Typing tool
|
Complete norovirus genomes
KY392867 | GII.17 | ||
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GII.P17 |
ORF1: 1..5053 ORF2: 5034..6656 ORF3: 6656..7397LOCUS KY392867 7397 bp RNA linear VRL 23-MAR-2017 DEFINITION Norovirus GII.17 isolate Hu/GII.17/LVCA_24606/2015/BRA RdRp gene, partial cds; VP1 gene, complete cds; and VP2 gene, partial cds. ACCESSION KY392867 VERSION KY392867.1 KEYWORDS . SOURCE Norovirus GII.17 ORGANISM Norovirus GII.17 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7397) AUTHORS Andrade,J.S., Fumian,T.M., Leite,J.P., Assis,M.R., Bello,G., Mir,D. and Miagostovich,M.P. TITLE Detection and molecular characterization of emergent GII.P17/GII.17 Norovirus in Brazil, 2015 JOURNAL Infect. Genet. Evol. 51, 28-32 (2017) PUBMED 28300648 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 7397) AUTHORS Andrade,J.S.R., Fumian,T.M., Leite,J.P.G., Assis,M.R., Bello,G., Mir,D. and Miagostovich,M.P. TITLE Direct Submission JOURNAL Submitted (22-DEC-2016) Laboratory of Comparative and Environmental Virology, Oswaldo Cruz Foundation, Av. Brasil, 4365, Manguinhos, Rio de Janeiro, RJ 21040-900, Brazil COMMENT ##Assembly-Data-START## Assembly Method :: Bioedit v. 7.2.5 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7397 /organism="Norovirus GII.17" /mol_type="genomic RNA" /isolate="Hu/GII.17/LVCA_24606/2015/BRA" /host="Homo sapiens" /db_xref="taxon:552592" /country="Brazil" /collection_date="2015" /note="genotype: GII.17" CDS <1..5053 /note="ORF-1" /codon_start=2 /product="RdRp" /protein_id="ARA91023.1" /translation="DKEKSSSDSLFANMSVTFKKALGARSKQPPPGETKQIQKPPRPP TPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPDAQNTAYSVPPLSQREV GEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIEITPLSLYWRVV YTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGFFKP YQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRPLNILNILATCDWT FAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAVELVPVVMGGIGLV LGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEANELAMVRAIED AVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTINALLA RIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVASTLSGDQRIGL VPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCDRIENKGKVF DSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPGQPDMWKDHF RPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGLLHERMDEFELQGS DLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQAIKNISIKKCQ IVYNGCTYTMESDGRGKVVVEKVQNTTVQTNNELVGALHHLRSARIRYYVKCFQEAIY SLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPKPRDEDDLTIDSRDI KVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYE ELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPK GKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITSTHVIPKGITE AFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSILIKRTTGELMP LAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYMYKRGNDLVVI GVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRS SNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPNVLESAKKT IINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGKLADQASKA NLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDE FKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLEAALEIMV RFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWLLTLCAL SEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPL VISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQRP VQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEG DRNLAPSFVNEDGVE" CDS 5034..6656 /note="ORF-2" /codon_start=1 /product="VP1" /protein_id="ARA91024.