Typing tool
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Typing tool
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Complete norovirus genomes
| KY392867 | GII.17 | |
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| GII.P17 |
ORF1: 1..5053
ORF2: 5034..6656
ORF3: 6656..7397
LOCUS KY392867 7397 bp RNA linear VRL 23-MAR-2017
DEFINITION Norovirus GII.17 isolate Hu/GII.17/LVCA_24606/2015/BRA RdRp gene,
partial cds; VP1 gene, complete cds; and VP2 gene, partial cds.
ACCESSION KY392867
VERSION KY392867.1
KEYWORDS .
SOURCE Norovirus GII.17
ORGANISM Norovirus GII.17
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7397)
AUTHORS Andrade,J.S., Fumian,T.M., Leite,J.P., Assis,M.R., Bello,G., Mir,D.
and Miagostovich,M.P.
TITLE Detection and molecular characterization of emergent GII.P17/GII.17
Norovirus in Brazil, 2015
JOURNAL Infect. Genet. Evol. 51, 28-32 (2017)
PUBMED 28300648
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 7397)
AUTHORS Andrade,J.S.R., Fumian,T.M., Leite,J.P.G., Assis,M.R., Bello,G.,
Mir,D. and Miagostovich,M.P.
TITLE Direct Submission
JOURNAL Submitted (22-DEC-2016) Laboratory of Comparative and Environmental
Virology, Oswaldo Cruz Foundation, Av. Brasil, 4365, Manguinhos,
Rio de Janeiro, RJ 21040-900, Brazil
COMMENT ##Assembly-Data-START##
Assembly Method :: Bioedit v. 7.2.5
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7397
/organism="Norovirus GII.17"
/mol_type="genomic RNA"
/isolate="Hu/GII.17/LVCA_24606/2015/BRA"
/host="Homo sapiens"
/db_xref="taxon:552592"
/geo_loc_name="Brazil"
/collection_date="2015"
/note="genotype: GII.17"
CDS <1..5053
/note="ORF-1"
/codon_start=2
/product="RdRp"
/protein_id="ARA91023.1"
/translation="DKEKSSSDSLFANMSVTFKKALGARSKQPPPGETKQIQKPPRPP
TPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPDAQNTAYSVPPLSQREV
GEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIEITPLSLYWRVV
YTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGFFKP
YQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRPLNILNILATCDWT
FAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAVELVPVVMGGIGLV
LGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEANELAMVRAIED
AVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTINALLA
RIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVASTLSGDQRIGL
VPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCDRIENKGKVF
DSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPGQPDMWKDHF
RPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGLLHERMDEFELQGS
DLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQAIKNISIKKCQ
IVYNGCTYTMESDGRGKVVVEKVQNTTVQTNNELVGALHHLRSARIRYYVKCFQEAIY
SLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPKPRDEDDLTIDSRDI
KVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYE
ELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPK
GKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITSTHVIPKGITE
AFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSILIKRTTGELMP
LAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYMYKRGNDLVVI
GVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRS
SNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPNVLESAKKT
IINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGKLADQASKA
NLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDE
FKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLEAALEIMV
RFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWLLTLCAL
SEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPL
VISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQRP
VQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEG
DRNLAPSFVNEDGVE"
CDS 5034..6656
/note="ORF-2"
/codon_start=1
/product="VP1"
/protein_id="ARA91024.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNALQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPADGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 6656..>7397
/note="ORF-3"
/codon_start=1
/product="VP2"
/protein_id="ARA91025.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPNASQSKPAKPRSLAPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPL"
ORIGIN
1 cgacaaggaa aaatcttcaa gtgacagctt gtttgctaac atgtctgtta cttttaagaa
61 agccctcggg gcgcggtcta aacaaccgcc cccgggagaa acaaaacaaa tacaaaaacc
121 accaaggcca ccgacaccgg aattggtgaa gagaatacct ccacccccac ccaatggcga
181 ggatgaacca gggatagtgt acaaggtggg agagggtgtg tctgggctgc ccgacctaac
241 aactgtggta caacctgacg cacaaaacac agcttatagt gttcccccac ttagccagag
301 agaagtcggc gaagctaaag aaccgctgcc tggctccatt ctggaaatgt gggatggtga
361 gatctaccac tatgggctgt atgttgagcg ggggcatgtg ctcggagtac acaaaccacc
421 tgctgcaata agccttgcca aaattgaaat aacaccgctg tctctctact ggagagtggt
481 ctacactccc cagtatttga tagatccagg aactcttaag aacttgagtg gagagacttt
541 cccatacacg gcctttgaca acaactgtta tgccttctgt tgttgggtcc tagacctcaa
601 cgactcctgg cttagcagga gaatgatcca aagaacaact ggattcttca aaccttatca
661 ggattggaac agaaaaccct taccaaccat ggatgaaccg aaaatcaaga aggccgcgaa
721 tgctgtccta tgtgctctct cctcactctt cactagaccc attaaggaca tcattggaaa
781 gcttagacca ctgaacattc ttaacatact ggcaacctgc gattggactt ttgcaggcat
841 agtggaatcc ttgatccttc ttgctgaact ctttggggtg ttctggacac ccccagatgt
901 gtctgcgatg attgctccct tactcggtga ctacgagatg caaggccccg aagacctggc
961 cgtggaactt gtgcccgtgg tgatgggagg aataggtttg gtgttaggat tcaccaaaga
1021 aaagatcggc aagatgcttt catcagctgc gaccacactt agggcctgca aggatctagg
1081 atcttatgga ttggagatac tcaaattggt catgaagtgg ttcttcccca agaaggagga
1141 ggctaacgaa ctagccatgg tgagggccat tgaggatgca gtcctggatt tggaggcaat
1201 agaaaacaat cacatgacca cccttctcaa ggataaagac agcctggcca catacatgag
1261 gactcttgac ttggaagaag agaaagcaag gaaactgtca accaaatcgg cgtcacctga
1321 catcgtgggt acaataaacg cattattggc taggatagca gccgccaggt cactggtcca
1381 caaggctaag gaggagctct cgagcagaca gagacctgtt gttgtaatga tatcaggtag
1441 accaggtata ggaaagaccc atctggccag agagctagcc aagaaagttg cgtcaacact
1501 gtcaggcgac caaaggattg ggctggtacc tagaaatggc gtcgaccatt gggacgccta
1561 caagggagaa agggtggttc tgtgggatga ttatggtatg agcaacccta tacaggacgc
1621 actgaggctc caagaattgg ctgacacctg tcctctgacc ctaaattgtg ataggattga
1681 aaacaaagga aaagtgttcg acagtgatgc cataattata acaaccaacc ttgcaaaccc
1741 agcaccacta gactatgtca actttgaggc ctgctctaga cgcatagact tcttggtgta
1801 tgcagacgca cctgacattg agaaggctaa gcgtgacttc cctggccaac cagatatgtg
1861 gaaagaccat ttcagaccag acttctcaca cattaaactt cagctggcac cacagggagg
1921 ttttgacaaa aatggcaaca ccccacatgg caaaggtgtg gtgaagtccc tgacgattgg
