Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| KY424349 | GII.17 | |
|
|---|---|---|---|
| GII.P17 |
ORF1: 1..5078
ORF2: 5059..6681
ORF3: 6681..7460
LOCUS KY424349 7527 bp RNA linear VRL 19-APR-2018
DEFINITION Norovirus GII.17 isolate Hu/GII.17/GaithersburgD7/2014/US
nonstructural polyprotein gene, partial cds; and major capsid
protein VP1 and minor capsid protein VP2 genes, complete cds.
ACCESSION KY424349
VERSION KY424349.1
KEYWORDS .
SOURCE Norovirus GII.17
ORGANISM Norovirus GII.17
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7527)
AUTHORS Parra,G.I., Squires,R.B., Karangwa,C.K., Johnson,J.A., Lepore,C.J.,
Sosnovtsev,S.V. and Green,K.Y.
TITLE Static and Evolving Norovirus Genotypes: Implications for
Epidemiology and Immunity
JOURNAL PLoS Pathog. 13 (1), e1006136 (2017)
PUBMED 28103318
REFERENCE 2 (bases 1 to 7527)
AUTHORS Parra,G.I., Squires,R.B., Karangwa,C.K., Johnson,J.A., Lepore,C.,
Sosnovtsev,S.S. and Green,K.Y.
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2017) LID, NIAID, NIH, 50 South Drive, B50/R6316,
Bethesda, MD 20892, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Bowtie v. 2; Sequencher v. 5
Sequencing Technology :: Sanger dideoxy sequencing; IonTorrent
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7527
/organism="Norovirus GII.17"
/mol_type="genomic RNA"
/isolate="Hu/GII.17/GaithersburgD7/2014/US"
/host="Homo sapiens"
/db_xref="taxon:552592"
/geo_loc_name="USA"
/collection_date="Dec-2014"
/note="genotype: GII.17"
CDS <1..5078
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="APU54810.1"
/translation="VAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQPPPGETKQ
IQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPDAQNTAYSV
PPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIEITP
LSLYWRVVYTPQYLIAPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQ
RTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRPLNILN
ILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAVELVPV
VMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEANEL
AMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIV
GTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVASTL
SGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCDR
IENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPGQ
PDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGLLHERM
DEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKNVKTLDELKQAIK
NISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHLRSARIRYYV
KCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPKPRDEDD
LTIDSRDIRVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYL
QDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKR
NPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITSTH
VIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSILIK
RTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYK
RGSDLVVIGVHTAAARGGNTIICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKLS
TKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPN
VLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGK
LADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCAR
AFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVL
EAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIAH
WLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTR
PDKTEGPLVVSEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSET
MIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRF
SDLSTWEGDRNLAPSFVNEDGVE"
CDS 5059..6681
/codon_start=1
/product="major capsid protein VP1"
/protein_id="APU54811.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSINLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 6681..7460
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="APU54812.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 ccgttgctgg caaaaacaac aacaacgaca aggaaaaatc ttcaagtgac agcttgtttg
61 ctaacatgtc tgttactttt aagaaagccc tcggggcgcg gtctaaacaa ccgcccccgg
121 gagaaacaaa acaaatacaa aaaccaccaa ggccaccgac accggaattg gtgaagagaa
181 tacctccacc cccacccaat ggcgaggatg aaccagggat agtgtacaag gtgggagagg
241 gtgtgtctgg gctgcccgac ctaacaactg tggtacaacc tgacgcacag aacacagctt
301 atagtgttcc cccacttagc cagagagaag tcggcgaagc taaagaaccg ctgcctggct
361 ccattctgga aatgtgggat ggtgagatct accactatgg gctgtatgtt gagcgggggc
421 atgtgctcgg agtacacaaa ccacctgctg caataagcct tgccaaaatt gaaataacac
481 cactgtctct ctactggaga gtggtctaca ctccccagta tttgatagct ccaggaactc
541 ttaagaactt gagtggagag actttcccat acacggcctt tgacaacaac tgttatgcct
601 tctgttgttg ggtcctagac ctcaacgact cctggcttag caggagaatg atccaaagaa
661 caactggatt cttcaaacct tatcaggatt ggaacagaaa acccttacca accatggatg
721 aaccgaaaat caagaaggcc gcgaatgctg ttctatgcgc tctctcctca ctcttcacta
781 gacccattaa ggacatcatt ggaaagctta gaccactgaa cattcttaat atactggcaa
841 cctgcgattg gacttttgca ggcatagtgg aatccttgat ccttcttgct gaactctttg
901 gggtgttctg gacaccccca gatgtgtctg cgatgattgc tcccttactc ggtgactacg
961 agatgcaagg ccccgaagac ctggccgtgg aacttgtgcc cgtggtgatg ggaggaatag
1021 gtttggtgtt aggattcacc aaagaaaaga tcggcaagat gctttcatca gcagcaacca
1081 cacttagggc ctgcaaggat ctaggatctt atggattgga gatactcaaa ttggtcatga
1141 agtggttctt ccccaagaag gaggaggcta acgaactagc catggtgaga gccattgagg
1201 atgcagtcct ggatttggag gcaatagaaa acaatcacat gaccaccctt ctcaaggata
1261 aagacagcct ggccacatac atgaggactc ttgacttgga agaagagaaa gcaaggaaac
1321 tgtcaaccaa atcggcgtca cctgacatcg tgggtacaat aaacgcatta ttggctagga
1381 tagcagccgc caggtcactg gtccacaagg ctaaggagga gctctcgagc agacagagac
1441 ctgttgttgt aatgatatca ggtagaccag gtataggaaa gacccatctg gccagagagc
1501 tagccaagaa agttgcgtca acactgtcag gcgaccaaag gattggactg gtacctagaa
1561 atggcgtcga ccattgggac gcctacaagg gagaaagggt ggttctgtgg gatgattatg
1621 gtatgagcaa ccctatacag gacgcactga ggctccaaga attggctgac acctgtcctc
1681 tgaccctaaa ttgtgacagg attgaaaaca aaggaaaagt gttcgacagt gatgccataa
1741 ttataacaac caaccttgca aacccagcac cactagacta tgtcaacttt gaggcctgct
1801 ctagacgcat agacttcttg gtgtatgcag acgcacctga cattgagaag gctaagcgtg
1861 acttccctgg ccaaccagat atgtggaaag accatttcag accagacttc tcacacatta
1921 aacttcagct ggcaccacag ggaggttttg acaaaaatgg caacacccca catggcaaag
1981 gtgtggtgaa gtccctgacg attggttctc tgatcgccag ggcctctggc ttgctccacg
2041 agagaatgga tgaattcgag ctccaaggct ctgacctgcc aaccttcaat tttgaccgca
2101 acaaagtcgc cgccttcaga caattagcag ctgaaaacaa atatggtctt atggacacgc
