Typing tool
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Typing tool
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Complete norovirus genomes
| KY348697 | GII.3 | |
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| GII.P12 |
ORF1: 2..5098
ORF2: 5079..6725
ORF3: 6725..7489
LOCUS KY348697 7492 bp RNA linear VRL 23-JUL-2017
DEFINITION Norovirus Hu/Guangzhou/GZ2013-L20/CHN/2013, partial genome.
ACCESSION KY348697
VERSION KY348697.1
KEYWORDS .
SOURCE Norovirus Hu/Guangzhou/GZ2013-L20/CHN/2013
ORGANISM Norovirus Hu/Guangzhou/GZ2013-L20/CHN/2013
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7492)
AUTHORS Xue,L., Wu,Q., Dong,R., Cai,W., Wu,H., Chen,M., Chen,G., Wang,J.
and Zhang,J.
TITLE Comparative phylogenetic analyses of recombinant noroviruses based
on different protein-encoding regions show the
recombination-associated evolution pattern
JOURNAL Sci Rep 7 (1), 4976 (2017)
PUBMED 28694427
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7492)
AUTHORS Xue,L., Wu,Q., Cai,W. and Zhang,J.
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2016) State Key Laboratory of Applied
Microbiology Southern China, Guangdong Institute of Microbiology,
No. 100, Xianliezhong Road, Yuexiu District, Guangzhou, Guangdong
510070, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7492
/organism="Norovirus Hu/Guangzhou/GZ2013-L20/CHN/2013"
/mol_type="genomic RNA"
/isolate="Hu/Guangzhou/GZ2013-L20/CHN/2013"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1744851"
/country="China"
/collection_date="14-Nov-2013"
/note="genotype: GII.P12_GII.3"
CDS 2..5098
/note="ORF1"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="ASL69949.1"
/translation="MKMASNDASAAAAANSNNDNAKSSSDGVLSSMAVTFKRALGARH
KQPPPRETPQRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVWQPD
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPVKDIIGK
VRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTM
SELKQALKNVAIKSCQIVYGGCTYRLESDGKGDVRVDRVQNATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEEIAKDGCP
KPQDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVT
GSEIRKRNPDDFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSPS
LFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGT
VVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDC
GCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGP
GSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPR
GRPPKPSVLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWN
GESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLA
TMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDS
TQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKE
YGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPN
HEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5079..6725
/gene="VP1"
CDS 5079..6725
/gene="VP1"
/note="ORF2"
/codon_start=1
/product="major viral capsid protein"
/protein_id="ASL69950.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESDDFDQNQP
TRFTPVGIGVDHEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 6725..7489
/gene="VP2"
CDS 6725..7489
