Typing tool
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Typing tool
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Complete norovirus genomes
| KY348698 | GII.3 | |
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| GII.P12 |
ORF1: 5..5104
ORF2: 5085..6731
ORF3: 6731..7495
LOCUS KY348698 7498 bp RNA linear VRL 23-JUL-2017
DEFINITION Norovirus Hu/Guangzhou/GZ2014-L304/CHN/2014, partial genome.
ACCESSION KY348698
VERSION KY348698.1
KEYWORDS .
SOURCE Norovirus Hu/Guangzhou/GZ2014-L304/CHN/2014
ORGANISM Norovirus Hu/Guangzhou/GZ2014-L304/CHN/2014
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7498)
AUTHORS Xue,L., Wu,Q., Dong,R., Cai,W., Wu,H., Chen,M., Chen,G., Wang,J.
and Zhang,J.
TITLE Comparative phylogenetic analyses of recombinant noroviruses based
on different protein-encoding regions show the
recombination-associated evolution pattern
JOURNAL Sci Rep 7 (1), 4976 (2017)
PUBMED 28694427
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7498)
AUTHORS Xue,L., Wu,Q., Cai,W. and Zhang,J.
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2016) State Key Laboratory of Applied
Microbiology Southern China, Guangdong Institute of Microbiology,
No. 100, Xianliezhong Road, Yuexiu District, Guangzhou, Guangdong
510070, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7498
/organism="Norovirus Hu/Guangzhou/GZ2014-L304/CHN/2014"
/mol_type="genomic RNA"
/isolate="Hu/Guangzhou/GZ2014-L304/CHN/2014"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1744862"
/country="China"
/collection_date="29-Dec-2014"
/note="genotype: GII.P12_GII.3"
CDS 5..5104
/note="ORF1"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="ASL69952.1"
/translation="MKMASNDASAAAAANSNNDNAKSSSDGVLSSMAVTFKRALGARH
KQPPPRETPQRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPD
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
VRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTM
SELKQALKNVAIKSCQIVYGGCTYRLESDGKGDVRVDRVQNATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEEIASKDGC
PKPQDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGRPPKPSVLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5085..6731
/gene="VP1"
CDS 5085..6731
/gene="VP1"
/note="ORF2"
/codon_start=1
/product="major viral capsid protein"
/protein_id="ASL69953.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRTSDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDNEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 6731..7495
/gene="VP2"
CDS 6731..7495
/gene="VP2"
/note="ORF3"
/codon_start=1
/product="minor viral capsid protein"
/protein_id="ASL69954.1"
/translation="MAGAFIAGLAGDILTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKMNQAPKSTPSSGSSVRSLSTQVTSLSS
HSSGSSRSSGSTVASSLPSSSRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgctaata gcaacaacga
61 caacgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcataaac agcctccccc gagggaaaca ccacaaaggc ctccacggcc
