Typing tool
|
Complete norovirus genomes
KY496328 | GII.23 | ||
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GII.P23 |
ORF1: 1..4879 ORF2: 4860..6491 ORF3: 6491..7255LOCUS KY496328 7263 bp RNA linear VRL 20-OCT-2017 DEFINITION Norovirus GII strain Hu/GII.P23_GII.23/2010/PE/PE1848, complete genome. ACCESSION KY496328 VERSION KY496328.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7263) AUTHORS Collins,N., Vinje,J., Chhabra,P. and Aswath,K. TITLE Direct Submission JOURNAL Submitted (23-JAN-2017) NCIRD / DVD / GRVLB, CDC, 1600 Clifton Rd NE, Atlanta, GA 30329, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. 8 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7263 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Hu/GII.P23_GII.23/2010/PE/PE1848" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:122929" /country="Peru" /collection_date="23-Dec-2010" /note="genotype: GII" CDS <1..4879 /codon_start=2 /product="polyprotein" /protein_id="ARQ32573.1" /translation="PPPPNGEDIVIKYTKQGDTLSGVPTVSTADISPLHDTAYSVPPL DQREKVDAKEPLTGSILEMWDGEIYHYGLYVERGQVLGVHKPPAAVSIARIELTPLSL YWRTVYTPPYLVAPDTLKKLHGETFPYTAFDNNCYSFCCWVLDLNDSWLNRKFVSRTT GFYRPYQEWNRKPLPTMDEGKLKKVANVFLCGLSGLFTRPIKDLIGKLKPLNILNIVT NCDWTFPGVVEAIILLAELFGIFWTPPDISAFVASLLGDYEMQGPEDIATEIVPVILG GIGMVLGFTKEKIGRLLGSAASSLRACREIGNYGIEVVKLVMKWFFPTKSEVNEMEMV RTIEDAVLDFEAIENNHMTALLKDKNSLATFLRALDMEEEKARKLSTKSASPDIVGTI NALLARIAAARSLVHRAKEEMSSRMRPVVIMISGRPGIGKTHLARDLAKKMAATLSGD QRVGLVPRNGVDHWDAYKGERIVLWDDYGMSNPVADALRLQELADTCPLTLNCDRIEN KGKVFDSDTLIITTNLANPAPLDYVNFEACSRRIDFLVYADSPSVDKAKRDFPGQPDM WKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTHSLIARATGLLHERLDEF DLQGQELPVYNFDQNKVAAFRKLAADNKYGLMDTLRAGNKLKEVKNLDQFKEAVKDIR IKPCRIIYNSMAYDLDSNGSGRVNVKKVGDQRVQANNELNSALNKLRGARIRYYVKCF QEMVYSLLQIAGAAFVTSRMAQRMNVNKLWTKPEKQQEASAGPPTPPTEEWTITPMDT IQEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERQGKYSIEEYLQDRDRYYE ELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRREERATLGLVTGSEIRKRNPDDFKPK GKLWADDDRSVNYNERIDFEAPPSLWSRIVNFGSGWGFWVSSNLFITSTHVIPQNMSE AFGVPTSQIQIHRSGEFCKMRFPKAIRPDVSGMILEEGAPEGTVVTILIKRPTGELMP LAARMGTHATMKIQGRMIGGQMGMLLTGSNAKNMDLGTVPGDCGCPYVYKRGNDWVVI GVHTAAARGGNTVICATQGPDGEATLEGGDNHGTYCGAPILGPGNAPKLSTKTKFWRS SNTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTAPRGKPPRPAVLEAAKET ICNVLEQTIEPPQKWSYAQACASLDKTTSSGHPHHKKKNDNWNGESFTGVLADQASKA NLMYEQGKHMQPVYTGALKDELVKTSKIYETIKKRLLWGSDLGTMIRCARSFGGLMDE MKANCVNLPVRVGMNMNEDGPIIFEKHSKYRYHYDADYSRWDSTQQRCVLGTALDIMV