2161 tgagggtcgg caaccaactg aaaaatgtta agaccctgga tgagctgaag caggccataa
2221 agaacatcag tatcaagaag tgtcagatag tgtataatgg atgcacctat accatggaat
2281 ctgatgggag gggcaaggtt gtggttgaaa aggtacaaaa cgcaacagtt caaaccaaca
2341 atgaacttgt aggggcgctc caccacctga gatctgcaag gataaggtac tatgttaaat
2401 gtttccaaga agccatttac tctctactcc aaattgctgg tgcagccttc gtcacctcac
2461 gcatcgtgag gcgcatgaac atatcaaacc tctggtcgaa gccacccatc gaggagggtg
2521 atgagcctga agacagagga ggatgcccca agcccaggga tgaagatgac ctcactattg
2581 actctagaga cattagagtg gaagggaaga agggcaagaa caagtctggc cggggcaaga
2641 aacacacagc cttctcttcc aagggcctca gtgatgaaga gtacgatgag tacaagagaa
2701 tcagagagga gaggaatggc aaatactcaa tagaggaata cctccaagat agggacagat
2761 actatgaaga gcttgccatt gctaaggcca ctgaggagga cttctgtgag gaggaggaga
2821 tcaaaatccg ccagagaatc ttccgaccca ccaggaagca gcggaaagag gaaagggcca
2881 cgcttgggct tgtcacagga tcggaaatca gaaagaggaa tccagatgac tttaaaccaa
2941 aaggaaaatt gtgggctgat gacaacagga gcgtggatta caatgagagg atagattttg
3001 aggctccccc gagtgtttgg tctaggatag tcaactttgg cacaggctgg ggattctggg
3061 tttctccaag tctctttata acttcaacac atgtcatacc aaaaggaatc actgaggcct
3121 ttggagtgcc tataaaccaa atccaaattc acaaatctgg agaattttgc cgcttgcggt
3181 ttccaaagcc aattaggcca gacgtgagtg ggatgatctt ggaagagggt gcccctgaag
3241 gcactgttgt gtctattctc atcaaaagga caacagggga gctgatgcct cttgcagtca
3301 gaatggggac tcatgccaca atgaaaatcc aaggtagaac ggtgggtggt cagatgggta
3361 tgcttctcac tggctcaaat gctaaaagca tggatctagg cacaacgcca ggtgactgcg
3421 gatgtccata catatacaaa aggggcagtg accttgtggt cattggggtg cacactgcag
3481 cagctcgtgg aggcaacacg atcatatgtg ccacacaggg aagtgaaggt gaagccactc
3541 ttgaaggagg tgacaacaag ggtacctatt gtggagcccc cattttggga cctggcaatg
3601 caccaaaatt gagcacaaag acaaaattct ggagatcctc taacgcaccg cttcccccag
3661 gtacttatga accagcatac cttggtggga gagacccgcg cgtgaaggga ggtccatctc
3721 tgcaacaagt tatgagagac caacttaagc cttttacaga gcccagaggg aagccaccaa
3781 acccaaatgt cttagagtca gcaaagaaga ctatcatcaa tgttctggaa caaaccattg
3841 acccccctca aaagtggtca tatgcccaag cctgtgcatc cctcgacaag acaacctcca
3901 gtggataccc gcaccacgtc cggaagaatg actattggag tggtgaatcc ttcacaggaa
3961 aacttgcaga tcaggcttca aaagcaaatc tcatgtatga ggaaggcaag cacatgcaac
4021 cagtttacac cgcagcactc aaagacgagc tcgtgaaaac tgataaaatt tatggcaaaa
4081 tcaagaaaag actcctgtgg ggttctgacc tctccacaat gattcgatgc gccagagcat
4141 ttggtggtct catggatgaa ttcaaagcaa attgtattac actccctatc agagttggta
4201 tgaatatgaa tgaagatggt cccataatat ttgagaaaca ctccaggtac aggtaccact
4261 atgatgctga ttactcccgc tgggactcca cacaacagcg ggcagtgctg gaagcggcac
4321 ttgaaatcat ggtgagattt tctgctgagc cacagctggc acaaatagtg gcagaggacc
4381 tgctgtcacc aagtgtggtt gatgtgggcg atttcaaaat cgctatcaat gaaggcctac
4441 catctggcgt gccttgcacc tcacaatgga attctattgc ccactggtta cttaccttgt
4501 gtgccctttc tgaagtgaca ggattaggtc ctgacatcat acaagctaac tccatgtact
4561 ctttctatgg tgatgatgag attgtgagca cagacataaa attggaccca gagaaattga
4621 ccgcaaagct caaagaatat ggccttaaac ccactcggcc cgacaaaact gaggggccgt
4681 tggtggttag tgaagacctg aatgggttga ctttcctccg ccgaacagtc acccgtgatc
4741 cagcaggttg gtttggaaag ttggaccaaa actccatcct caggcagttg tactggacaa
4801 gaggacccaa ccatgaagac cccagtgaga ccatgatacc acacgcacaa agacctgtgc