181 acccacccca gaactggtca agaagatccc tcctccccca cccaatgggg aggatgagct
241 agtggtttcc tacagcgcca aagatggcgt ttctggtttg cctgaactta ccactgtccg
301 gcaaccggat gagaccaaca cggcattcag tgttccccct ctcaaccaga gggagaacag
361 ggacgccaag gagccgctga ccggaacaat cctggaaatg tgggacgggg agatctatca
421 ttacggtctg tatgtggagc gaggccttgt acttggtgtg cacaaaccac cagctgccat
481 cagcctcgcc aaggttgaac tagcaccact ctctctgttt tggaggccag tgtacacacc
541 acagtatctc atctctccag acactcttag gagactgcat ggagagtcgt tcccctacac
601 agcctttgac aacaactgct atgccttctg ttgttgggtt ctggacctaa acgactcgtg
661 gttgtgcagg agaatgatcc agagaacaac tggcttcttc agaccttacc aagagtggaa
721 caggaaaccc ctccccacca tggatgactc taaattgaaa aaggtagcca acatattctt
781 gtgtgcgcta tcttcgctat tcactaggcc catcaaagac ataataggaa aggtgagacc
841 gctcaacatc cttaacatcc tggcctcatg tgattggact tttgcaggca tagtggaatc
901 tttgatcctc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgccccc ttactaggtg actacgaact gcaagggcct gaggaccttg cagtggaact
1021 cgtaccagta gtgatgggag ggattggttt ggtgctagga ttcaccaaag agaagatcgg
1081 aaaaatgttg tcatctgctg cttccacctt aagagcttgt aaagaccttg gtgcatacgg
1141 actggaaatc ctaaaattgg tcatgaaatg gttcttccca aagaaagagg aagcaaatga
1201 gctagctatg gtgaggtcca ttgaggatgc ggtgctggac ctcgaagcaa ttgagaacaa
1261 ccacatgact gccctcctca aagacaaaga cagcttggca acctacatga ggacccttga
1321 cctcgaggag gagaaagcca ggaagctttc aaccaagtct gcttcacctg acatcgtggg
1381 cacaatcaac gctcttctgg cgagaatcgc cgctgcacgc tccctggtgc atcgggcgaa
1441 agaggaactc tccagcagac caagacctgt tgttgttatg atatcaggta ggccagggat
1501 agggaaaact caccttgcca gggagctagc caagaagatc gcagcttcgc tcacagggga
1561 ccagcgcgtg ggcctcatcc ctcgcaatgg cgttgaccac tgggatgcat acaagggaga
1621 aagagtcgtc ctatgggacg attatggaat gagcaatccc atccacgacg ccctcaggtt
1681 acaggaactt gctgacacct gcccccttac gctaaactgt gacaggattg agaacaaagg
1741 aaaggtcttt gacagtgatg ccataatcat caccactaat ctagccaacc cagcaccatt
1801 ggactatgtc aactttgaag catgctcgag gcgcattgac ttcctcgtgt acgcagaagc
1861 ccctgaggtc gagaaagcaa agcgtgattt cccaggtcaa cctgacatgt ggaagaacgc
1921 atttagctct gacttctcgc acataaaact ggcgctggct ccgcaaggtg gtttcgacaa
1981 gaacggaaac accccacacg ggaaaggcgt tatgaaaact ctcaccactg gttccctcat
2041 cgcccgagca tcagggctac tccatgagag gttagatgag tacgagctgc agggcccaac
2101 tcccaccacc tttaattttg accgcaacaa ggtgcttgcg ttcagacaac ttgctgccga
2161 aaacaagtac ggattgttgg acaccatgag agttggaaaa cagctcaagg atgttaagac
2221 catgtcagag ctcaaacagg cactcaagaa tgtcgcaatc aagagttgtc agatagtgta
2281 tggtggctgc acctacaggc ttgagtctga tggcaagggt gatgtaagag ttgacagagt
2341 tcagaacgcc actgtacaga ccaacaatga gcttgccggc gcactacacc atcttaggtg
2401 cgccagaatc agatattatg tcaagtgtgt tcaggaggcc ctgtattcca tcatccaaat
2461 tgctggggct gcatttgtta ccacgcgcat tgtcaagcgc atgaacatac aagatctctg
2521 gtccaagcca caggtggaag atacagagga aatcgctagc aaggatgggt gcccaaaacc
2581 ccaggatgat gaagagtttg ttgtttcatc cgatgacatc aaaaccgagg gcaagaaagg