RYSAEPELAQIVAEDLLSPSVMDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCAM SEVSGLSPDVVQSNSCFSFYGDDEIVSTDIKLDPQKLTDKLREYGLIPTRPDKTEGPL IIRESLEGLTFLRRDVCRDPAGWYGKLDQSSIMRQLYWTKGPNHEDPNETMIPHSQRP VQLMSLLGEAALHGPTFYKRVSKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEG DRNLAPESVNEDGVE" CDS 4860..6491 /codon_start=1 /product="capsid VP1" /protein_id="ARQ32571.1" /translation="MKMASNDAAPSNDGAAGLVPEINNETMALEPVAGGAIAAPLTGQ TNFIDPWIRGNYVQAPNGEFTVSPRNSPGEILLNLELGPELNPFLSHLSRMYNGYAGG IDVQVIMAGNAFTAGKIIFAAIPPHFPVENLSPPQITMFPHIIVDVRTLEPINIPVPD VRNNFFHYNQNNESRMRLVAMLYTPLRSNGSAEDVFTVSCRVLTKPSADFEFNYLVPP TVESRTKPFTIPILTIGEMTNSRFPVPIDMLHTSPTENIVVQPQNGRCTIDGELLGTT QLITSNICSFRGSISGHEGNDDQHLWHFNITNPNGTPFDPTEDVPAPLGTPDFRGQLY GVISQRDREGTPSENNQKANRSHQGVISTISPKFVPKLGSVMIGTWTTDDIKNQPSKF TPIGLNDDDNFKQWELPNYSGALTLNMGLAPSVFPTYPGEQILFFRSYLPLKGGYGSP FIDCLVPQEWVAHFYQESAPAQTDVALIRYVNPETGRVLFEAKLHRQGFITVAKSGDS PINVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ" CDS 6491..7255 /codon_start=1 /product="capsid VP2" /protein_id="ARQ32572.1" /translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQKIDFENNKYFQNA SFAHDKDMLNAQVEATKKLQADMIAIKQGVLVAGGFSPTDAARGAINAPITKALDWNG TRYWAPNATSTTSMSGGFTGQVSHRTTPNFKTNQAPKPPPSSGSSVRSNSTQLTSLSS HSSGSSRSSGSTVVSSLPSSSRTRDWVNQQNLNLEPHLPGSLRTAFVTPPSSSASSSG TVSTVPKGVLDSWTSAFNTRRQPLFAHLRRRGESNV" ORIGIN 1 ccccccaccc ccaaatggtg aggacatagt catcaagtat accaaacaag gggatacact 61 cagtggagtg cccaccgtct ccactgcaga catatcccca ttgcatgaca ccgcatatag 121 tgtccctccc ttggaccaga gggaaaaggt ggacgcaaaa gaacccctaa ctgggtcaat 181 acttgagatg tgggatggtg agatctacca ttacgggctc tatgtggaga gagggcaagt 241 tctcggtgtg cacaaaccac cagctgctgt gagcattgca cgcatcgaac taacccccct 301 ctctctatac tggagaacag tttacacacc tccctacctg gtagctcctg acacccttaa 361 gaagctccac ggtgagacat tcccctacac agcatttgat aacaactgct actcattttg 421 ttgttgggtt ctggacctga acgactcgtg gctcaataga aaattcgtgt caaggaccac 481 aggcttctac agaccctacc aggagtggaa caggaaacca ttgccaacca tggacgaagg 541 aaagcttaag aaggtggcca acgtcttcct gtgtggcctg tctgggcttt tcaccaggcc 601 catcaaagat ctcataggca aactgaaacc actgaacatt cttaacattg tcaccaattg 661 tgattggacg ttcccgggag tcgtagaggc gatcatcctc ctcgcagagc tctttgggat 721 cttctggaca ccaccagaca tatctgcctt cgtcgcctct ctgttaggtg actatgagat 781 gcaaggcccc gaggacattg cgaccgagat agtcccagtc attctaggtg gtattggcat 841 ggtacttggt ttcactaaag agaagatcgg ccggttgctg ggttccgcgg catcatcact 901 cagggcctgc agggaaatcg gcaactatgg gatagaggtg gtaaaattgg tgatgaaatg 961 gttctttcca accaaaagtg