Typing tool
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Typing tool
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Complete norovirus genomes
| KY424345 | GII.6 | |
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| GII.P7 |
ORF1: 1..5063
ORF2: 5044..6687
ORF3: 6687..7466
LOCUS KY424345 7521 bp RNA linear VRL 19-APR-2018
DEFINITION Norovirus GII.6 isolate Hu/GII.6/HenrytonH1/1971/US nonstructural
polyprotein gene, partial cds; and major capsid protein VP1 and
minor capsid protein VP2 genes, complete cds.
ACCESSION KY424345
VERSION KY424345.1
KEYWORDS .
SOURCE Norovirus GII.6
ORGANISM Norovirus GII.6
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7521)
AUTHORS Parra,G.I., Squires,R.B., Karangwa,C.K., Johnson,J.A., Lepore,C.J.,
Sosnovtsev,S.V. and Green,K.Y.
TITLE Static and Evolving Norovirus Genotypes: Implications for
Epidemiology and Immunity
JOURNAL PLoS Pathog. 13 (1), e1006136 (2017)
PUBMED 28103318
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7521)
AUTHORS Parra,G.I., Squires,R.B., Karangwa,C.K., Johnson,J.A., Lepore,C.,
Sosnovtsev,S.S. and Green,K.Y.
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2017) LID, NIAID, NIH, 50 South Drive, B50/R6316,
Bethesda, MD 20892, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Bowtie v. 2; Sequencher v. 5
Sequencing Technology :: Sanger dideoxy sequencing; IonTorrent
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7521
/organism="Norovirus GII.6"
/mol_type="genomic RNA"
/isolate="Hu/GII.6/HenrytonH1/1971/US"
/host="Homo sapiens"
/db_xref="taxon:499193"
/country="USA"
/collection_date="Dec-1971"
/note="genotype: GII.6"
CDS <1..5063
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="APU54798.1"
/translation="FGSQNSVNDSTNTTPSNKEEVGAFSNIKVGLKKMLGAVPKSTKA
PSGDQHCPTVKIGSKTLAIPPEPPNGEDVVQFDAKSETVRGLPDLTTVQNEHENTPYT
VPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVSGGKALGVHKPPAAISLATIELT
PISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDTWLCRRSI
SRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLGKLKPLNLL
HLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQGPEDLAVELVP
VVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAE
METLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLSTKSSSPDI
VGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARHLAKNIANT
MSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQELADTCPVTLNCD
RIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRIDFLVYAESPEIEKVKRDFPG
QPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARVAGLVHER
RDEFQLQGDNLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKNVKTLEDLKVAL
RDVKFNECEIIYRNSKYRVSSNGKGTVSVHKVEDLTSQTANEVSSALLRLRQARARYY
VSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQEASEPEKETAQGEWEIEP
KDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEEYLQDRDR
YYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTGSDIRKRRPDDF
QPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPKG
IKELFGVDVKQIQIHKSGEFCRFRFPRPIRPDVSGLVLEEGAPEGTVCSILVKRPTGE
MIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIYKRGNDI
IVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPGKAPKLSTKTKF
WRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFAEPRGKPPRPAVLEEA
KKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHIKKNDHWNGESFTGPLADQA
SKANLMYEQAKHMQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMVRCARAFGGL
MDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSILSAAME
VMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTL
SAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPSKLTQKLREYGLVPTRPDKTE
GPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHS
QRATQLMALLGEASLHGPQFYKKVSKMVISEIKSGGLEFYVPRQEAMFRWMRFSDLST
WEGDRNLAPEGVNEDGVE"
CDS 5044..6687
/codon_start=1
/product="major capsid protein VP1"
/protein_id="APU54799.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEGIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLIGQTSRSSDSTDSAPRRRDHPLHVQLKNLDGTQYDPTDEVPAVLG
AIDFKGAVFGVASQRDVSGTQVGATRAHEVHINTTDPRYTPKLGSILMHSESDDFVTG
QPIQFTPVGMGDNDWHQWELPDYSGHLTLNMNLAPAVAPAFPGERILFFRSIVPSAGG
YGSGQIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRNQ"
CDS 6687..7466
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="APU54800.1"
/translation="MASAFLAGLAGDVITNGVGSLINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLTAGGFSPADAARGAVNAPLTKILDWNG
TRYWAPNSMKTTSYSGQFSSSPVHKSPAPSQHTALSKGKLQSDSASVYSSPSTISSQS
THSTALSPGTGSSRSTSTSTATSTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSR
ASSNGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 cctttggcag ccaaaactct gtcaatgaca gtaccaacac caccccttct aacaaagaag
61 aggttggtgc gttctccaac atcaaagttg gacttaagaa aatgctgggt gccgtgccca
121 aaagcaccaa ggcacccagc ggtgaccagc actgccccac tgttaagatt gggtctaaaa
181 cactagcgat cccaccagag cccccaaacg gtgaggacgt tgtgcagttt gatgcaaaat
241 cggaaactgt acgtgggcta cccgacctga cgacagtgca aaatgaacat gaaaacaccc
301 catacacagt ccctccactg agtgaaaggg agcatagacc agccactgag ccactccctg
361 gcacaatact ggagatgtgg gatggtgaat tctatcacta ctccatttat gtcagcggag
421 gcaaagccct gggagtacac aaacccccag cagctataag cctcgcgaca atagaactca
481 cccccatatc cctttactgg cggcctgtct acactccaaa ctacctggtc tgcccagaca
541 cattgaaggg tcttgctggt gagaagtttc cttatacggc cttcagtaac aactgctaca
601 acttctgttg ttgggtgctt gagcttaatg acacgtggct ttgcaggaga agtatttcca
661 gaaccactgg cttcttcaaa ccataccagt cttggaacag gaagcctctc ccaaccgttg
721 acgatggaaa aatcaaaaag gtggccaatg caattctctg tgcacttggc tcactgtttt
781 caaaaccaat caaagatcta ttgggcaaac tcaagccact gaatctacta catctgctcg
841 cgtcgtgtga ctggacattt gcaggtatag tagagacggt catcttaatg gcggaactct
901 tcaacgtctt ttggaccccg ccagatgtct ccaactttat agcctccctg ataggtgatt
961 ttgagctaca agggcctgag gacttagctg tggagcttgt ccccgtggtt atgggaggca
1021 taggaatggt cctcggtttc actgctgaga agattggccg catgttgtca tctgccgcat
1081 caactctacg ggcatgcaaa gatctgggga actacgccct cgacatacta aaactagtca
1141 tgaagtggtt cttcccaaag aaggaagaga aggccgagat ggagacctta agggcgatcg
1201 aggacgccgt tttagacatg gaggcaatag ggaacaacca tctcacgaca ctcctcaagg
1261 ataaggatag cctcactgca ttcatgaaga ctttagacct agaagaggag aaagcaagaa
1321 aactgtcaac aaagtcatcc tcgccagaca tcgtcggcac cattaatgcc atactggcta
1381 gaatagcagc tgctagatcc cttctacaca aggccaagga agagatgttt agcagaatta
1441 gaccagtagt tgtcatgatc tcaggcaggc ctggcattgg taaaacccat atggcgaggc
1501 atctggctaa gaatatagcc aacaccatga gtggagacca gagagttggg cttgtcccgc
1561 gcaacggggt tgaccattgg gatgcctaca ggggagagag ggtagtccta tgggacgact
1621 acggtatggg gaaccctgtc aaagatgcct taacattaca agagctggcc gacacctgcc
1681 cagttaccct gaattgtgat aggattgaga acaagggaaa gatgtttgac agtgatgtca
1741 tcataattac aactaatttg gtcaaccctg cacccctcga ttatgtaaac ttcgaggctt
1801 gctccagaag aatcgatttc ctcgtttatg cagagtcacc agaaatagaa aaggtcaaga