2641 gaagaacaag tctggccgtg gcaagaagca cacagcattc tcaagtaaag gtctcagtga
2701 tgaggaatac gatgagtata aaagaatcag agaagaaaga aatggcaaat actccataga
2761 ggaatacctc caggacagag acaggtatta tgaggaggtg gccatcgcca gggcaaccga
2821 agaggacttc tgtgaagaag aagaggccaa gatccgacag aggatcttca ggccaacaag
2881 gaaacaacgc aaagaggaga gagcctctct cggtttggtc acaggttctg aaatcaggaa
2941 gaggaaccca gacgacttca agcctaaagg aaagctgtgg gctgatgatg acaggagtgt
3001 tgactacaat gagagactca attttgaagc cccaccaagc atctggtcga ggatagtcaa
3061 ctttggctca ggttggggct tttgggtttc ccccagcctg ttcataacat caactcatgt
3121 cataccccag ggcgcacagg agttctttgg tgtacccatc aaacaaattc agatacacaa
3181 atcaggtgaa ttctgccgct tgaggtttcc aaagccgatc agaactgacg tgacaggcat
3241 gatcttagaa gaaggtgcac ccgaagggac cgtggtcaca ttactcatca aaagaccaac
3301 tggagagctc atgcccctgg cagccagaat gggaacccac gcaaccatga agatacaagg
3361 gcgcactgtt ggaggtcaaa tgggcatgct cctaacagga tccaacgcca agagtatgga
3421 cctgggcacc acaccaggtg actgtggctg cccctacatt tacaagaggg ggaatgacta
3481 cgtggtcatt ggggtccaca cagctgccgc ccgtggagga aacactgtca tttgtgccac
3541 ccaggggagc gagggagaag ccacacttga aggcggtgat agcaagggga cctactgcgg
3601 tgcaccaatc ttaggcccag gaagtgcccc aaaactcagc accaagacca agttctggag
3661 gtcatccacg gcaccactcc cacctggcac ctatgaacca gcttacctcg gcggcaagga
3721 ccccagagtc aagggtggcc cttcactgca acaagttatg agggatcaac tgaaaccatt
3781 cactgagcct aggggtaggc caccaaaacc aagtgtgcta gaagctgcca agaaaaccat
3841 cgtcaatgtc cttgaacaga caattgaccc acctcaaaaa tggtcgtttg cgcaggcatg
3901 cgcatccctt gacaagacca cttctagcgg tcatccgcac cacatgcgga agaacgactg
3961 ctggaacggg gagtccttta caggaaaatt ggcagaccag gcttccaagg ccaacctgat
4021 gtttgaggag ggaaagaaca tgaccccagt ttacacgggt gcgcttaagg acgagctggt
4081 caagactgac aagatttatg gtaagatcaa aaagaggctt ctctggggtt cggacctggc
4141 gaccatgatt cggtgcgctc gagcattcgg gggtctgatg gaggaactca aagcacattg
4201 tgtcacacta cctgttaggg tgggtatgaa tatgaatgag gatggcccta tcatctttga
4261 gagacactcc agatataaat atcattatga tgctgactac tcccggtggg attcaacaca
4321 acaaagagcc gtgttggcag cagccttaga aatcatggtc aagttttccc cagagccgca
4381 cctggcccaa aaggttgcag aagaccttct ttctcccagc gtgatggacg tgggtgattt
4441 caaaatatca atcaatgagg gtctcccctc cggagtgccc tgcacctccc aatggaattc
4501 catcgcccac tggctcctca ctctctgtgc actctccgag gttacaaacc tgtcccctga
4561 cattattcag gccaactctc tcttttcttt ttacggtgat gatgaaattg tgagtacaga
4621 cataaaattg gacccagaaa aactgacagc aaaacttaag gaatacgggt tgaaaccgac
4681 ccgccctgac aagactgaag ggccccttgt catttccgaa gacctgaatg gcctaacctt
4741 cctgcggagg accgtgactc gcgacccagc aggctggttt ggaaagttgg aacagagctc
4801 aatactcaga caaatgtact ggactagggg ccccaaccat gaagatccat ctgaaacaat
4861 gataccacac tcccagaggc ccatacaatt gatgtctttg ctgggtgagg cagcactcca
4921 cggcccagca ttctacagca aaatcagtaa actggtcatt gcagagttga aggaaggtgg
