Typing tool
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Complete norovirus genomes
KY341923 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 1..798 ORF2: 779..2401 ORF3: 2401..3207LOCUS KY341923 3207 bp RNA linear VRL 12-MAR-2017 DEFINITION Norovirus GII.4 strain Hu/GII.4/13164/2015/HUN nonstructural polyprotein (ORF1) gene, partial cds; and capsid protein VP1 (VP1) and capsid protein VP2 (VP2) genes, complete cds. ACCESSION KY341923 VERSION KY341923.1 KEYWORDS . SOURCE Norovirus GII.4 ORGANISM Norovirus GII.4 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3207) AUTHORS Boros,A., Pankovics,P., Komives,S., Liptai,Z., Dobner,S., Ujhelyi,E., Varallyay,G., Zsidegh,P., Bolba,N. and Reuter,G. TITLE Co-infection with coxsackievirus A5 and norovirus GII.4 could have been the trigger of the first episode of severe acute encephalopathy in a six-year-old child with the intermittent form of maple syrup urine disease (MSUD) JOURNAL Arch. Virol. (2017) In press PUBMED 28243803 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 3207) AUTHORS Bolba,N. and Boros,A. TITLE Direct Submission JOURNAL Submitted (13-DEC-2016) Regional Laboratory of Virology, ANTSZ, Baranya County Institute of State Public Health Service, Szabadsag u. 7, Pecs H-7623, Hungary COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3207 /organism="Norovirus GII.4" /mol_type="genomic RNA" /strain="Hu/GII.4/13164/2015/HUN" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:489821" /country="Hungary" /collection_date="2015" gene <1..798 /gene="ORF1" CDS <1..798 /gene="ORF1" /note="RdRp" /codon_start=1 /product="nonstructural polyprotein" /protein_id="AQX33493.1" /translation="WDSTQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGD FQISISEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIV STDIKLDPEKLTAKLKEYGLKPTRPDKTDGPLVISEDLDGLTFLRRTVTRDPAGWFGK LEQSSILRQMYWTRGPNHEDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVI AELKEGGMDFYVPRQEPMFRWMTFSDLSTWEGDRNLAPSFVNEDGVE" gene 779..2401 /gene="VP1" /note="ORF2" CDS 779..2401 /gene="VP1" /codon_start=1 /product="capsid protein VP1" /protein_id="AQX33494.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSFPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" gene 2401..3207 /gene="VP2" /note="ORF3" CDS 2401..3207 /gene="VP2" /codon_start=1 /product="capsid protein VP2" /protein_id="AQX33495.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNIQQASFQHDKEMLQAQVEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS NSSTATSVNSNQTTSTRLGSSAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRA" ORIGIN 1 tgggactcaa cacaacaaag ggatgtgcta gcagcagcac tagaaatcat ggttaagttc 61 tctccagaac cacacctggc ccagatagtt gcagaagacc tcctttcccc tagcgtaatg 121 gacgtaggtg actttcaaat atcaataagt gagggtctcc cctctggggt accttgtacc 181 tcccagtgga attccatcgc ccactggctc ctcactctgt gtgcactctc agaagtcacg 241 gacctgtccc ctgatatcat tcaggccaac tcccttttct ccttctatgg tgatgatgag 301 attgtaagca cagacataaa gttggaccca gagaagctga cagcaaaact caaggagtac 361 gggctgaaac caacccgccc cgacaaaact gatggacccc ttgtcatctc tgaagatctg 421 gatggcctga cgttcctccg gagaactgtg acccgtgatc cagctggctg gtttggaaaa 481 ttggaacaaa gttcaattct caggcaaatg