/gene="VP2"
/note="ORF3"
/codon_start=1
/product="minor viral capsid protein"
/protein_id="ASL69951.1"
/translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKMNQAPKSTPSSGSSVRSLSTQVTSLSS
HSSGSSRSSGSTVASSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 aatgaagatg gcgtctaacg acgcttccgc tgccgctgct gccaatagca acaacgacaa
61 cgcaaaatct tcaagtgacg gagtgctttc tagcatggct gtcactttta aacgagccct
121 cggggcgcgg cataaacagc ctcccccgag ggaaacacca caaaggcctc cacggccacc
181 caccccagaa ctggtcaaaa agatccctcc tcccccaccc aacggggagg atgagctagt
241 ggtctcttac agcgccaaag atggcgtttc tggtttgcct gaacttacca ctgtctggca
301 accggatgag accaacacgg cattcagtgt tccccctctc aaccagaggg agaacaggga
361 cgccaaggag ccgctgaccg gaacaatcct ggaaatgtgg gacggggaga tctatcatta
421 cggtctgtat gtggagcgag gccttgtact tggtgtgcac aaaccaccag ctgccatcag
481 cctcgccaag gttgaactag caccactctc tctgttttgg aggccagtgt acacaccaca
541 gtatctcatc tctccagaca ctcttaggag gctgcatgga gagtcgttcc cctacacagc
601 ctttgacaac aactgctatg ccttctgttg ttgggttctg gacctaaacg actcgtggtt
661 gtgcaggaga atgatccaga gaacaactgg cttcttcaga ccttaccaag aatggaacag
721 gaagcccctc cccaccatgg atgactctaa attgaaaaag gtagccaaca tattcttgtg
781 tgcgctatct tcgctattca ctaggcccgt caaagacata ataggaaaag tgagaccgct
841 caacatcctt aacatcctgg cctcatgtga ttggactttt gcaggcatag tggaatcttt
901 gatcctcttg gcagagctct ttggagtttt ctggacaccc ccagatgtgt ctgcgatgat
961 cgccccctta ctaggtgact acgaactgca ggggcctgag gaccttgcag tggaactcgt
1021 accagtagtg atgggaggga ttggtttggt gttaggattc accaaagaga agatcggaaa
1081 aatgttgtca tctgctgctt ccaccttaag agcttgtaaa gaccttggtg catacggact
1141 ggaaatccta aaattggtca tgaaatggtt cttcccaaag aaagaggaag caaatgagct
1201 agctatggtg aggtccattg aggatgcggt gctggacctc gaagcaattg agaacaacca
1261 catgactgcc ctcctcaaag acaaagacag cttggcaacc tacatgagga cccttgacct
1321 cgaggaggag aaagccagga agctttcaac caagtctgct tcacctgaca tcgtgggcac
1381 aatcaacgct cttctggcga gaatcgccgc tgcacgttcc ctggtgcatc gggcgaaaga
1441 ggaactctcc agcagaccaa gacctgttgt tgttatgata tcaggtaggc cagggatagg
1501 gaaaactcac cttgccaggg agctagccaa gaagatcgca gcttcgctca caggggacca
1561 gcgcgtgggc ctcatccctc gcaatggcgt tgaccactgg gatgcataca agggagaaag
1621 agtcgtccta tgggacgatt atggaatgag caatcccatc cacgacgccc tcaggttaca
1681 ggaacttgct gacacctgcc cccttacgct aaactgtgac aggattgaga acaaaggaaa
1741 ggtctttgac agtgatgcca taatcatcac cactaatcta gccaacccag caccattgga
1801 ctatgtcaac tttgaagcat gctcgaggcg cattgacttc ctcgtgtacg cagaagcccc
1861 tgaggtcgag aaagcaaagc gtgatttccc aggacaacct gacatgtgga agaacgcatt
1921 tagctctgac ttctcgcaca taaaactggc gctggctccg caaggtggtt tcgacaagaa
1981 cggaaacacc ccacacggga aaggcgttat gaaaactctc accactggtt ccctcatcgc
2041 ccgagcatca gggctactcc atgagaggtt agatgagtac gagctgcagg gcccaactcc
2101 caccaccttt aattttgacc gcaacaaggt gcttgcgttc agacaacttg ctgccgaaaa
2161 caagtacgga ttgttggaca caatgagagt tggaaaacag ctcaaggatg ttaagaccat
2221 gtcagagctc aaacaggcac tcaagaatgt cgcaatcaag agttgtcaga tagtgtatgg
2281 tggctgcacc tacaggcttg agtctgatgg caagggtgat gtaagagttg acagagttca
