Typing tool
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Typing tool
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Complete norovirus genomes
| KY496328 | GII.23 | |
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| GII.P23 |
ORF1: 1..4879
ORF2: 4860..6491
ORF3: 6491..7255
LOCUS KY496328 7263 bp RNA linear VRL 20-OCT-2017
DEFINITION Norovirus GII strain Hu/GII.P23_GII.23/2010/PE/PE1848, complete
genome.
ACCESSION KY496328
VERSION KY496328.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7263)
AUTHORS Collins,N., Vinje,J., Chhabra,P. and Aswath,K.
TITLE Direct Submission
JOURNAL Submitted (23-JAN-2017) NCIRD / DVD / GRVLB, CDC, 1600 Clifton Rd
NE, Atlanta, GA 30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 8
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7263
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.P23_GII.23/2010/PE/PE1848"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Peru"
/collection_date="23-Dec-2010"
/note="genotype: GII"
CDS <1..4879
/codon_start=2
/product="polyprotein"
/protein_id="ARQ32573.1"
/translation="PPPPNGEDIVIKYTKQGDTLSGVPTVSTADISPLHDTAYSVPPL
DQREKVDAKEPLTGSILEMWDGEIYHYGLYVERGQVLGVHKPPAAVSIARIELTPLSL
YWRTVYTPPYLVAPDTLKKLHGETFPYTAFDNNCYSFCCWVLDLNDSWLNRKFVSRTT
GFYRPYQEWNRKPLPTMDEGKLKKVANVFLCGLSGLFTRPIKDLIGKLKPLNILNIVT
NCDWTFPGVVEAIILLAELFGIFWTPPDISAFVASLLGDYEMQGPEDIATEIVPVILG
GIGMVLGFTKEKIGRLLGSAASSLRACREIGNYGIEVVKLVMKWFFPTKSEVNEMEMV
RTIEDAVLDFEAIENNHMTALLKDKNSLATFLRALDMEEEKARKLSTKSASPDIVGTI
NALLARIAAARSLVHRAKEEMSSRMRPVVIMISGRPGIGKTHLARDLAKKMAATLSGD
QRVGLVPRNGVDHWDAYKGERIVLWDDYGMSNPVADALRLQELADTCPLTLNCDRIEN
KGKVFDSDTLIITTNLANPAPLDYVNFEACSRRIDFLVYADSPSVDKAKRDFPGQPDM
WKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTHSLIARATGLLHERLDEF
DLQGQELPVYNFDQNKVAAFRKLAADNKYGLMDTLRAGNKLKEVKNLDQFKEAVKDIR
IKPCRIIYNSMAYDLDSNGSGRVNVKKVGDQRVQANNELNSALNKLRGARIRYYVKCF
QEMVYSLLQIAGAAFVTSRMAQRMNVNKLWTKPEKQQEASAGPPTPPTEEWTITPMDT
IQEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERQGKYSIEEYLQDRDRYYE
ELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRREERATLGLVTGSEIRKRNPDDFKPK
GKLWADDDRSVNYNERIDFEAPPSLWSRIVNFGSGWGFWVSSNLFITSTHVIPQNMSE
AFGVPTSQIQIHRSGEFCKMRFPKAIRPDVSGMILEEGAPEGTVVTILIKRPTGELMP
LAARMGTHATMKIQGRMIGGQMGMLLTGSNAKNMDLGTVPGDCGCPYVYKRGNDWVVI
GVHTAAARGGNTVICATQGPDGEATLEGGDNHGTYCGAPILGPGNAPKLSTKTKFWRS
SNTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTAPRGKPPRPAVLEAAKET
ICNVLEQTIEPPQKWSYAQACASLDKTTSSGHPHHKKKNDNWNGESFTGVLADQASKA
NLMYEQGKHMQPVYTGALKDELVKTSKIYETIKKRLLWGSDLGTMIRCARSFGGLMDE