1981 ttctctgatc gccagggcct ccggcttgct ccacgagaga atggatgaat tcgagctcca
2041 aggctctgac ctgccaacct tcaactttga ccgcaacaaa gtcgccgcct tcagacaatt
2101 ggcagctgaa aacaaatatg gtcttatgga cacactgagg gtcggcaacc aactgaaaag
2161 tgttaagacc ctggatgagc tgaagcaggc cataaagaac atcagtatca agaagtgtca
2221 gatagtgtat aatggatgca cctataccat ggaatctgat gggaggggca aggttgtggt
2281 tgaaaaggta caaaacacaa cagttcaaac caacaatgaa cttgtagggg cgctccacca
2341 cctgagatct gcaaggataa gatactatgt taaatgtttc caagaagcca tttactctct
2401 actccaaatt gctggtgcag ccttcgtcac ctcacgcatc gtgaggcgca tgaacatatc
2461 aaacctctgg tcgaagccac ccatcgagga gggtgatgag cctgaagaca gaggaggatg
2521 ccccaagccc agggatgaag atgacctcac tattgactct agagacatta aagtggaagg
2581 gaagaagggc aagaacaagt ctggccgggg caagaaacac acagccttct cttccaaggg
2641 cctcagtgat gaagagtacg atgagtacaa gagaatcaga gaggaaagga atggcaaata
2701 ctcaatagag gaatacctcc aagataggga cagatactat gaagagcttg ccattgctaa
2761 ggccactgag gaggacttct gtgaggagga ggagatcaaa atccgccaga gaatcttccg
2821 acccaccagg aagcagcgga aagaggaaag ggccacgctt gggcttgtca caggatcgga
2881 aatcagaaag aggaatccag atgactttaa accaaaagga aaattgtggg ctgatgacaa
2941 caggagcgtg gattacaatg agaggataga ttttgaggct cccccgagtg tttggtctag
3001 gatagtcaac tttggcacag gctggggatt ctgggtttct ccaagtctct ttataacttc
3061 aacacacgtc ataccaaaag gaatcactga ggcctttgga gtgcccataa accaaatcca
3121 aattcacaaa tctggagaat tttgccgctt gcggtttcca aagccaatta gaccagacgt
3181 gagtgggatg atcttggaag agggcgcccc tgaaggcact gttgtgtcta ttctcatcaa
3241 aaggacaaca ggggagctga tgcctcttgc agtcagaatg gggactcatg ccacaatgaa
3301 aatccaaggt agaacggtgg gtggtcagat gggtatgctt ctcactggct caaatgctaa
3361 aagcatggat ctaggcacaa cgccaggtga ctgcggatgt ccatacatgt acaaaagggg
3421 caatgacctt gtggtcattg gggtgcacac tgcagcagct cgtggaggca acacggtcat
3481 atgtgccaca cagggaagtg aaggtgaagc cactcttgaa ggaggtgaca acaagggtac
3541 ctattgtgga gcccccattt tgggacctgg caatgcacca aaattgagca caaagacaaa
3601 attctggaga tcctctaacg caccgcttcc cccaggtact tatgaaccag cataccttgg
3661 tgggagagac ccgcgtgtga agggaggccc atctctgcaa caagttatga gagaccaact
3721 taagcctttt acagagccca gagggaagcc accaaaccca aatgtcttag agtcagcaaa
3781 gaagactatc atcaatgttc tggaacaaac cattgacccc cctcaaaagt ggtcatatgc
3841 ccaagcttgt gcatccctcg acaagacaac ctccagtgga tacccgcacc acgtccggaa
3901 gaatgactat tggagtggtg aatccttcac aggaaaactt gcagatcagg cttcaaaagc
3961 aaatctcatg tatgaggaag gcaagcacat gcaaccagtt tacaccgcag cactcaaaga
4021 cgagctcgtg aaaactgaca aaatttatgg caaaatcaag aaaagactcc tgtggggttc
4081 tgacctctct acaatgattc gatgcgccag agcatttggt ggtctcatgg atgaattcaa
4141 agcaaattgt attacactcc ctatcagagt tggtatgaat atgaatgaag atggtcccat
4201 aatatttgag aaacactcca ggtacaggta ccactatgat gctgattact cccgctggga
4261 ctccacacaa cagcgggcag tgctggaagc ggcacttgaa atcatggtga gattttctgc
4321 tgagccacag ctggcacaaa tagtggcaga ggacctgctg tcaccaagtg tggttgatgt
4381 gggcgatttc aaaatcgcta tcaatgaagg cctaccatct ggcgtgcctt gcacctcaca
4441 atggaattct attgcccact ggttacttac cttgtgtgcc ctttctgaag tgacaggatt
4501 aggtcctgac atcatacaag ctaactccat gtactctttc tatggtgatg atgagattgt
4561 gagcacagac ataaaattgg acccagagaa attgaccgca aagctcaaag aatatggcct
4621 taaacctact cggcccgaca aaactgaggg gccgttggtg attagtgagg acctgaatgg