2341 gaacgccact gtacagacca acaatgagct tgccggcgca ctacaccatc ttaggtgcgc
2401 cagaatcaga tattatgtca agtgtgttca ggaggccctg tattccatca tccaaattgc
2461 tggggctgca tttgttacca cgcgcattgt caagcgcatg aacatacaag atctctggtc
2521 caagccacag gtggaggata cagaggaaat cgctaaggat gggtgcccaa aaccccagga
2581 tgatgaagaa tttgttgtct catccgatga catcaaaacc gagggcaaga aagggaagaa
2641 caagtctggc cgtggcaaga agcacacagc attctcaagt aaaggtctca gtgatgaaga
2701 gtacgatgag tacaaaagaa tcagagaaga aagaaatggc aaatactcca tagaggaata
2761 cctccaggac agagacaggt attatgagga ggtggccatc gccagggcaa ccgaagagga
2821 cttctgtgaa gaagaagagg ccaagatccg acagaggatc ttcaggccaa caaggaaaca
2881 acgcaaagag gagagagcct ctctcggttt ggtcacaggt tctgaaatca ggaagaggaa
2941 cccagacgac ttcaagccta aaggaaagct gtgggcagat gatgacagga gtgttgacta
3001 caatgagaga ctcaattttg aagccccacc aagcatctgg tcgaggatag tcaactttgg
3061 ctcaggttgg ggcttttggg tttcccccag cctgttcata acatcaactc atgtcatacc
3121 ccagggcgca caggagttct ttggtgtacc catcaaacaa attcagatac acaaatcagg
3181 tgaattctgc cgcttgaggt ttccaaaacc gatcagaact gacgtgacag gcatgatctt
3241 agaagaaggt gcacccgaag ggaccgtggt cacattactc atcaaaagac caactggaga
3301 gctcatgccc ctggcagcca gaatgggaac ccacgcaacc atgaagatac aagggcgcac
3361 tgttggaggt caaatgggca tgctcctaac aggatccaac gccaagagta tggacctggg
3421 caccacacca ggtgactgtg gctgccccta catttacaag agggggaatg actacgtggt
3481 cattggggtc cacacagctg ccgcccgtgg aggaaacact gtcatttgtg ccacccaggg
3541 gagcgaggga gaagccacac ttgaaggcgg tgatagcaag gggacctact gcggtgcacc
3601 aatcttaggt ccaggaagtg ccccaaaact cagcaccaag accaagttct ggaggtcatc
3661 cacggcacca ctcccacctg gtacctatga accagcttac ctcggcggca aggaccccag
3721 agttaagggt ggcccttcac tgcaacaagt tatgagggat caactgaaac cattcactga
3781 gcctaggggt aggccaccaa aaccaagtgt gctagaagct gccaagaaaa ccatcgtcaa
3841 tgtccttgaa cagacaattg acccacctca aaaatggtcg tttgcgcagg catgcgcatc
3901 ccttgacaag accacttcta gcggtcatcc gcaccacatg cggaagaacg actgctggaa
3961 cggggagtcc tttacaggaa aattggcaga ccaggcttcc aaggccaacc tgatgtttga
4021 ggagggaaag aacatgaccc cagtttacac gggtgcgctt aaggacgagc tggtcaagac
4081 tgacaagatt tatggtaaga tcaaaaagag gcttctctgg ggttcggacc tggcgaccat
4141 gattcggtgc gctcgagcat tcgggggtct gatggaggaa ctcaaagcac attgtgtcac
4201 actacctgtt agggtgggta tgaatatgaa tgaggatggc cctatcatct ttgagagaca
4261 ctccagatat aaatatcatt atgatgctga ctactcccgg tgggattcaa cacaacaaag
4321 agccgtgttg gcagcagcct tagaaatcat ggtcaagttt tccccagagc cgcacctggc
4381 ccaaaaggtt gcagaagacc ttctttctcc cagcgtgatg gacgtgggtg acttcaaaat
4441 atcaatcaat gagggtctcc cctccggagt gccctgcacc tcccaatgga attccatcgc
4501 ccactggctc ctcactctct gtgcactctc cgaggttaca aacctgtccc ctgacattat
4561 tcaggccaac tctctctttt ctttctacgg tgatgatgaa attgtgagta cagacataaa
4621 attggaccca gaaaaactga cagcaaaact taaggaatac gggttgaaac cgacccgccc
4681 tgacaagaca gaagggcctc ttgtcatttc cgaagacctg aatggcctaa ccttcctgcg
4741 gaggaccgtg actcgcgacc cagcaggctg gtttggaaag ttggaacaga gctcaatact
4801 cagacaaatg tactggacta ggggccccaa ccatgaagat ccatctgaaa caatgatacc
4861 acactcccag aggcccatac aattgatgtc tttgctgggt gaggcagcac tccacggccc