MKANCVNLPVRVGMNMNEDGPIIFEKHSKYRYHYDADYSRWDSTQQRCVLGTALDIMV
RYSAEPELAQIVAEDLLSPSVMDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCAM
SEVSGLSPDVVQSNSCFSFYGDDEIVSTDIKLDPQKLTDKLREYGLIPTRPDKTEGPL
IIRESLEGLTFLRRDVCRDPAGWYGKLDQSSIMRQLYWTKGPNHEDPNETMIPHSQRP
VQLMSLLGEAALHGPTFYKRVSKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEG
DRNLAPESVNEDGVE"
CDS 4860..6491
/codon_start=1
/product="capsid VP1"
/protein_id="ARQ32571.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNETMALEPVAGGAIAAPLTGQ
TNFIDPWIRGNYVQAPNGEFTVSPRNSPGEILLNLELGPELNPFLSHLSRMYNGYAGG
IDVQVIMAGNAFTAGKIIFAAIPPHFPVENLSPPQITMFPHIIVDVRTLEPINIPVPD
VRNNFFHYNQNNESRMRLVAMLYTPLRSNGSAEDVFTVSCRVLTKPSADFEFNYLVPP
TVESRTKPFTIPILTIGEMTNSRFPVPIDMLHTSPTENIVVQPQNGRCTIDGELLGTT
QLITSNICSFRGSISGHEGNDDQHLWHFNITNPNGTPFDPTEDVPAPLGTPDFRGQLY
GVISQRDREGTPSENNQKANRSHQGVISTISPKFVPKLGSVMIGTWTTDDIKNQPSKF
TPIGLNDDDNFKQWELPNYSGALTLNMGLAPSVFPTYPGEQILFFRSYLPLKGGYGSP
FIDCLVPQEWVAHFYQESAPAQTDVALIRYVNPETGRVLFEAKLHRQGFITVAKSGDS
PINVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ"
CDS 6491..7255
/codon_start=1
/product="capsid VP2"
/protein_id="ARQ32572.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQKIDFENNKYFQNA
SFAHDKDMLNAQVEATKKLQADMIAIKQGVLVAGGFSPTDAARGAINAPITKALDWNG
TRYWAPNATSTTSMSGGFTGQVSHRTTPNFKTNQAPKPPPSSGSSVRSNSTQLTSLSS
HSSGSSRSSGSTVVSSLPSSSRTRDWVNQQNLNLEPHLPGSLRTAFVTPPSSSASSSG
TVSTVPKGVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 ccccccaccc ccaaatggtg aggacatagt catcaagtat accaaacaag gggatacact
61 cagtggagtg cccaccgtct ccactgcaga catatcccca ttgcatgaca ccgcatatag
121 tgtccctccc ttggaccaga gggaaaaggt ggacgcaaaa gaacccctaa ctgggtcaat
181 acttgagatg tgggatggtg agatctacca ttacgggctc tatgtggaga gagggcaagt
241 tctcggtgtg cacaaaccac cagctgctgt gagcattgca cgcatcgaac taacccccct
301 ctctctatac tggagaacag tttacacacc tccctacctg gtagctcctg acacccttaa
361 gaagctccac ggtgagacat tcccctacac agcatttgat aacaactgct actcattttg
421 ttgttgggtt ctggacctga acgactcgtg gctcaataga aaattcgtgt caaggaccac
481 aggcttctac agaccctacc aggagtggaa caggaaacca ttgccaacca tggacgaagg
541 aaagcttaag aaggtggcca acgtcttcct gtgtggcctg tctgggcttt tcaccaggcc
601 catcaaagat ctcataggca aactgaaacc actgaacatt cttaacattg tcaccaattg
661 tgattggacg ttcccgggag tcgtagaggc gatcatcctc ctcgcagagc tctttgggat
721 cttctggaca ccaccagaca tatctgcctt cgtcgcctct ctgttaggtg actatgagat
781 gcaaggcccc gaggacattg cgaccgagat agtcccagtc attctaggtg gtattggcat
841 ggtacttggt ttcactaaag agaagatcgg ccggttgctg ggttccgcgg catcatcact
