Typing tool
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Typing tool
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Complete norovirus genomes
| KY392868 | GII.17 | |
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| GII.P17 |
ORF1: 1..5000
ORF2: 4981..6603
ORF3: 6603..7319
LOCUS KY392868 7319 bp RNA linear VRL 23-MAR-2017
DEFINITION Norovirus GII.17 isolate Hu/GII.17/LVCA_24785/2015/BRA RdRp gene,
partial cds; VP1 gene, complete cds; and VP2 gene, partial cds.
ACCESSION KY392868
VERSION KY392868.1
KEYWORDS .
SOURCE Norovirus GII.17
ORGANISM Norovirus GII.17
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7319)
AUTHORS Andrade,J.S., Fumian,T.M., Leite,J.P., Assis,M.R., Bello,G., Mir,D.
and Miagostovich,M.P.
TITLE Detection and molecular characterization of emergent GII.P17/GII.17
Norovirus in Brazil, 2015
JOURNAL Infect. Genet. Evol. 51, 28-32 (2017)
PUBMED 28300648
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 7319)
AUTHORS Andrade,J.S.R., Fumian,T.M., Leite,J.P.G., Assis,M.R., Bello,G.,
Mir,D. and Miagostovich,M.P.
TITLE Direct Submission
JOURNAL Submitted (22-DEC-2016) Laboratory of Comparative and Environmental
Virology, Oswaldo Cruz Foundation, Av. Brasil, 4365, Manguinhos,
Rio de Janeiro, RJ 21040-900, Brazil
COMMENT ##Assembly-Data-START##
Assembly Method :: Bioedit v. 7.2.5
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7319
/organism="Norovirus GII.17"
/mol_type="genomic RNA"
/isolate="Hu/GII.17/LVCA_24785/2015/BRA"
/host="Homo sapiens"
/db_xref="taxon:552592"
/country="Brazil"
/collection_date="2015"
/note="genotype: GII.17"
CDS <1..5000
/note="ORF-1"
/codon_start=3
/product="RdRp"
/protein_id="ARA91026.1"
/translation="KKALGARSKQPPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDE
PGIVYKVGEGVSGLPDLTTVVQPDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGE
IYHYGLYVERGHVLGVHKPPAAISLAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGE
TFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIK
KAANAVLCALSSLFTRPIKDIIGKLRPLNILNILATCDWTFAGIVESLILLAELFGVF
WTPPDVSAMIAPLLGDYEMQGPEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATT
LRACKDLGSYGLEILKLVMKWFFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLK
DKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTINALLARIAAARSLVHKAKEELSS
RQRPVVVMISGRPGIGKTHLARELAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVV
LWDDYGMSNPIQDALRLQELADTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLD
YVNFEACSRRIDFLVYADAPDIEKAKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFD
KNGNTPHGKGMVKSLTIGSLIARASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQL
AAENKYGLMDTLRVGNQLKSVKTLDELKQAIKNISIKKCQIVYNGCTYTMESDGRGKV
VVEKVQNTTVQTNNELVGALHHLRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRR
MNISNLWSKPPIEEGDEPEDRGGCPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHT
AFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEI
KIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERID
FEAPPSVWSRIVNFGTGWGFWVSPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFC
RLRFPKPIRPDVSGMILEEGAPEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTV
GGQMGMLLTGSNAKSMDLGTTPGDCGCPYMYKRGNDLVVIGVHTAAARGGNTVICATQ
GSEGEATLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGR
DPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYA
QACASLDKTTSSGYPHHVRKNDYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAAL
KDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNE
DGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLS
PSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYS
FYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTR
DPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFY
SKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 4981..6603
/note="ORF-2"
/codon_start=1
/product="VP1"
/protein_id="ARA91027.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNALQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 6603..>7319
/note="ORF-3"
/codon_start=1
/product="VP2"
/protein_id="ARA91028.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPNASQSKPAKPRSLAPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSA"
ORIGIN
1 ttaagaaagc cctcggggcg cggtctaaac aaccgccccc gggagaaaca aaacaaatac
61 aaaaaccacc aaggccaccg acaccggaat tggtgaagag aatacctcca cccccaccca
121 atggcgagga tgaaccaggg atagtgtaca aggtgggaga gggtgtgtct gggttgcccg
181 acctaacaac tgtggtacaa cctgacgcac aaaacacagc ttatagtgtt cccccactta
241 gccagagaga agtcggcgaa gctaaagaac cgctgcctgg ctccattctg gaaatgtggg
301 atggtgagat ctaccactat gggctgtatg ttgagcgggg gcatgtgctc ggagtacaca
361 aaccacctgc tgcaataagc cttgccaaaa ttgaaataac accgctgtct ctctactgga
421 gagtggtcta cactccccag tatttgatag atccaggaac tcttaagaac ttgagtggag
481 agactttccc atacacggcc tttgacaaca actgttatgc cttctgttgt tgggtcctag
541 acctcaacga ctcctggctt agcaggagaa tgatccaaag aacaactgga ttcttcaaac
601 cttatcagga ttggaacaga aaacccttac caaccatgga cgaaccgaaa atcaagaagg
661 ccgcgaatgc tgtcctatgt gctctctcct cactcttcac tagacccatt aaggacatca
721 ttggaaagct tagaccactg aacattctta acatactggc aacctgcgat tggacttttg
781 caggcatagt ggaatccttg atccttcttg ctgaactctt tggggtgttc tggacacccc
841 cagatgtgtc tgcgatgatt gctcccttac tcggtgacta cgagatgcaa ggccccgaag
901 acctggccgt ggaacttgtg cccgtggtga tgggaggaat aggtttggtg ttaggattca
961 ccaaagaaaa gatcggcaag atgctttcat cagctgcgac cacacttagg gcctgcaagg
1021 atctaggatc ttatggattg gagatactca aattggtcat gaagtggttc ttccccaaga
1081 aggaggaggc taacgaacta gccatggtga gggccattga ggatgcagtc ctggatttgg
1141 aggcaataga aaacaatcac atgaccaccc ttctcaagga taaagacagc ctggccacat
1201 acatgaggac tcttgacttg gaagaagaga aagcaaggaa actgtcaacc aaatcggcgt
1261 cacctgacat cgtgggtaca ataaacgcat tattggctag gatagcagcc gccaggtcac
1321 tggtccacaa ggctaaggag gagctctcga gcagacagag acctgttgtt gtaatgatat
1381 caggtagacc aggtatagga aagacccatc tggccagaga gttagccaag aaagttgcgt
1441 caacactgtc aggcgaccaa aggattggac tggtacctag aaatggcgtc gaccattggg
1501 acgcctacaa gggagaaagg gtggttctgt gggatgatta tggtatgagc aaccctatac
1561 aggacgcact gaggctccaa gaattggctg acacctgtcc tctgacccta aattgtgata
1621 ggattgaaaa caaaggaaaa gtgttcgaca gcgatgccat aattataaca accaaccttg
1681 caaacccagc accactagac tatgtcaact ttgaggcctg ctctagacgc atagacttct
1741 tggtgtatgc agacgcacct gacattgaga aggctaagcg tgacttccct ggccaaccag
1801 atatgtggaa agaccatttc agaccagact tctcacacat taaacttcag ctggcaccac
1861 agggaggttt tgacaaaaat ggcaacaccc cacatggcaa aggtatggtg aagtccctga