aggtcaatga gatggaaatg gtcagaacaa tagaggacgc 1021 agtgctcgac tttgaggcaa ttgaaaacaa tcacatgaca gctctactca aagacaaaaa 1081 tagcctggcc accttcctca gggcattgga tatggaagaa gagaaagcgc ggaaactatc 1141 aaccaaatcc gcgtcccccg acatagtcgg cactataaat gcactcctgg cgagaattgc 1201 cgctgctagg tcactagtgc acagggctaa ggaagagatg tcatcaagga tgcgtcctgt 1261 tgtcatcatg atatccgggc gacctgggat agggaaaacc catctggccc gcgacctagc 1321 taagaagatg gcagccactc tgtcaggtga tcagagagtg ggcctggtcc caaggaatgg 1381 tgttgaccat tgggatgcat acaagggaga aaggatcgtc ctgtgggatg attacggtat 1441 gagcaacccc gtggcagacg ccctccgact ccaggaactc gccgatacat gccccctgac 1501 actcaactgt gataggatag agaacaaagg aaaggtcttt gacagtgaca ccttgatcat 1561 cactactaat ctggccaacc cggcccccct ggactatgtg aactttgaag cttgctcacg 1621 ccgcatagat ttcctcgttt atgcggactc tccttcagtt gataaggcaa agagagactt 1681 cccaggccaa ccagacatgt ggaaagacgc cttcaaacca gacttctcac acataaagct 1741 acaactggca ccacagggag gatttgacaa gaatgggaac accccacatg ggaagggcgt 1801 catgaaaaca ctaaccacac actccctcat agcccgtgcc actggtttac tccatgagag 1861 attagatgaa tttgacttac agggtcaaga attgccagtc tacaacttcg accagaacaa 1921 ggtggccgct ttccggaaac tagcggccga caacaagtat ggtctcatgg acactttgag 1981 ggcaggcaac aaattgaagg aggttaagaa tctagaccaa ttcaaggaag cggtgaagga 2041 catccgcata aagccttgca ggataatcta caactcaatg gcttatgatc tggattcaaa 2101 tgggtcaggc agagtcaatg ttaagaaagt gggagaccaa agagtccagg ccaacaatga 2161 actcaactcc gcactcaaca aactgcgcgg ggctagaatc agatactatg tgaagtgctt 2221 ccaggaaatg gtctactccc ttctccagat tgctggtgcg gccttcgtta catcaagaat 2281 ggcacaaaga atgaatgtca acaagctgtg gacaaaacca gaaaaacaac aggaggcctc 2341 tgcagggccc cccacccccc caactgaaga gtggaccata acaccaatgg acacgatcca 2401 ggaaggtaag aagggcaaga acaaaagtgg taggggtaag aaacacactg cattctctag 2461 taagggcctt agtgatgagg agtatgatga gtacaagaga atcagggagg agcgccaagg 2521 gaagtactcc atagaagaat acctccagga cagggaccgg tactatgaag aattggccat 2581 agccaaagca acagaggagg acttctgtga agaggaggag atcaagataa ggcaaagaat 2641 tttccgccca accaggaaac agcgtaggga ggagagagcc actctaggcc ttgtcacagg 2701 cagtgaaatt agaaagagga accccgatga tttcaaacca aaaggtaaac tgtgggctga 2761 tgatgaccgt agtgtcaact acaatgaaag gatagacttt gaagcccctc ccagcctctg 2821 gtccagaata gtcaacttcg gttcgggttg gggcttctgg gtctcatcaa atttgttcat 2881 cacctccaca cacgtcatcc cacaaaacat gtctgaggct ttcggggtac caacaagcca 2941 aatccaaata cataggagtg gggagttctg caaaatgagg ttcccaaagg ccatcaggcc 3001 cgatgtctct ggcatgattc ttgaggaagg cgcgcctgaa ggcacggtgg tgaccatatt 3061 gatcaaaaga ccaactggtg