4681 gttaactttc ctccgccgaa cagtcacccg tgatccagca ggttggtttg gaaagttgga
4741 ccaaaactcc atcctcaggc agttgtactg gacaagagga cccaaccatg aagaccccag
4801 tgagaccatg ataccacacg cacaaagacc tgtgcagctc atggcactac taggagaatc
4861 ctccctacat ggaccctcat tttacagcaa ggttagcaaa ttagtcatat ctgaacttaa
4921 agagggagga atggattttt atgtgcccag acaagagtca atgttcagat ggatgaggtt
4981 ctcagatcta agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga
5041 tggcgtcgaa tgacgccgct ccatctaatg atggtgctgc tggtctcgta ccagagggca
5101 acaacgagac ccttccccta gaaccagttg cgggcgcagc tatagccgca cccgtcactg
5161 gccaaaataa cataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatggag
5221 agttcacagt gtcacccaga aactctcctg gagaaatttt attaaactta gagttgggcc
5281 ctgatttgaa cccttatttg gctcatttgt caaggatgta caatgggtat gctggtggag
5341 tggaagttca ggttctcctg gcagggaacg cgttcactgc cggaaagatc ctcttcgccg
5401 ccgtcccgcc aaatttccca gtggaattct taagtccagc ccagatcaca atgctcccac
5461 atttaatagt agatgttagg actcttgaac caattatgat cccactccct gatgttagga
5521 atacattctt ccattatagt aaccagccta acagccgcat gagattagtg gctatgctct
5581 ataccccact cagatctaat ggctcaggtg atgatgtctt tactgtctct tgcagggttt
5641 tgactaggcc tactcctgat tttgagttca cttatttagt gccaccttct gttgaatcta
5701 aaactaagcc tttttcctta cctattttaa ccctttctga gctcacaaat tcgaggttcc
5761 cagtccccat cgattcgctt ttcaccgccc agaataatgc gttgcaggtg cagtgtcaaa
5821 atggcaggtg tacacttgat ggtgagttac aaggcacaac ccagttgctc ccatctggca
5881 tctgtgcatt cagaggacgg gtgacagcac aaattaacca acgtgacagg tggcacatgc
5941 aactgcaaaa ccttaatggt acaacatatg acccaactga tgatgtgcca gccccgttgg
6001 gtacacctga cttcaagggc gtcgtgtttg ggatggtaag ccaaagaaat gtgggtaatg
6061 atgcgcctgg ctcaaccaga gcccaacagg cgtgggtttc aacctatagc ccccaatttg
6121 tccccaaatt aggttctgtc aatcttagaa ttagtgataa tgatgatttc caattccagc
6181 cgacaaaatt cacaccagtg ggcgtcaatg atgacgatga tggccacccg ttcagacaat
6241 gggaactacc aaactattca ggggagctta ccttgaatat gaatcttgcc cccccagttg
6301 ctccaaattt tcctggtgaa caattgttat tcttcagatc tttcgtgcca tgctcaggag
6361 gttacaacca aggtattata gattgtctta ttccccaaga atggattcaa cacttctatc
6421 aggaatcagc accctcccag tcagacgtgg ccctaatcag gtatgtcaac cccgatacgg
6481 gacgtacact gtttgaagca aaattgcaca gatctggtta cattactgtg gctcactctg
6541 gagactatcc tcttgttgtt ccggctgatg gacactttag atttgattct tgggtaaatc
6601 agttttactc actcgcccca atgggaactg ggaatgggcg aaggagggct cagtaatggc
6661 tggggctttc attgcaggat tggcaggcga catgctcacg tcatctgtgg gctcccttgt
6721 gaacgcaggg gcaaacgcca tcaaccaaaa gatagacttt gaaaacaaca aacaactcca
6781 gtctgcttcc tttcagcatg ataaagagat gctccaagcg caggtgaggg caaccaagca
6841 gctgcaatct gaaatgatag ccctaaaaca gggggttttg gccgcaggcg gcttttcccc
6901 cactgatgca gcaaggggat ccattggcgc acccatgaca aaggtgcttg actggtctgg
6961 cactcgatac tgggcgccca attccacaaa gacaactggc tattcgggac aattcacctc
7021 ttcacctgtg catatgccta gcccaaatgc ttcacaatca aaacctgcaa agcctaggtc
7081 tctagctcct tcctcttctt ctagcagtgt ctatagtatg tatactcaat ctactcattt
7141 aacatctggc tcttctagta atgcttcttc tgcctctaca aaattgacaa atttaagctc
7201 tggctcctct caaaacagaa cagcagagtg ggtaaatcaa cagagaagtc ttagcccttt
7261 catgagtggc gcacttaaca tctcacatgt cacgccaccc tcaagtaggg cttccagttc
7321 tgggacggtc tcgaccgtgc ccaaggaagt tttggactcc tggacgtctg cgtttaacac
7381 acacagacag ccgctct
//