4921 agcattctac agcaaaatca gtaaactggt cattgcagag ttgaaggaag gtggcatgga
4981 tttctacgtg ccaagacaag agccaatgtt cagatggatg agattctcgg atctgagcac
5041 gtgggagggc gatcgcaatc tggctcccag ttttgtgaat gaagatggcg tcgaatgacg
5101 ccactccatc taatgatggt gccgccggcc tcgtcccaga gatcaacaat gaggcaatgg
5161 cgctagatcc agtggcgggt gcagcgatag cagcacccct cactggccag caaaatataa
5221 ttgatccctg gattatgaat aattttgtgc aagcacctgg tggtgagttc acagtgtctc
5281 ctaggaattc ccctggtgaa gtgctcctca atttggaatt gggcccagag ataaacccct
5341 atctggccca tcttgctaga atgtataatg gttatgcagg tgggtttgaa gtgcaggtag
5401 tcctagctgg aaatgcgttt acagcaggaa agataatctt tgcagctata ccccctaact
5461 tcccaattga caatctaagt gcagcacaga tcacaatgtg cccacatgtg attgtggatg
5521 tcaggcagtt ggaaccggtc aacctcccga tgcctgacgt tcgcaataac ttcttccact
5581 acaaccaagg gtctgattcg agattgcgct tggttgcaat gctgtacaca cctcttaggg
5641 caaacaactc tggggatgat gttttcactg tgtcttgtag agtgctgact agacctagcc
5701 ctgaattttc atttaacttc cttgtgccac ccactgtgga gtcaaaaaca aaacccttca
5761 ctctcccaat tctgactatc tctgaaatgt ctaattctag gtttccagtg ccgattgatt
5821 ctctgcacac cagcccaact gagaatattg ttgtccagtg ccaaaatgga cgcgtcactc
5881 ttgatggtga gttgatgggc accactcagc tcttacctag tcaaatctgt gctttcaggg
5941 gcgtgctcac tagatcaaca agcagggcta gtgaccaggc cgacacagca acccctagat
6001 tgtttaatta ttattggcat atacaattgg ataatctaaa tgggactcct tatgatcctg
6061 cagaagacat accaggcccc ctggggacac cagatttccg gggcaaagtc tttggcgtgg
6121 ccagccaaag aaaccccgac agtacaacta gagcacatga agcaaaggtg gacacaacag
6181 ctggtcgctt caccccaaaa ctaggctcat tagagatatc cactgaatct gatgactttg
6241 accaaaacca accaacaaga ttcaccccag ttggcattgg ggttgaccac gaggcagact
6301 tccaacaatg gtccttaccc gactactctg gccagttcac tcacaacatg aacttagccc
6361 cagctgttgc tcccaacttc cctggtgagc agctcctttt cttccgctca cagttaccat
6421 cttctggtgg gcgatccaat gggattctag actgcctggt cccccaagaa tgggttcagc
6481 acttctacca agaatcagcc cccgcccaaa cccaggtggc tctggttaga tatgtcaacc
6541 ctgacactgg tagagtgttg tttgaggcca agctgcacaa attaggtttc atgactatag
6601 ctaagaatgg tgactctcca ataactgtcc ccccaaatgg atactttagg tttgaatctt
6661 gggtgaaccc attttataca cttgccccca tgggaactgg gaatgggcgt agaagagttc
6721 aataatggct ggagctttta tagcaggatt agctggtgat atattcacaa atactgtagg
6781 gtctctagtt aatgcagggg ctaatgctat taatcaaaaa gttgattttg aaaataataa
6841 atatttgcaa aatgcttcct tcaatcatga taaggaaatg ttaaatgcac agattgaggc
6901 aacaaagagg ttacaggctg acatgattgc tatcaaacag ggggttttga ccgctggcgg
6961 cttttccccc actgatgcag ctcgcggggc aattaatgcc cccatgacaa aagtcctaga
7021 ttggaatgga acaaggtact gggcaccaag tgccacctct acaacctcga tgtcgggtgg
7081 cttcacaaat caggctgtgc acagaaccac gccaaatttt aaaatgaacc aggcccccaa
7141 atccacaccc agcagtgggt cttcagtgag gtcactctca acccaagtca ctagtctgag
7201 ctcacactcg tccgggtcgt ctcgatccag cgggtctaca gttgctagct cattaccatc
7261 ctctaacagg actagggact gggtcaatca gcaaaatttc aatttggaac cacacatgcc
7321 tgggtcactt aggacggctt ttgtcactcc accatctagt acagcctcta gttcaggcac
7381 tgtctcaacc gtgcccaaaa atgttttgga ctcctggaca tctgcgttta acacgcgcag
7441 acagccgcta ttcgcacacc ttcgtagaag gggggagtca aatgtttagt ga
//