aactcatgcc attggcagct cgcatgggca cccacgccac 3121 catgaaaata caggggagga tgattggagg tcaaatgggg atgcttctca caggatccaa 3181 cgccaaaaac atggaccttg gcaccgtgcc tggtgattgt ggctgccctt atgtctacaa 3241 aagaggcaat gattgggtag ttatcggggt gcacaccgcc gccgccaggg gtggcaacac 3301 ggtgatctgt gccactcagg ggccagatgg tgaagccaca cttgagggtg gcgacaacca 3361 tgggacctat tgtggcgcgc caatattagg accaggaaac gccccgaaac tcagcaccaa 3421 gaccaaattc tggagatcct ccaacactcc gctcccccct ggcacatacg aaccagccta 3481 cctcggtggt aaggacccaa gggtcaaggg cggcccatca ctacaacaag tcatgaggga 3541 gcaactcaag cccttcactg ccccacgtgg aaaaccacca aggccagcgg ttttggaggc 3601 cgctaaggaa accatctgca atgtgctgga gcaaaccatt gaaccgcccc agaagtggtc 3661 ctatgcacag gcttgtgcct ccctagacaa aacaacctca agtggccacc cccaccacaa 3721 gaagaaaaat gacaattgga acggggaatc cttcactggt gttctggctg atcaggcttc 3781 aaaagcaaac ctcatgtatg agcaagggaa acacatgcag cctgtgtaca caggcgcgct 3841 caaagatgag cttgtcaaaa ccagcaagat ctatgaaacc attaagaaga gactcttgtg 3901 gggttcagac ctcggcacaa tgatacgctg tgccaggtca tttggtggtc tcatggatga 3961 aatgaaggca aactgtgtga acctaccagt cagagttggc atgaatatga atgaagatgg 4021 tcccataatc tttgaaaagc attcaaagta cagatatcac tatgatgctg actattccag 4081 gtgggactca acacaacaga gatgtgtcct gggtactgca cttgatataa tggttagata 4141 ctcagccgaa ccagaattag cacaaatcgt ggctgaggac ttgctgtcgc ctagcgtcat 4201 ggacgttggc gacttcaaaa tcaccataaa tgagggctta ccatcaggag ttccgtgcac 4261 atcccagtgg aactcaatag ctcattggct gttaacactc tgtgccatgt cagaagtctc 4321 aggactgtca ccagatgtgg tacagtcaaa ttcatgcttc tccttctatg gggatgatga 4381 aatagtcagc actgacatca aattggaccc ccaaaaactg actgacaagt tgagagagta 4441 tggcttaatt ccaactaggc ccgacaaaac agaaggacca cttataatca gagagagtct 4501 agaaggccta acattcttaa ggagggatgt gtgcagagac ccagcagggt ggtatggcaa 4561 acttgaccaa tcatcaatca tgagacagtt atactggaca aaaggaccca atcatgagga 4621 ccccaatgaa acaatgatcc cacattccca gaggccagtg caattgatgt ccctacttgg 4681 tgaggcggcc ctacacggac cgacattcta taagagagtt agcaagttgg tcatcactga 4741 attaaaggaa ggtggaatgg atttctatgt gcccagacaa gaacctatgt ttagatggat 4801 gagattctct gacttgagca cgtgggaggg cgatcgcaat ctggctcccg aaagtgtgaa 4861 tgaagatggc gtcgaatgac gccgctccat ctaatgatgg tgcagccggt ctcgtaccag 4921 agatcaacaa cgagacaatg gctttggaac cagtggcagg aggagcaatt gcagccccac 4981 taactggaca aacaaatttc attgatccct ggattagagg taattatgtg caagcaccaa 5041 atggtgaatt tacagtgtcc cccagaaatt cgcccggtga aattttgctt aatttagaat 5101 taggccctga actcaaccca ttcttgtccc atctatctag aatgtacaat gggtatgctg 5161 gcggtatcga