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNALQVQCQNGRCTLDGELQGTT QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPADGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" CDS 6656..>7397 /note="ORF-3" /codon_start=1 /product="VP2" /protein_id="ARA91025.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMPSPNASQSKPAKPRSLAPSSSSSSVYSMYTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPL" ORIGIN 1 cgacaaggaa aaatcttcaa gtgacagctt gtttgctaac atgtctgtta cttttaagaa 61 agccctcggg gcgcggtcta aacaaccgcc cccgggagaa acaaaacaaa tacaaaaacc 121 accaaggcca ccgacaccgg aattggtgaa gagaatacct ccacccccac ccaatggcga 181 ggatgaacca gggatagtgt acaaggtggg agagggtgtg tctgggctgc ccgacctaac 241 aactgtggta caacctgacg cacaaaacac agcttatagt gttcccccac ttagccagag 301 agaagtcggc gaagctaaag aaccgctgcc tggctccatt ctggaaatgt gggatggtga 361 gatctaccac tatgggctgt atgttgagcg ggggcatgtg ctcggagtac acaaaccacc 421 tgctgcaata agccttgcca aaattgaaat aacaccgctg tctctctact ggagagtggt 481 ctacactccc cagtatttga tagatccagg aactcttaag aacttgagtg gagagacttt 541 cccatacacg gcctttgaca acaactgtta tgccttctgt tgttgggtcc tagacctcaa 601 cgactcctgg cttagcagga gaatgatcca aagaacaact ggattcttca aaccttatca 661 ggattggaac agaaaaccct taccaaccat ggatgaaccg aaaatcaaga aggccgcgaa 721 tgctgtccta tgtgctctct cctcactctt cactagaccc attaaggaca tcattggaaa 781 gcttagacca ctgaacattc ttaacatact ggcaacctgc gattggactt ttgcaggcat 841 agtggaatcc ttgatccttc ttgctgaact ctttggggtg ttctggacac ccccagatgt 901 gtctgcgatg attgctccct tactcggtga ctacgagatg caaggccccg aagacctggc 961 cgtggaactt gtgcccgtgg tgatgggagg aataggtttg gtgttaggat tcaccaaaga 1021 aaagatcggc aagatgcttt catcagctgc gaccacactt agggcctgca aggatctagg 1081 atcttatgga ttggagatac tcaaattggt catgaagtgg ttcttcccca agaaggagga 1141 ggctaacgaa ctagccatgg tgagggccat tgaggatgca gtcctggatt tggaggcaat 1201 agaaaacaat cacatgacca cccttctcaa ggataaagac agcctggcca catacatgag 1261 gactcttgac ttggaagaag agaaagcaag gaaactgtca accaaatcgg cgtcacctga 1321 catcgtgggt acaataaacg cattattggc taggatagca gccgccaggt cactggtcca 1381 caaggctaag gaggagctct cgagcagaca gagacctgtt gttgtaatga tatcaggtag 1441 accaggtata ggaaagaccc atctggccag agagctagcc aagaaagttg cgtcaacact 1501 gtcaggcgac caaaggattg ggctggtacc tagaaatggc gtcgaccatt gggacgccta 1561 caagggagaa agggtggttc tgtgggatga ttatggtatg agcaacccta tacaggacgc 1621 actgaggctc caagaattgg ctgacacctg tcctctgacc ctaaattgtg ataggattga 1681 aaacaaagga aaagtgttcg acagtgatgc cataattata acaaccaacc ttgcaaaccc 1741 agcaccacta gactatgtca actttgaggc ctgctctaga cgcatagact tcttggtgta 1801 tgcagacgca cctgacattg agaaggctaa gcgtgacttc cctggccaac cagatatgtg 1861 gaaagaccat ttcagaccag acttctcaca cattaaactt cagctggcac cacagggagg 1921 ttttgacaaa aatggcaaca ccccacatgg caaaggtgtg gtgaagtccc tgacgattgg 1981 ttctctgatc gccagggcct ccggcttgct ccacgagaga atggatgaat tcgagctcca 