4861 agctcatggc actactagga gaatcctccc tacatggacc ctcattttac agcaaggtta
4921 gcaaattagt catatctgaa cttaaagagg gaggaatgga tttttatgtg cccagacaag
4981 agtcaatgtt cagatggatg aggttctcag atctaagcac atgggagggc gatcgcaatc
5041 tggctcccag ttttgtgaat gaagatggcg tcgaatgacg ccgctccatc taatgatggt
5101 gctgctggtc tcgtaccaga gggcaacaac gagacccttc ccctagaacc agttgcgggc
5161 gcagctatag ccgcacccgt cactggccaa aataacataa ttgacccctg gattagaaca
5221 aattttgtgc aagcaccaaa tggagagttc acagtgtcac ccagaaactc tcctggagaa
5281 attttattaa acttagagtt gggccctgat ttgaaccctt atttggctca tttgtcaagg
5341 atgtacaatg ggtatgctgg tggagtggaa gttcaggttc tcctggcagg gaacgcgttc
5401 actgccggaa agatcctctt cgccgccgtc ccgccaaatt tcccagtgga attcttaagc
5461 ccagcccaga tcacaatgct cccacattta atagtagatg ttaggactct tgaaccaatt
5521 atgatcccac tccctgatgt taggaataca ttcttccatt atagtaacca gcctaacagc
5581 cgcatgagat tagtggctat gctctatacc ccgctcagat ctaatggctc aggtgatgat
5641 gtctttactg tctcttgcag ggttttgact aggcctactc ctgattttga gttcacttat
5701 ttagtgccac cttctgttga atctaaaact aagccttttt ctttacctat tttaaccctt
5761 tctgagctca caaattcgag gttcccagtc cccatcgatt cgcttttcac cgcccagaat
5821 aatgtgttgc aggtgcagtg tcaaaatggc aggtgtacac ttgatggtga gttacaaggc
5881 acaacccagt tgctcccatc tggcatctgt gcattcagag gacgggtgac agcacaaatt
5941 aaccaacgtg acaggtggca catgcaactg caaaacctca atggtacaac atatgaccca
6001 actgatgatg tgccagcccc gctgggtaca cctgacttca agggcgtcgt gtttgggatg
6061 gtaagccaaa gaaatgtggg taatgatgcg cctggctcaa ccagagccca acaggcgtgg
6121 gtttcaacct atagccccca atttgtcccc aaattaggtt ctatcaatct tagaattagt
6181 gacaatgatg atttccaatt ccagccgaca aaattcacac cagtgggcgt caatgatgac
6241 gatgatggcc acccgttcag acaatgggaa ttaccaaact attcagggga gcttaccttg
6301 aatatgaatc ttgccccccc agttgctcca aatttccctg gtgaacaatt gttattcttt
6361 agatctttcg tgccatgctc aggaggttac aaccaaggta ttatagattg tcttattccc
6421 caagaatgga tccaacactt ctatcaggaa tcagcaccct cccagtcaga cgtggcccta
6481 atcaggtatg tcaaccctga tacgggacgt acactgtttg aagcaaaatt gcacagatct
6541 ggttacatta ctgtggctca ctctggagac tatcctcttg ttgttccggc taatggacac
6601 tttagatttg attcttgggt aaatcagttt tactcactcg ccccaatggg aactgggaat
6661 gggcgaagga gggctcagta atggctgggg ctttcattgc aggattggca ggcgacatgc
6721 tcacgtcatc tgtgggctcc cttgtgaacg caggggcaaa cgccatcaac caaaagatag
6781 actttgaaaa caacaaacaa ctccagtctg cttcctttca gcatgataaa gagatgctcc
6841 aagcgcaggt gaaggcaacc aagcagctgc aatctgaaat gatagcccta aaacaggggg
6901 ttttggccgc aggcggcttt tcccccactg atgcagcaag gggagccatt ggtgcaccca
6961 tgacaaaggt gcttgactgg tctggcactc gatactgggc gcccaactcc acaaagacaa
7021 ctggttattc gggacaattc acctcttcac ctgtgcacat gtctagccca aatgctccac
7081 aatcaaaacc tgcaaagcct aggtctctag ctccttcctc ttcttctagc agtgtctata
7141 gtatgtacac tcaatctact catttaacat ctggctcttc tagtaatgct tcttctgcct
7201 ctacaaaatt gacaaattta agctctggct cctctcaaaa cagaacagca gagtgggtaa
7261 accaacagag aagtcttagc cctttcatga gtggcgcact taacatctca catgtcacgc
7321 caccctcaag tagggcttcc agttctggga cggtctcgac cgtgcccaag gaagttttgg
7381 actcctggac gtctgcgttt aacacacaca gacagccgct cttcgcacac ctcagagtga
7441 ggggggagtc acgtgtttag tgaaaagaaa taattggcta taatgtgatt tctttctaaa
7501 atttggctaa tttgtgtctt ttaaaaa
//