1861 gagacttccc tggtcagcct gacatgtgga aagaccactt caaaccggac ttctcccaca
1921 taaaactgac tttagccccc cagggcgggt ttgataagaa tggtaacacc ccacatggta
1981 agggcaccat gcggtccctg acccaggggt ccctgactgc aagagttgca ggacttgttc
2041 atgagaggag agatgagttc cagctgcaag gggacaacct acaaacatac aactttgaca
2101 ccaacagggt ctctgcgttt aggaaactgg ccgcagataa taagtatgga atcatggaga
2161 caatgagagt aggtgcggca ctcaagaatg tcaagacttt ggaagacctc aaagttgcct
2221 tgagagatgt gaaattcaat gaatgtgaga tcatctacag gaactccaag taccgagtct
2281 catccaatgg caaaggcaca gtctctgttc acaaagtcga ggacctcact tctcaaaccg
2341 caaacgaggt gagctcagcc ctcctcaggc tcagacaagc gagggccaga tactacgtca
2401 gctgtttcca ggaccttgtc tacactctca tacaggttgc tggggcttca ttcgtcgtca
2461 acaggatctc taagaggttc tgctgggaaa ggtgggttaa accaaccgag acccaggagg
2521 cgagtgagcc cgaaaaggag actgcccagg gtgaatggga gattgaaccc aaggacacag
2581 aaccagaagg taagaagggc aaaaacaaga aaggaagggg caagaagcac acagccttct
2641 ccagtaaagg tctgagtgac gaagagtatg atgaattcaa aaggattaga gaagaaagaa
2701 acggaaagta ctccattgag gaatacctgc aagaccggga ccgctactac gaagaagtgg
2761 cagttgcccg ggcaacagag gaggacttct gtgaagagga agaggccaag ataaggcaaa
2821 gaatcttccg cccaacaaag aagcagagaa aagaggaaag gggggtgctt ggcctggtca
2881 ctggttcgga catcagaaag aggaggccag atgacttcca accaaagggc aatttatggg
2941 cagatgacac tagaagtgtg gactacaatg agagacttga cttcgaggcc cctccaagtg
3001 tgtggtcaag gatagtccca ctgggcaccg gttggggctt ctgggtctca tccaacctcc
3061 tgattacaac aacacatgtc ctgcctaagg gtattaagga actctttgga gtcgatgtca
3121 agcaaattca aatccacaaa tctggagaat tttgcaggtt cagattccca aggccaatca
3181 ggccagacgt ctcagggctc gtgttagaag aaggtgcacc agagggcact gtctgctcca
3241 tactcgtgaa gagaccaaca ggtgagatga tccctctggc ggtgaggatg ggcacgcatg
3301 catctatgaa aattcagggt aggactgttg gcggccaaat gggaatgctt ctcacaggag
3361 cgaacgcaaa gaacatggac cttggcaccg gcccaggcga ttgcggttgt ccatacatct
3421 acaaacgcgg taatgatata attgtggcag gtgttcacac cgcagcagcc cgaggaggca
3481 acactgtcat ctgtgccacc caagggcagg atggagaagc agtccttgag ggaaatgaga
3541 atcttggtac gtactgcggt gccccaattt taggtcctgg caaggcgccc aagctaagca
3601 ctaagaccaa attttggcgt tcatcgccag atgccctgcc acccggcaca tatgaacctg
3661 cttacctagg aggcaaggac cccagagtgg agaaaggacc ttccctgcag caagtcatga
3721 gagaccaact gaaacccttc gcggaaccca ggggtaaacc accaagaccc gcagtcctag
3781 aagaggctaa aaagacagtg atgaacgtcc tggaacaaac cattgaccct gctaaaccat
3841 ggacctactc acaagcatgc gcctccttgg ataagaccac ttccagtggt agtccccacc
3901 acattaagaa aaatgaccat tggaatggag agtctttcac tggccccctt gcagaccaag
3961 cttctaaagc caatcttatg tatgagcagg ccaaacacat gcagcccgtg tacacggctg
4021 cacttaaaga tgagctcgtc aagactgaca aaatctataa aaagataaag aagaggctcc
4081 tttgggggtc agaccttggc acaatggtta gatgtgccag ggcctttggt ggtctcatgg
4141 acagcatgaa agcaagttgc atagccctcc cgtgcagggt gggaatgaac atgaatgagg
4201 acggacccat catctttgac aagcactcca aatacaggta ccattatgat gctgactatt
4261 ctaggtggga ttcaactcaa caaagaagca tcttgtctgc cgctatggaa gtgatggtgc
4321 ggttctctgc agaaccagaa ttggcacaag tggttgcaga ggaccttctg gcacctagcc
4381 aactagatgt tggcgacttt gtcatctctg ttcaggaagg cttaccgtca ggggtcccat
4441 gcacgtcaca atggaattca atagcacact ggattttaac tttgagtgca atggcagaag
4501 tgtcaggcct ctcgccagac gttgtccaag cccactcctg tttctccttc tatggtgatg
4561 atgagattgt gagcactgac atcaaccttg acccttcaaa attgacacag aaactcaggg
4621 agtatggttt ggtccccacc cggcctgaca aaactgaagg tcccctcgtc ataactgaag