2041 aggctctgac ctgccaacct tcaactttga ccgcaacaaa gtcgccgcct tcagacaatt 2101 ggcagctgaa aacaaatatg gtcttatgga cacactgagg gtcggcaacc aactgaaaag 2161 tgttaagacc ctggatgagc tgaagcaggc cataaagaac atcagtatca agaagtgtca 2221 gatagtgtat aatggatgca cctataccat ggaatctgat gggaggggca aggttgtggt 2281 tgaaaaggta caaaacacaa cagttcaaac caacaatgaa cttgtagggg cgctccacca 2341 cctgagatct gcaaggataa gatactatgt taaatgtttc caagaagcca tttactctct 2401 actccaaatt gctggtgcag ccttcgtcac ctcacgcatc gtgaggcgca tgaacatatc 2461 aaacctctgg tcgaagccac ccatcgagga gggtgatgag cctgaagaca gaggaggatg 2521 ccccaagccc agggatgaag atgacctcac tattgactct agagacatta aagtggaagg 2581 gaagaagggc aagaacaagt ctggccgggg caagaaacac acagccttct cttccaaggg 2641 cctcagtgat gaagagtacg atgagtacaa gagaatcaga gaggaaagga atggcaaata 2701 ctcaatagag gaatacctcc aagataggga cagatactat gaagagcttg ccattgctaa 2761 ggccactgag gaggacttct gtgaggagga ggagatcaaa atccgccaga gaatcttccg 2821 acccaccagg aagcagcgga aagaggaaag ggccacgctt gggcttgtca caggatcgga 2881 aatcagaaag aggaatccag atgactttaa accaaaagga aaattgtggg ctgatgacaa 2941 caggagcgtg gattacaatg agaggataga ttttgaggct cccccgagtg tttggtctag 3001 gatagtcaac tttggcacag gctggggatt ctgggtttct ccaagtctct ttataacttc 3061 aacacacgtc ataccaaaag gaatcactga ggcctttgga gtgcccataa accaaatcca 3121 aattcacaaa tctggagaat tttgccgctt gcggtttcca aagccaatta gaccagacgt 3181 gagtgggatg atcttggaag agggcgcccc tgaaggcact gttgtgtcta ttctcatcaa 3241 aaggacaaca ggggagctga tgcctcttgc agtcagaatg gggactcatg ccacaatgaa 3301 aatccaaggt agaacggtgg gtggtcagat gggtatgctt ctcactggct caaatgctaa 3361 aagcatggat ctaggcacaa cgccaggtga ctgcggatgt ccatacatgt acaaaagggg 3421 caatgacctt gtggtcattg gggtgcacac tgcagcagct cgtggaggca acacggtcat 3481 atgtgccaca cagggaagtg aaggtgaagc cactcttgaa ggaggtgaca acaagggtac 3541 ctattgtgga gcccccattt tgggacctgg caatgcacca aaattgagca caaagacaaa 3601 attctggaga tcctctaacg caccgcttcc cccaggtact tatgaaccag cataccttgg 3661 tgggagagac ccgcgtgtga agggaggccc atctctgcaa caagttatga gagaccaact 3721 taagcctttt acagagccca gagggaagcc accaaaccca aatgtcttag agtcagcaaa 3781 gaagactatc atcaatgttc tggaacaaac cattgacccc cctcaaaagt ggtcatatgc 3841 ccaagcttgt gcatccctcg acaagacaac ctccagtgga tacccgcacc acgtccggaa 3901 gaatgactat tggagtggtg aatccttcac aggaaaactt gcagatcagg cttcaaaagc 3961 aaatctcatg tatgaggaag gcaagcacat gcaaccagtt tacaccgcag cactcaaaga 4021 cgagctcgtg aaaactgaca aaatttatgg caaaatcaag aaaagactcc tgtggggttc 4081 tgacctctct acaatgattc gatgcgccag agcatttggt ggtctcatgg atgaattcaa 4141 agcaaattgt attacactcc ctatcagagt tggtatgaat atgaatgaag atggtcccat 4201 aatatttgag aaacactcca ggtacaggta ccactatgat gctgattact cccgctggga 4261 ctccacacaa cagcgggcag tgctggaagc ggcacttgaa atcatggtga gattttctgc 4321 tgagccacag ctggcacaaa tagtggcaga ggacctgctg tcaccaagtg tggttgatgt 4381 gggcgatttc aaaatcgcta tcaatgaagg cctaccatct ggcgtgcctt gcacctcaca 4441 atggaattct attgcccact ggttacttac cttgtgtgcc ctttctgaag tgacaggatt 4501 aggtcctgac atcatacaag ctaactccat gtactctttc tatggtgatg atgagattgt 4561 gagcacagac ataaaattgg acccagagaa attgaccgca aagctcaaag aatatggcct 4621 taaacctact cggcccgaca aaactgaggg gccgttggtg attagtgagg acctgaatgg 4681 gttaactttc ctccgccgaa cagtcacccg tgatccagca