1921 cgattggttc tctgatcgcc agggcctccg gcttgctcca cgagagaatg gatgaattcg
1981 agctccaagg ctctgacctg ccaaccttca attttgaccg caacaaagtc gccgccttca
2041 gacaattggc agctgaaaac aaatatggtc ttatggacac actgagggtc ggcaaccaac
2101 tgaaaagtgt taagaccctg gatgagctga agcaggccat aaagaacatc agtatcaaga
2161 agtgtcagat agtgtataat ggatgcacct ataccatgga atctgatggg aggggcaagg
2221 ttgtggttga aaaggtacaa aacacaacag ttcaaaccaa caatgaactt gtaggggcgc
2281 tccaccacct gagatctgca aggataagat actatgttaa atgtttccaa gaagccattt
2341 actctctact ccaaattgct ggtgcagcct tcgtcacctc acgcatcgtg aggcgcatga
2401 acatatcaaa cctctggtcg aagccaccca tcgaggaggg tgatgagcct gaagacagag
2461 gaggatgccc caagcccagg gatgaagatg acctcactat tgactctaga gacattaaag
2521 tggaagggaa gaagggcaag aacaagtctg gccggggcaa gaaacacaca gctttctctt
2581 ccaagggcct cagtgatgaa gagtacgatg agtacaagag aatcagagag gaaaggaatg
2641 gtaaatactc aatagaggaa tacctccaag atagggacag atactatgaa gagcttgcca
2701 ttgctaaggc cactgaggag gacttctgtg aggaggagga gatcaaaatc cgccagagaa
2761 tcttccgacc caccaggaag cagcggaaag aggaaagggc cacgcttggg cttgtcacag
2821 gatcggaaat cagaaagagg aatccagatg actttaaacc aaaaggaaaa ttatgggctg
2881 atgacaacag gagcgtggat tacaatgaga ggatagattt tgaggctccc ccgagtgttt
2941 ggtctaggat agtcaacttt ggcacaggct ggggattctg ggtttctcca agtctcttta
3001 taacttcaac acacgtcata ccaaaaggaa tcactgaggc ctttggagtg cccataaacc
3061 aaatccaaat tcacaaatct ggagaatttt gccgcttgcg gtttccaaag ccaattagac
3121 cagacgtgag tgggatgatc ttggaagagg gcgctcctga aggcactgtt gtgtctattc
3181 tcatcaaaag gacaacaggg gagctgatgc ctcttgcagt cagaatgggg actcatgcca
3241 caatgaaaat ccaaggtaga acggtgggtg gtcagatggg tatgcttctc actggctcaa
3301 atgctaaaag catggatcta ggcacaacgc caggtgactg cggatgtcca tacatgtaca
3361 aaaggggcaa tgaccttgtg gtcattgggg tgcacactgc agcagcccgt ggaggcaaca
3421 cggtcatatg tgccacacag ggaagtgaag gtgaagccac tcttgaagga ggtgacaaca
3481 agggtaccta ttgtggagcc cccattttgg gacctggcaa tgcaccaaaa ttgagcacaa
3541 agacaaaatt ctggagatcc tctaacgcac cgcttccccc aggtacttat gaaccagcat
3601 accttggtgg gagagacccg cgtgtgaagg gaggcccatc tctgcaacaa gttatgagag
3661 accaacttaa gccttttaca gagcccagag ggaagccacc aaacccaaac gtcttagagt
3721 cagcaaagaa gactatcatc aatgttctgg aacaaaccat tgacccccct caaaagtggt
3781 catatgccca agcttgtgca tccctcgaca agacaacctc cagtggatac ccgcaccacg
3841 tccggaagaa tgactattgg agtggtgaat ccttcacagg aaaacttgca gatcaggctt
3901 caaaagcaaa tctcatgtat gaggaaggca agcacatgca accagtttac accgcagcac
3961 tcaaagacga gctcgtgaaa actgacaaaa tttatggcaa aatcaagaaa agactcctgt
4021 ggggttctga cctctccaca atgattcgat gcgccagagc atttggtggt ctcatggatg
4081 aattcaaagc aaattgtatt acactcccta tcagagttgg tatgaatatg aatgaagatg
4141 gtcccataat atttgagaaa cactccaggt acaggtacca ctatgatgct gattactccc
4201 gctgggactc cacacaacag cgggcagtgc tggaagcggc acttgaaatc atggtgagat
4261 tttctgctga gccacagctg gcacaaatag tggcagagga cctgctgtca ccaagtgtgg
4321 ttgatgtggg cgatttcaaa atcgctatca atgaaggcct accatctggc gtgccttgca
4381 cctcacaatg gaattctatt gcccactggt tacttacctt gtgtgccctt tctgaagtga
4441 caggattagg tcctgacatc atacaagcta actccatgta ctctttctat ggtgatgatg
4501 agattgtgag cacagacata aaattggacc cagagaaatt gaccgcaaag ctcaaagaat
4561 atggccttaa acctactcgg cccgacaaaa ctgaggggcc gttggtgatt agtgaggacc