4681 acctcaccgg cctaacgttc ctgcgcaggt caattgcacg ggaccctgct gggtggtttg
4741 gaaagctgga tcaagactca attctcagac agttgtactg gacaagaggg cccaatcatg
4801 aaaacccata tgaaagtatg gtcccccact ctcagcgggc cacacagctc atggccctcc
4861 ttggtgaagc ttcattgcac gggccccagt tttacaagaa ggtcagcaag atggttatca
4921 gtgagatcaa gagtggtggt ctggagtttt atgtgcccag acaagaggcc atgttcaggt
4981 ggatgagatt ctctgacctc agcacatggg agggcgatcg caatcttgct cccgagggtg
5041 tgaatgaaga tggcgtcgaa tgacgctgct ccatcgaatg atggtgctgc caacctcgta
5101 ccagaggcca acaatgaggt tatggcactt gaaccggtgg tgggagcttc aatcgcagct
5161 cctgttgtcg gtcagcaaaa tataattgac ccctggatta gagaaaattt tgtccaagca
5221 ccacagggcg agttcactgt ttcaccaagg aactcgcctg gtgagatgct cttaaacctt
5281 gagttgggcc cagagcttaa cccctatcta agtcatttgt cccgcatgta taacgggtat
5341 gctggtggca tgcaggttca ggtggtcctg gctgggaatg cgttcacagc tgggaaaatc
5401 atctttgccg ccgtaccacc acatttcccc gtagaaaata tcagtgcagc ccagataact
5461 atgtgccccc atgtaattgt tgatgtgaga caacttgaac cagtgcttct gcccctccct
5521 gacataagga acagattctt ccattacaat caggagaaca ccccccggat gagacttgta
5581 gctatgcttt acacacctct gagagccaac tctggtgagg atgtgtttac tgtatcttgc
5641 agggttttga ctcgtcctgc tccagatttt gagttcactt tcttggtgcc accaactgtt
5701 gaatcaaaga ctaagccttt tacactgcct atattaactc ttggtgaatt gtccaattct
5761 aggttcccag ccccaataga tatgttatac actgacccaa atgaggggat tgtagtccaa
5821 ccacaaaatg gtaggtgcac tcttgatggc actctgcagg gtaccacaca attagtcccc
5881 acccagatat gtgctttcag gggcacgcta attggccaaa cctcaagatc ttcagactca
5941 actgattcag ctccccgaag aagggatcac ccactccacg tgcaattaaa gaatcttgat
6001 ggcacgcagt atgacccaac tgatgaggtg ccagcggtcc ttggtgccat tgatttcaag
6061 ggggccgtct ttggagtagc cagccagagg gatgtttcag ggactcaagt gggggcaact
6121 cgtgctcatg aagtgcacat caacacaaca gatcccaggt atacaccaaa actgggatcc
6181 attctcatgc actcggagtc ggacgacttt gtgactgggc agccaatcca attcacaccc
6241 gtgggaatgg gtgataacga ctggcaccag tgggagttgc ccgattactc tggacaccta
6301 accctgaata tgaatcttgc cccagcagtc gcgcctgcct tcccaggtga gaggatcctt
6361 ttctttagat caatagtccc atctgccggc ggctatgggt ctggacaaat agattgtctc
6421 ataccacagg agtgggtcca gcatttctat caggaagctg caccatccca gtctgctgtg
6481 gctctcatca ggtatgtcaa ccctgacacg ggcagaaaca tctttgaggc aaaattgcac
6541 agggaaggct tcatcactgt ggcaaattct ggtaacaacc ccattgttgt cccccctaat
6601 gggtacttta ggtttgaagc ttgggtgaat caattttaca ctttgacccc catgggaact
6661 ggtcaggggc gcaggagaaa ccaataatgg ctagtgcttt tcttgcaggt cttgctggcg
6721 acgtcataac aaatggcgtt ggatctctta ttaatgctgg agctaatgca gttaatcaga
6781 aagttgaata tgattttaat aagcagcttc aaatggcatc atttaagcat gataaggaga
6841 tgttgcaatc acaagtgttg gcaaccaaac aattgcagca ggagatgatg aacataaggc
6901 aaggggtgtt gaccgctggc ggcttctccc ccgcggacgc tgctagaggg gccgtcaacg
6961 ctccattgac aaagattctg gactggaatg gcactagata ttgggcacca aatagtatga
7021 aaaccacaag ctactcagga cagttctcta gcagccctgt tcataagtcc cctgctcctt
7081 ctcagcacac tgctctatca aagggtaaat tgcaaagtga ttctgctagt gtatatagct
7141 ctccttctac tatttcttca caatcaaccc attcaacagc gctgtctcca ggaactgggt
7201 cttccaggtc cacctccacg tccacagcaa cctccacctt gtctaggacc agtgactggg
7261 ttaggggaca gaatgagagg ctcagcccgt ttatggatgg tgctctccaa accacctttg
7321 tcacaccacc atcgagcagg gcctcatcaa atggcacggt ctcgaccgtt cccaaagctg
7381 ttttggactc ctggactcct atgttcaaca cgcataggca gcctctcttc gcccacctgc
7441 gtaggcgagg ggagtcacaa atttagtgaa aagagtgatt aggttttctt ttcttttctc
7501 tttccttttc tctcttttaa a
//