901 cagggcctgc agggaaatcg gcaactatgg gatagaggtg gtaaaattgg tgatgaaatg
961 gttctttcca accaaaagtg aggtcaatga gatggaaatg gtcagaacaa tagaggacgc
1021 agtgctcgac tttgaggcaa ttgaaaacaa tcacatgaca gctctactca aagacaaaaa
1081 tagcctggcc accttcctca gggcattgga tatggaagaa gagaaagcgc ggaaactatc
1141 aaccaaatcc gcgtcccccg acatagtcgg cactataaat gcactcctgg cgagaattgc
1201 cgctgctagg tcactagtgc acagggctaa ggaagagatg tcatcaagga tgcgtcctgt
1261 tgtcatcatg atatccgggc gacctgggat agggaaaacc catctggccc gcgacctagc
1321 taagaagatg gcagccactc tgtcaggtga tcagagagtg ggcctggtcc caaggaatgg
1381 tgttgaccat tgggatgcat acaagggaga aaggatcgtc ctgtgggatg attacggtat
1441 gagcaacccc gtggcagacg ccctccgact ccaggaactc gccgatacat gccccctgac
1501 actcaactgt gataggatag agaacaaagg aaaggtcttt gacagtgaca ccttgatcat
1561 cactactaat ctggccaacc cggcccccct ggactatgtg aactttgaag cttgctcacg
1621 ccgcatagat ttcctcgttt atgcggactc tccttcagtt gataaggcaa agagagactt
1681 cccaggccaa ccagacatgt ggaaagacgc cttcaaacca gacttctcac acataaagct
1741 acaactggca ccacagggag gatttgacaa gaatgggaac accccacatg ggaagggcgt
1801 catgaaaaca ctaaccacac actccctcat agcccgtgcc actggtttac tccatgagag
1861 attagatgaa tttgacttac agggtcaaga attgccagtc tacaacttcg accagaacaa
1921 ggtggccgct ttccggaaac tagcggccga caacaagtat ggtctcatgg acactttgag
1981 ggcaggcaac aaattgaagg aggttaagaa tctagaccaa ttcaaggaag cggtgaagga
2041 catccgcata aagccttgca ggataatcta caactcaatg gcttatgatc tggattcaaa
2101 tgggtcaggc agagtcaatg ttaagaaagt gggagaccaa agagtccagg ccaacaatga
2161 actcaactcc gcactcaaca aactgcgcgg ggctagaatc agatactatg tgaagtgctt
2221 ccaggaaatg gtctactccc ttctccagat tgctggtgcg gccttcgtta catcaagaat
2281 ggcacaaaga atgaatgtca acaagctgtg gacaaaacca gaaaaacaac aggaggcctc
2341 tgcagggccc cccacccccc caactgaaga gtggaccata acaccaatgg acacgatcca
2401 ggaaggtaag aagggcaaga acaaaagtgg taggggtaag aaacacactg cattctctag
2461 taagggcctt agtgatgagg agtatgatga gtacaagaga atcagggagg agcgccaagg
2521 gaagtactcc atagaagaat acctccagga cagggaccgg tactatgaag aattggccat
2581 agccaaagca acagaggagg acttctgtga agaggaggag atcaagataa ggcaaagaat
2641 tttccgccca accaggaaac agcgtaggga ggagagagcc actctaggcc ttgtcacagg
2701 cagtgaaatt agaaagagga accccgatga tttcaaacca aaaggtaaac tgtgggctga
2761 tgatgaccgt agtgtcaact acaatgaaag gatagacttt gaagcccctc ccagcctctg
2821 gtccagaata gtcaacttcg gttcgggttg gggcttctgg gtctcatcaa atttgttcat
2881 cacctccaca cacgtcatcc cacaaaacat gtctgaggct ttcggggtac caacaagcca
2941 aatccaaata cataggagtg gggagttctg caaaatgagg ttcccaaagg ccatcaggcc
3001 cgatgtctct ggcatgattc ttgaggaagg cgcgcctgaa ggcacggtgg tgaccatatt