tgtccaagtc atcatggcag gcaatgcctt caccgctggt aagatcatct 5221 ttgcagcaat acctccccac ttccccgtgg aaaatcttag tccccctcag atcactatgt 5281 tccctcatat tatagtggat gtcaggaccc ttgaacccat aaatatccct gtaccagatg 5341 ttaggaacaa cttcttccat tataaccaaa acaatgagtc tcgcatgaga ctggtggcca 5401 tgttgtacac ccctcttagg tctaatgggt ctgctgaaga tgttttcaca gtgtcatgta 5461 gggtcttaac aaaaccatct gcagactttg aatttaatta tctagtcccc ccaactgtag 5521 agtcaaggac taaacccttc acaataccaa tactcacaat tggggaaatg acaaattcaa 5581 gattcccagt gcctattgac atgcttcata ccagtccaac agaaaacatt gttgttcaac 5641 cacaaaatgg taggtgtacc atagatggtg agttgcttgg caccactcaa ctgatcactt 5701 ccaatatctg ttcattcaga ggatccatct cagggcatga aggcaatgat gaccaacacc 5761 tgtggcactt caacatcaca aaccccaatg gcactccatt tgaccccact gaagatgtgc 5821 ctgcccccct cggaacccca gatttcaggg gtcaattgta cggtgtcatc tcccagcgag 5881 atagagaggg aacaccctcg gaaaataatc agaaggcaaa caggtcccac cagggagtga 5941 tttcaacaat ctcaccaaaa tttgtcccca agttaggttc agtcatgatt ggcacatgga 6001 ctactgatga tatcaagaac cagccatcca agttcacccc aattggcctc aatgatgatg 6061 ataattttaa acaatgggaa ctgccaaatt attctggggc gctcaccctc aacatggggt 6121 tggcacctag tgttttcccc acctatcctg gtgaacaaat ccttttcttc cgctcctatc 6181 tgccattgaa gggagggtac ggtagtccat ttattgactg cctagtacct caagaatggg 6241 tcgctcactt ctaccaggag tcagcacccg cacaaacaga tgtggcccta atcaggtatg 6301 taaaccccga aacaggacgt gtccttttcg aggccaaatt gcacagacag gggttcatca 6361 ccgttgccaa gagcggcgac agccccatca atgtgcctgc caatggttat tttaggtttg 6421 attcttgggt caatcagttt tactctcttg cccccatggg aactgggaac gggcgcagaa 6481 ggattcagta atggctggag cttttatagc aggattggct ggtgacatgc tcacaaacac 6541 tgtagggtct ctagttaatg caggagctaa tgctattaat cagaaaattg attttgagaa 6601 taataaatat ttccaaaatg catcatttgc ccatgataag gatatgctga atgcacaggt 6661 tgaggcaacc aagaaacttc aggctgacat gattgccatc aagcaagggg tattagtcgc 6721 gggcggcttt tcccctactg atgcagcccg gggagcaatc aacgccccca taacaaaagc 6781 tctagattgg aatggaacaa ggtactgggc gccaaatgcc acctccacca cttcgatgtc 6841 aggtggcttc acaggacagg tttcgcacag gaccacacca aattttaaaa ccaaccaggc 6901 ccccaagccc ccacctagta gtgggtcttc agtaaggtcc aactcaaccc aactcactag 6961 tctgagctcc cactcctctg ggtcatctcg atccagcgga tcaacagtgg ttagctcttt 7021 gccttcttct agcaggacta gggattgggt caatcaacaa aatctcaatt tggaaccaca 7081 tttgcctggg tctctcagaa cagcttttgt cactccacca tctagttcag cctctagttc 7141 aggcacagtc tcaaccgtgc ctaagggtgt tttggactcc tggacatctg cattcaacac 7201 acgcagacag ccgctttttg cacaccttcg cagaaggggg gagtcaaatg tttagtgaaa 7261 aga //