttaca gtgtcccccc gtaattcccc 1261 aggtgaagtg ttgttaaatt tggaattagg ccctgaatta aatccattcc tggcacacct 1321 ttcaagaatg tacaatggtt atgctggtgg ggttgaagtg caggtgctac ttgctgggaa 1381 cgcgttcaca gcgggaaaac tagtgtttgc agcaatcccc ccacacttcc ctcttgagag 1441 tctgagtcct ggtcaaatta caatgttccc tcatgtaatt attgatgtta gaactttgga 1501 acctgttctc ttgcctttgc cagatgttag gaataatttc tttcactata atcagcagcc 1561 tgagccccgt atgagacttg tggctatgtt gtatactcct cttagatcta atggctctgg 1621 tgacgatgtg ttcacagttt cttgtagggt cctcactcgc ccctctccag actttgattt 1681 taattacttg gtccccccaa ctgtggagtc taaaaccaaa ccattcaccc tgccaatatt 1741 gaccatcgga gaactgtcaa attctcggtt cccagtacca atagatgaat tgtacaccag 1801 ccctaatgaa ggagtggttg tgcaacctca aaatggcaga tcaacactcg atggtgaact 1861 gcttggtacc acacaacttg taccatcaaa catctgtgcc ttgcgagggc gcatcaacgc 1921 ccaagtgcca gatgatcacc accaatggaa cttgcaggtt acaaatgcaa atgggactcc 1981 ctttgacccc actgaagatg tcccagcacc attgggcaca ccggatttcc tggcaaacat 2041 ctacggagtc accagtcaga ggaatcctga caacacttgc cgtgcccatg atggggtttt 2101 ggcaacctgg agccctaaat tcacacccaa gttaggatct gtggttttgg gcacttggga 2161 agaaagtgat cttgatctta atcagcccac cagatttaca cctgttggtt tgtatgacac 2221 aaaccacttt gatcagtgga ttctacccaa ttattctgga agattgacct taaacatgaa 2281 tctggcgccc tccgtttctc ctctcttccc aggtgaacaa atactcttct ttaggtccca 2341 tataccactt aaaggaggca cttccaatgg tgccattgat tgtctactcc ctcaggagtg 2401 gatccagcat ttctatcagg agtcagcccc gtcacccaca gatgttgctc tgattaggta 2461 caccaaccct gacacgggcc gtgtcctttt tgaggcaaaa ctacatagac agggattcat 2521 cacagtagca aattctggtt ctagacctat tgttgtccct cctaatggtt atttcaggtt 2581 tgattcttgg gttaatcaat tttattctct cgcccccatg ggaactggga atgggcgtag 2641 aagggtgcag taatggctgg agcttttgta gcagggcttg ccggtgacat agtcaccaat 2701 ggcattggtt cacttgtgaa cgctggagcc aatgcaataa accaaaaagt agattttgaa 2761 aataacaaac aactacagca ggcctctttc aaccatgata aggaaatgtt gcaagctcaa 2821 atccaggcca caaaacaatt acaggctgac atgattgcgc tcagacaagg ggtattgacc 2881 gcaggcggct tttcccctac tgatgcagca agaggggcgg ttaatgcgcc catgacgcaa 2941 gtcttggact ggaatgggac taggtactgg gcccccggag ccatgaaaac gactgctttc 3001 tccggcgggt tcacaagctc tcccaacacc aggactattg atttgcctag gaaaacatca 3061 aacataccag cccccacgcc tgtgtctaga cttagttctt ctgcttctac tgtttctacc 3121 cgctcaacaa ttgttagcgg gacttctagc ccttcttctt cgactaggag ctcttttaat 3181 ccccagccca cctcctcttc ttctcggact agcgaatggg tgcgtagtca aaacagggcg 3241 ctggaaccct acatgagggg agcgttacaa actgcttacg tgacgcctcc ctctagtaga 3301 gcctccagca atggcacagt ctcaaccgtg ccaaaagaag ttttggactc ctggacatct 3361 gtgttcaaca cccacagaca gccgcttttc gctcatctcc gtcgaagagg ggagtcacag 3421 gcttagtgaa aagatgatct ttttcttcta tccttctgaa atttttatct ttt //