4981 catggatttt tacgtgccaa gacaagagcc aatgttcaga tggatgagat tctcggatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccac tccatctaat gatggtgccg ccggcctcgt cccagagatc aacaatgagg
5161 caatggcgct agatccagtg gcgggtgcag cgatagcagc gcccctcact ggccagcaaa
5221 atataattga tccctggatt atgaataatt ttgtgcaagc acctggtggt gagttcacag
5281 tgtctcctag gaattcccct ggtgaagtgc tcctcaattt ggaattgggc ccagagataa
5341 acccctatct ggcccatctt gctagaatgt ataatggtta tgcaggtggg tttgaagtgc
5401 aggtagtcct agctggaaat gcgtttacag caggaaagat aatctttgca gctatacccc
5461 ctaacttccc aattgacaat ctaagtgcag cacagatcac aatgtgccca catgtgattg
5521 tggatgtcag gcagttggaa ccggtcaacc tcccgatgcc tgacgttcgc aataacttct
5581 tccactacaa ccaagggtct gattcgagat tgcgcttggt tgcaatgctg tacacacctc
5641 ttagggcaaa taactctggg gatgatgttt tcactgtgtc ttgtagagtg ctgactagac
5701 ctagccctga attttcattt aacttccttg tgccacccac tgtggagtca aagacaaaac
5761 cctttaccct cccaattctg actatctctg aaatgtctaa ttctaggttt ccagtgccga
5821 ttgattctct gcacaccagc ccaactgaga atattgttgt ccagtgccaa aatggacgcg
5881 tcactcttga tggtgagttg atgggcacca ctcagctctt acctagtcaa atctgtgctt
5941 tcaggggcgt gctcactaga tcaacaagca ggactagtga ccaggccgac acagcaaccc
6001 ctagattgtt taattattat tggcacatac aattggataa tctaaatggg actccttatg
6061 atcctgcaga agacatacca ggccccctgg ggacaccaga tttccggggc aaagtctttg
6121 gcgtggccag ccaaagaaac cccgacagta caactagagc acatgaagca aaggtggaca
6181 caacagctgg tcgcttcacc ccaaaactag gctcattaga gatatccact gaatctggtg
6241 actttgacca aaaccaacca acaagattca ccccagttgg cattggggtt gacaacgagg
6301 cagacttcca acaatggtcc ttacccgact actctggcca gttcacccac aacatgaact
6361 tagccccagc tgttgctccc aacttccctg gtgagcagct ccttttcttc cgctcacagt
6421 taccatcttc tggtgggcga tccaatggga ttctagactg cctggtcccc caagaatggg
6481 ttcagcactt ctaccaagaa tcagcccccg cccaaaccca ggtggctctg gttagatatg
6541 tcaaccctga cactggtaga gtgttgtttg aggccaagct gcacaaatta ggtttcatga
6601 ctatagctaa gaatggtgac tctccaataa ctgtcccccc aaatggatac tttaggtttg
6661 aatcttgggt gaacccattt tatacacttg cccccatggg aactgggaat gggcgtagaa
6721 gagttcaata atggctggag cttttatagc aggattagct ggtgatatac tcacaaatac
6781 tgtagggtct ctagttaatg caggggctaa tgctattaat caaaaagttg attttgaaaa
6841 taataaatat ttgcaaaatg cttccttcaa tcatgataag gaaatgttaa atgcacagat
6901 tgaggcaaca aagaggttac aggctgacat gattgctatc aaacaggggg ttttgaccgc
6961 tggcggcttt tcccccactg atgcagctcg cggggcaatt aatgccccca tgacaaaagt
7021 cctagattgg aatggaacaa ggtactgggc accaagtgcc acctctacaa cctcgatgtc
7081 gggtggcttc acaaaccagg ctgtgcacag aaccacgcca aattttaaaa tgaaccaggc
7141 cccaaaatcc acacccagca gtgggtcttc agtgaggtca ctctcaaccc aagtcactag
7201 tctgagctca cactcgtccg ggtcgtctcg atccagcggg tctacagttg ctagctcatt
7261 accatcctct agcaggacta gggactgggt caatcagcaa aatttcaatt tggaaccaca
7321 catgcctggg tcacttagga cggcttttgt cactccacca tctagcacag cctctagttc
7381 aggcactgtc tcaaccgtgc ccaaaaatgt tttggactcc tggacatctg cgtttaacac
7441 gcgcagacag ccgctattcg cacaccttcg tagaaggggg gagtcaaatg tttagtga
//