3061 gatcaaaaga ccaactggtg aactcatgcc attggcagct cgcatgggca cccacgccac
3121 catgaaaata caggggagga tgattggagg tcaaatgggg atgcttctca caggatccaa
3181 cgccaaaaac atggaccttg gcaccgtgcc tggtgattgt ggctgccctt atgtctacaa
3241 aagaggcaat gattgggtag ttatcggggt gcacaccgcc gccgccaggg gtggcaacac
3301 ggtgatctgt gccactcagg ggccagatgg tgaagccaca cttgagggtg gcgacaacca
3361 tgggacctat tgtggcgcgc caatattagg accaggaaac gccccgaaac tcagcaccaa
3421 gaccaaattc tggagatcct ccaacactcc gctcccccct ggcacatacg aaccagccta
3481 cctcggtggt aaggacccaa gggtcaaggg cggcccatca ctacaacaag tcatgaggga
3541 gcaactcaag cccttcactg ccccacgtgg aaaaccacca aggccagcgg ttttggaggc
3601 cgctaaggaa accatctgca atgtgctgga gcaaaccatt gaaccgcccc agaagtggtc
3661 ctatgcacag gcttgtgcct ccctagacaa aacaacctca agtggccacc cccaccacaa
3721 gaagaaaaat gacaattgga acggggaatc cttcactggt gttctggctg atcaggcttc
3781 aaaagcaaac ctcatgtatg agcaagggaa acacatgcag cctgtgtaca caggcgcgct
3841 caaagatgag cttgtcaaaa ccagcaagat ctatgaaacc attaagaaga gactcttgtg
3901 gggttcagac ctcggcacaa tgatacgctg tgccaggtca tttggtggtc tcatggatga
3961 aatgaaggca aactgtgtga acctaccagt cagagttggc atgaatatga atgaagatgg
4021 tcccataatc tttgaaaagc attcaaagta cagatatcac tatgatgctg actattccag
4081 gtgggactca acacaacaga gatgtgtcct gggtactgca cttgatataa tggttagata
4141 ctcagccgaa ccagaattag cacaaatcgt ggctgaggac ttgctgtcgc ctagcgtcat
4201 ggacgttggc gacttcaaaa tcaccataaa tgagggctta ccatcaggag ttccgtgcac
4261 atcccagtgg aactcaatag ctcattggct gttaacactc tgtgccatgt cagaagtctc
4321 aggactgtca ccagatgtgg tacagtcaaa ttcatgcttc tccttctatg gggatgatga
4381 aatagtcagc actgacatca aattggaccc ccaaaaactg actgacaagt tgagagagta
4441 tggcttaatt ccaactaggc ccgacaaaac agaaggacca cttataatca gagagagtct
4501 agaaggccta acattcttaa ggagggatgt gtgcagagac ccagcagggt ggtatggcaa
4561 acttgaccaa tcatcaatca tgagacagtt atactggaca aaaggaccca atcatgagga
4621 ccccaatgaa acaatgatcc cacattccca gaggccagtg caattgatgt ccctacttgg
4681 tgaggcggcc ctacacggac cgacattcta taagagagtt agcaagttgg tcatcactga
4741 attaaaggaa ggtggaatgg atttctatgt gcccagacaa gaacctatgt ttagatggat
4801 gagattctct gacttgagca cgtgggaggg cgatcgcaat ctggctcccg aaagtgtgaa
4861 tgaagatggc gtcgaatgac gccgctccat ctaatgatgg tgcagccggt ctcgtaccag
4921 agatcaacaa cgagacaatg gctttggaac cagtggcagg aggagcaatt gcagccccac
4981 taactggaca aacaaatttc attgatccct ggattagagg taattatgtg caagcaccaa
5041 atggtgaatt tacagtgtcc cccagaaatt cgcccggtga aattttgctt aatttagaat
5101 taggccctga actcaaccca ttcttgtccc atctatctag aatgtacaat gggtatgctg