4621 tgaatgggtt gactttcctc cgccgaacag tcacccgtga tccagcaggt tggtttggaa
4681 agttggacca aaactccatc ctcaggcagt tgtactggac aagaggaccc aaccatgaag
4741 accccagtga gaccatgata ccacacgcac aaagacctgt gcagctcatg gcactactag
4801 gagaatcctc tctacatgga ccctcatttt acagcaaggt tagcaaatta gtcatatctg
4861 aacttaaaga gggaggaatg gatttttatg tgcccagaca agagtcaatg ttcagatgga
4921 tgaggttctc agatctaagc acatgggagg gcgatcgcaa tctggctccc agttttgtga
4981 atgaagatgg cgtcgaatga cgccgctcca tctaatgatg gtgctgctgg tctcgtacca
5041 gagggcaaca acgagaccct tcccctagaa ccagttgcgg gcgcagctat agccgcaccc
5101 gtcactggcc aaaataacat aattgacccc tggattagaa caaattttgt gcaagcacca
5161 aacggagagt tcacagtgtc acccagaaac tctcctggag aaattttatt aaacttagag
5221 ttgggccctg atttgaaccc ttatttggct catttgtcaa ggatgtacaa tgggtatgct
5281 ggtggagtgg aagttcaggt tctcctggca gggaacgcgt tcactgccgg aaagatcctc
5341 ttcgccgccg tcccgccaaa tttcccagtg gaattcttaa gcccagccca gatcacaatg
5401 ctcccacatt taatagtaga tgttaggact cttgaaccaa ttatgatccc actccctgat
5461 gttaggaata cattcttcca ttatagtaac cagcctaaca gccgcatgag attagtggct
5521 atgctctata ccccactcag atctaatggc tcaggtgatg atgtctttac tgtttcttgc
5581 agggttttga ctaggcctac tcctgatttt gagttcactt atttagtgcc accttctgtt
5641 gaatctaaaa ctaagccttt ttccttacct attttaaccc tttctgagct cacaaattcg
5701 aggttcccag tccccatcga ttcgcttttc accgcccaga ataatgcgtt gcaggtgcag
5761 tgtcaaaatg gcaggtgtac acttgatggt gagttacaag gcacaaccca gttgctccca
5821 tctggcatct gtgcattcag aggacgggtg acagcacaaa ttaaccaacg tgacagatgg
5881 cacatgcaac tgcaaaacct taatggtaca acatatgacc caactgatga tgtgccagcc
5941 ccgctgggta cacctgactt caagggcgtc gtgtttggga tggtaagcca aagaaatgtg
6001 ggtaatgatg cgcctggctc aaccagagcc caacaggcgt gggtttcaac ctatagcccc
6061 caatttgtcc ccaaattagg ttctgtcaat cttagaatta gtgataatga tgatttccaa
6121 ttccagccga caaaattcac accagtgggc gtcaatgatg acgatgatgg ccacccgttc
6181 agacaatggg aactaccaaa ctattcagga gagcttacct tgaatatgaa tcttgccccc
6241 ccagttgctc caaattttcc tggtgaacaa ttgttattct tcagatcttt cgtgccatgc
6301 tcaggaggtt acaaccaagg tattatagat tgtcttattc cccaagaatg gattcaacac
6361 ttctatcagg aatcagcacc ctcccagtca gacgtggccc taatcaggta tgtcaacccc
6421 gatacgggac gtacactgtt tgaagcaaaa ttgcacagat ctggttacat tactgtggct
6481 cactctggag actatcctct tgttgttccg gctaatggac actttagatt tgattcttgg
6541 gtaaatcagt tttactcact cgccccaatg ggaactggga atgggcgaag gagggctcag
6601 taatggctgg ggctttcatt gcaggattgg caggcgacat gctcacgtca tctgtgggct
6661 cccttgtgaa cgcaggggca aacgccatca accaaaagat agactttgaa aacaacaaac
6721 aactccagtc tgcttccttt cagcatgata aagagatgct ccaagcgcag gtgagggcaa
6781 ccaagcagct gcaatctgaa atgatagccc taaaacaggg ggttttggcc gcaggcggct
6841 tttcccccac tgatgcagca aggggatcca ttggtgcacc catgacaaag gtgcttgact
6901 ggtctggcac tcgatactgg gcgcccaatt ccacaaagac aactggctat tcgggacaat
6961 tcacctcttc acctgtgcat atgcctagcc caaatgcttc acaatcaaaa cctgcaaagc
7021 ctagatctct agctccttcc tcttcttcta gcagtgtcta tagtatgtat actcagtcta
7081 ctcatttaac atctggctct tctagtaatg cttcttctgc ctctacaaaa ttgacaaatt
7141 taagctctgg ctcctctcaa aacagaacag cagagtgggt gaatcaacag agaagtctta
7201 gccctttcat gagtggcgca cttaacatct cacatgtcac gccaccctca agtagggctt
7261 ccagttctgg gacggtctcg accgtgccca aggaagtttt ggactcctgg acgtctgcg
//