tactggacca ggggtcccaa ccatgaagat 541 ccatttgaaa caatgatacc acactctcaa agacccatac aattgatgtc cttgctgggc 601 gaggctgcac tccacggccc ggcattctat agcaaaatta gcaaattagt cattgcagag 661 ttgaaggaag gtggcatgga tttttacgtg cccagacaag agccaatgtt cagatggatg 721 acattctcag atctgagcac gtgggagggc gatcgcaatc tggctcccag ttttgtgaat 781 gaagatggcg tcgagtgacg ccaacccatc tgatgggtcc gcagccaacc tcgtcccaga 841 ggtcaacaat gaggttatgg ctctggagcc cgttgttggt gccgccattg cggcacctgt 901 agcgggccaa caaaatgtaa ttgacccctg gattagaaat aattttgtac aagcccctgg 961 tggagagttt acagtatccc ctagaaacgc tccaggtgaa atactatgga gcgcgccctt 1021 gggccctgat ttaaatccct acctatccca tttggccaga atgtacaatg gttatgcagg 1081 tggctttgaa gtgcaggtaa ttctcgcggg gaatgcgttc accgccggga aggtcatatt 1141 tgcagcagtc ccaccaaatt ttccaactga aggcttgagc cccagccagg tcactatgtt 1201 cccccatata gtagtagatg ttaggcaact agaacctgtg ttgattccct tacccgatgt 1261 taggaacaat ttctatcatt acaatcaatc aaatgaccct accattaaat tgatagcaat 1321 gttgtataca ccacttaggg ctaataatgc tggggatgat gtcttcacag tttcttgccg 1381 agtcctcacg agaccatccc ccgattttga tttcatattt ctagtgccac ccacagttga 1441 gtcaagaact aaaccattct ctttcccagt tttaactgtt gaggagatga ccaattcaag 1501 attccccatt cctttggaaa agttgttcac gggtcccagc agtgcctttg ttgtccaacc 1561 acaaaacggt aggtgcacga ctgatggcgt gctcctaggc accacccaac tgtctcctgt 1621 caacatctgc accttcagag gagatgtcac tcatatcaca ggtagtcgta actacacaat 1681 gaatttggct tctcaaaatt ggaacaatta tgacccaaca gaagaaatcc cagcccctct 1741 aggaactcca gattttgtgg ggaagatcca aggcgtgctc acccaaacca caaggacaga 1801 tggctcaaca cgcggccaca aagctacagt gtatactggg agcgccgatt ttgctccaaa 1861 actgggtaga gttcaatttg aaactgacac agaccatgat tttgaagcta accaaaacac 1921 aaagttcacc ccagttggtg tcatccaaga tggtagcacc acccaccgaa acgaacccca 1981 acagtgggtg ctcccaagtt actcaggcag aaatactcct aatgtgcatt tggcccccgc 2041 tgtggccccc acttttccgg gtgagcaact tctcttcttc agatccacca tgcccggatg 2101 cagcgggtac cccaacatgg atttggactg tctgctcccc caggaatggg tgcagtactt 2161 ctaccaagag gcagccccag cacaatctga tgtggctctg ctaagatttg tgaatccaga 2221 cacaggtagg gttttgtttg agtgtaagct tcataaatca ggctatgtta cagtggctca 2281 cactggccaa catgatttgg ttatcccccc caatggttat tttaggtttg attcctgggt 2341 aaaccagttt tacacgcttg cccccatggg aaatggaacg gggcgtagac gtgcactata 2401 atggctggag ctttctttgc tggattggca tctgatgtcc ttggctctgg acttggttcc 2461 cttatcaatg ctggggctgg ggccatcaac caaaaagttg agtttgaaaa taacagaaaa 2521 ttgcaacaag catccttcca atttagcagc aatatacaac aagcttcctt tcaacatgac 2581 aaagagatgc tccaagcaca agttgaggcc accaaaaagt tacaacagga aatgatgaaa 2641 gttaagcagg caatgctcct agagggtggg ttctctgaga cagatgcagc ccgcggggca 2701 atcaacgccc ctatgacaaa agctttggac tggagcggga caaggtactg ggctcccgat 2761 gctaggacta caacatacaa tgcaggccgc ttttccaccc ctcaaccatc gggggcactg 2821 ccaggaagag ctaatcttag ggatgctgtc cctgctcggg gttcctccag caagtcttct 2881 aattcttcta ctgctacttc tgttaactca aatcaaacca cttcaacgag acttggttct 2941 tcagctggtt ctggtaccag tgtctcgagc ttcccgtcaa ctgcaaggac taggagctgg 3001 gttgaggatc aaagtaggaa tttgtcacct ttcatgaggg gggcccacaa catatcgttt 3061 gtcaccccac catctagcag atcctctagc caaggcacag tctcaaccgt gcctaaagag 3121 attttggact cctggactgg cgctttcaac acgcgcaggc agccactctt cgctcacatt 3181 cgtaagcgag gggagtcacg ggcgtaa //