5161 gcggtatcga tgtccaagtc atcatggcag gcaatgcctt caccgctggt aagatcatct
5221 ttgcagcaat acctccccac ttccccgtgg aaaatcttag tccccctcag atcactatgt
5281 tccctcatat tatagtggat gtcaggaccc ttgaacccat aaatatccct gtaccagatg
5341 ttaggaacaa cttcttccat tataaccaaa acaatgagtc tcgcatgaga ctggtggcca
5401 tgttgtacac ccctcttagg tctaatgggt ctgctgaaga tgttttcaca gtgtcatgta
5461 gggtcttaac aaaaccatct gcagactttg aatttaatta tctagtcccc ccaactgtag
5521 agtcaaggac taaacccttc acaataccaa tactcacaat tggggaaatg acaaattcaa
5581 gattcccagt gcctattgac atgcttcata ccagtccaac agaaaacatt gttgttcaac
5641 cacaaaatgg taggtgtacc atagatggtg agttgcttgg caccactcaa ctgatcactt
5701 ccaatatctg ttcattcaga ggatccatct cagggcatga aggcaatgat gaccaacacc
5761 tgtggcactt caacatcaca aaccccaatg gcactccatt tgaccccact gaagatgtgc
5821 ctgcccccct cggaacccca gatttcaggg gtcaattgta cggtgtcatc tcccagcgag
5881 atagagaggg aacaccctcg gaaaataatc agaaggcaaa caggtcccac cagggagtga
5941 tttcaacaat ctcaccaaaa tttgtcccca agttaggttc agtcatgatt ggcacatgga
6001 ctactgatga tatcaagaac cagccatcca agttcacccc aattggcctc aatgatgatg
6061 ataattttaa acaatgggaa ctgccaaatt attctggggc gctcaccctc aacatggggt
6121 tggcacctag tgttttcccc acctatcctg gtgaacaaat ccttttcttc cgctcctatc
6181 tgccattgaa gggagggtac ggtagtccat ttattgactg cctagtacct caagaatggg
6241 tcgctcactt ctaccaggag tcagcacccg cacaaacaga tgtggcccta atcaggtatg
6301 taaaccccga aacaggacgt gtccttttcg aggccaaatt gcacagacag gggttcatca
6361 ccgttgccaa gagcggcgac agccccatca atgtgcctgc caatggttat tttaggtttg
6421 attcttgggt caatcagttt tactctcttg cccccatggg aactgggaac gggcgcagaa
6481 ggattcagta atggctggag cttttatagc aggattggct ggtgacatgc tcacaaacac
6541 tgtagggtct ctagttaatg caggagctaa tgctattaat cagaaaattg attttgagaa
6601 taataaatat ttccaaaatg catcatttgc ccatgataag gatatgctga atgcacaggt
6661 tgaggcaacc aagaaacttc aggctgacat gattgccatc aagcaagggg tattagtcgc
6721 gggcggcttt tcccctactg atgcagcccg gggagcaatc aacgccccca taacaaaagc
6781 tctagattgg aatggaacaa ggtactgggc gccaaatgcc acctccacca cttcgatgtc
6841 aggtggcttc acaggacagg tttcgcacag gaccacacca aattttaaaa ccaaccaggc
6901 ccccaagccc ccacctagta gtgggtcttc agtaaggtcc aactcaaccc aactcactag
6961 tctgagctcc cactcctctg ggtcatctcg atccagcgga tcaacagtgg ttagctcttt
7021 gccttcttct agcaggacta gggattgggt caatcaacaa aatctcaatt tggaaccaca
7081 tttgcctggg tctctcagaa cagcttttgt cactccacca tctagttcag cctctagttc
7141 aggcacagtc tcaaccgtgc ctaagggtgt tttggactcc tggacatctg cattcaacac
7201 acgcagacag ccgctttttg cacaccttcg cagaaggggg gagtcaaatg tttagtgaaa
7261 aga
//