ggttggtttg gaaagttgga 4741 ccaaaactcc atcctcaggc agttgtactg gacaagagga cccaaccatg aagaccccag 4801 tgagaccatg ataccacacg cacaaagacc tgtgcagctc atggcactac taggagaatc 4861 ctccctacat ggaccctcat tttacagcaa ggttagcaaa ttagtcatat ctgaacttaa 4921 agagggagga atggattttt atgtgcccag acaagagtca atgttcagat ggatgaggtt 4981 ctcagatcta agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga 5041 tggcgtcgaa tgacgccgct ccatctaatg atggtgctgc tggtctcgta ccagagggca 5101 acaacgagac ccttccccta gaaccagttg cgggcgcagc tatagccgca cccgtcactg 5161 gccaaaataa cataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatggag 5221 agttcacagt gtcacccaga aactctcctg gagaaatttt attaaactta gagttgggcc 5281 ctgatttgaa cccttatttg gctcatttgt caaggatgta caatgggtat gctggtggag 5341 tggaagttca ggttctcctg gcagggaacg cgttcactgc cggaaagatc ctcttcgccg 5401 ccgtcccgcc aaatttccca gtggaattct taagtccagc ccagatcaca atgctcccac 5461 atttaatagt agatgttagg actcttgaac caattatgat cccactccct gatgttagga 5521 atacattctt ccattatagt aaccagccta acagccgcat gagattagtg gctatgctct 5581 ataccccact cagatctaat ggctcaggtg atgatgtctt tactgtctct tgcagggttt 5641 tgactaggcc tactcctgat tttgagttca cttatttagt gccaccttct gttgaatcta 5701 aaactaagcc tttttcctta cctattttaa ccctttctga gctcacaaat tcgaggttcc 5761 cagtccccat cgattcgctt ttcaccgccc agaataatgc gttgcaggtg cagtgtcaaa 5821 atggcaggtg tacacttgat ggtgagttac aaggcacaac ccagttgctc ccatctggca 5881 tctgtgcatt cagaggacgg gtgacagcac aaattaacca acgtgacagg tggcacatgc 5941 aactgcaaaa ccttaatggt acaacatatg acccaactga tgatgtgcca gccccgttgg 6001 gtacacctga cttcaagggc gtcgtgtttg ggatggtaag ccaaagaaat gtgggtaatg 6061 atgcgcctgg ctcaaccaga gcccaacagg cgtgggtttc aacctatagc ccccaatttg 6121 tccccaaatt aggttctgtc aatcttagaa ttagtgataa tgatgatttc caattccagc 6181 cgacaaaatt cacaccagtg ggcgtcaatg atgacgatga tggccacccg ttcagacaat 6241 gggaactacc aaactattca ggggagctta ccttgaatat gaatcttgcc cccccagttg 6301 ctccaaattt tcctggtgaa caattgttat tcttcagatc tttcgtgcca tgctcaggag 6361 gttacaacca aggtattata gattgtctta ttccccaaga atggattcaa cacttctatc 6421 aggaatcagc accctcccag tcagacgtgg ccctaatcag gtatgtcaac cccgatacgg 6481 gacgtacact gtttgaagca aaattgcaca gatctggtta cattactgtg gctcactctg 6541 gagactatcc tcttgttgtt ccggctgatg gacactttag atttgattct tgggtaaatc 6601 agttttactc actcgcccca atgggaactg ggaatgggcg aaggagggct cagtaatggc 6661 tggggctttc attgcaggat tggcaggcga catgctcacg tcatctgtgg gctcccttgt 6721 gaacgcaggg gcaaacgcca tcaaccaaaa gatagacttt gaaaacaaca aacaactcca 6781 gtctgcttcc tttcagcatg ataaagagat gctccaagcg caggtgaggg caaccaagca 6841 gctgcaatct gaaatgatag ccctaaaaca gggggttttg gccgcaggcg gcttttcccc 6901 cactgatgca gcaaggggat ccattggcgc acccatgaca aaggtgcttg actggtctgg 6961 cactcgatac tgggcgccca attccacaaa gacaactggc tattcgggac aattcacctc 7021 ttcacctgtg catatgccta gcccaaatgc ttcacaatca aaacctgcaa agcctaggtc 7081 tctagctcct tcctcttctt ctagcagtgt ctatagtatg tatactcaat ctactcattt 7141 aacatctggc tcttctagta atgcttcttc tgcctctaca aaattgacaa atttaagctc 7201 tggctcctct caaaacagaa cagcagagtg ggtaaatcaa cagagaagtc ttagcccttt 7261 catgagtggc gcacttaaca tctcacatgt cacgccaccc tcaagtaggg cttccagttc 7321 tgggacggtc tcgaccgtgc ccaaggaagt tttggactcc tggacgtctg cgtttaacac 7381 acacagacag ccgctct //