Human calicivirus
Typing tool

Complete norovirus genomes

KY210977  GII.4 Sydney
 GII.P31

Length: 3,301 | 3 CDS 

ORF1: 1..825
ORF2: 806..2428
ORF3: 2428..3234

LOCUS       KY210977                3301 bp    RNA     linear   VRL 12-APR-2024
DEFINITION  Norovirus GII strain Hu/GII.Pe-GII.4/RUS/Novosibirsk/NS16-C13/2016
            nonstructural polyprotein, RNA-dependent RNA polymerase region,
            (ORF1) gene, partial cds; and major capsid protein VP1 (ORF2) and
            minor capsid protein VP2 (ORF3) genes, complete cds.
ACCESSION   KY210977
VERSION     KY210977.2
KEYWORDS    .
SOURCE      Norovirus GII
  ORGANISM  Norovirus GII
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE   1  (bases 1 to 3301)
  AUTHORS   Zhirakovskaia,E.V., Tikunov,A.Y., Sokolov,S.N., Kravchuk,B.I.,
            Krasnova,E.I. and Tikunova,N.V.
  TITLE     Characterization of the complete genome sequence of the recombinant
            norovirus GII.P16/GII.4_Sydney_2012 revealed in Russia
  JOURNAL   Vavilovskii Zhurnal Genet Selektsii 24 (1), 69-79 (2020)
   PUBMED   33659783
REFERENCE   2  (bases 1 to 3301)
  AUTHORS   Zhirakovskaya,E. and Tikunova,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2016) Siberian Branch of the Russian Academy of
            Sciences, Institute of Chemical Biology and Fundamental Medicine
            (ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia
COMMENT     On May 6, 2019 this sequence version replaced KY210977.1.
            
            ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..3301
                     /organism="Norovirus GII"
                     /mol_type="genomic RNA"
                     /strain="Hu/GII.Pe-GII.4/RUS/Novosibirsk/NS16-C13/2016"
                     /isolation_source="feces"
                     /host="Homo sapiens; sex: F; age: 4 M"
                     /db_xref="taxon:122929"
                     /geo_loc_name="Russia: Novosibirsk"
                     /collection_date="Apr-2016"
                     /note="genotype: GII.Pe/GII.4_Sydney 2012"
     gene            <1..825
                     /gene="ORF1"
     CDS             <1..825
                     /gene="ORF1"
                     /codon_start=1
                     /product="nonstructural polyprotein"
                     /protein_id="ATD10873.1"
                     /translation="YHYDADYSRWDSTQQRDVLAAALEIMVKFSPEPHLAQIVAEDLL
                     SPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLF
                     SFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVT
                     RDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHSQRPIQLMSLLGEAALHGPAF
                     YSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     mat_peptide     <1..822
                     /gene="ORF1"
                     /product="RNA-dependent RNA polymerase"
     gene            806..2428
                     /gene="ORF2"
     CDS             806..2428
                     /gene="ORF2"
                     /codon_start=1
                     /product="major capsid protein VP1"
                     /protein_id="ATD10874.2"
                     /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
                     QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
                     FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
                     VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
                     TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
                     QLSPVNICTFRGDVTHITGSHAYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGVL
                     TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG
                     GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
                     CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
                     IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
     gene            2428..3234
                     /gene="ORF3"
     CDS             2428..3234
                     /gene="ORF3"
                     /codon_start=1
                     /product="minor capsid protein VP2"
                     /protein_id="QCL08254.1"
                     /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
                     SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
                     APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS
                     NSSTATSVYSNQTISTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
                     SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRA"
     3'UTR           3235..3280
ORIGIN      
        1 tatcactatg atgcagatta ttcccggtgg gactcaacac aacaaaggga tgtgctagca
       61 gcagcactag aaatcatggt taagttctct ccagaaccac acctggccca gatagttgca
      121 gaagacctcc tctcccctag cgtgatggat gtaggtgact ttcaaatatc aataagtgag
      181 ggtctcccct ctggggtacc ttgtacctcc cagtggaatt ccatcgccca ctggctcctc
      241 actctgtgtg cactctctga agtcacggac ctgtcccctg atatcattca ggccaactcc
      301 cttttctcct tctacggtga tgatgagatt gtaagcacag acataaagtt ggacccagag
      361 aagttgacag caaaactcaa ggagtacggg ctgaaaccaa cccgccccga caaaactgaa
      421 ggaccccttg ttatctctga agacctggat ggtctgacat tcctccggag aactgtgacc
      481 cgtgatccag ctggctggtt tggaaaattg gaacaaagtt caattcttag gcaaatgtac
      541 tggaccaggg gtcccaacca tgaagatcca tttgaaacaa tgataccaca ctcccaaaga
      601 cccatacaat tgatgtcctt gctgggcgag gctgcactcc acggcccggc attctacagc
      661 aaaattagca aattagtcat tgcagagttg aaggaaggtg gcatggactt ttacgtaccc
      721 agacaagagc caatgttcag atggatgaga ttctcagatc tgagcacgtg ggagggcgat
      781 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg agtgacgcca acccatctga
      841 tgggtccgca gccaacctcg tcccagaggt caacaatgag gttatggctc tggagcccgt
      901 tgttggtgcc gccattgcgg cacctgtagc gggccaacaa aatgtaattg acccctggat
      961 tagaaataat tttgtacaag cccctggtgg agagtttaca gtatccccta gaaacgctcc
     1021 aggtgaaata ctatggagcg cgcccttggg ccctgatcta aatccctacc tgtcccattt
     1081 ggccagaatg tacaatggtt atgcaggtgg ttttgaagtg caggtgattc tcgcggggaa
     1141 cgcgttcacc gccgggaagg tcatatttgc agcagtccca ccaaattttc caactgaagg
     1201 cttgagcccc agccaggtca ctatgttccc ccatatagta gtagatgtta ggcaactaga
     1261 acctgtgttg attcccttac ccgatgttag gaataatttc tatcattaca atcaatcaaa
     1321 tgactccacc attaagttga tagcaatgtt gtatacacca cttagggcta ataatgctgg
     1381 ggatgatgtc ttcacagttt cttgccgagt tctcacgaga ccatcccccg attttgactt
     1441 catatttcta gtgccaccca cagttgagtc aagaactaaa ccattctctg tcccagtttt
     1501 gactgttgag gagatgacca attcaagatt ccccattcct ttggaaaagt tgttcacggg
     1561 tcccagcagt gcctttgttg tccaaccaca aaacggtagg tgcacgactg atggcgtgct
     1621 cctaggcacc acccaactgt ctcctgtcaa catctgcacc ttcagaggag atgtcaccca
     1681 tatcacaggt agtcatgcct acacaatgaa tttggcttct caaaattgga gcaattacga
     1741 cccaacagaa gaaatcccag ctcctctagg aactccagac tttgtgggga agattcaagg
     1801 cgtgctcacc caaaccacaa ggacagatgg ctcaacacgc ggtcacaaag ccacagtgta
     1861 cactgggagc gccgactttg ctccaaaact gggtagagtt caatttgaaa ctgacacaaa
     1921 caatgatttt gaagctaacc aaaacacaaa gttcacccca gttggtgtca tccaagatgg
     1981 tggcaccacc caccggaatg agccccagca gtgggtgctc ccaagttact caggcagaaa
     2041 tactcctaac gtgcatctgg cccccgctgt agcccccact tttccgggtg agcaacttct
     2101 cttcttcaga tccaccatgc ccggatgcag cgggtacccc aacatggatt tggactgtct
     2161 gctcccccag gaatgggtgc agtacttcta ccaagaggca gccccagcac aatctgatgt
     2221 ggctctgcta agatttgtga atccagacac aggtagggtt ttgtttgaat gtaagcttca
     2281 taaatcaggc tatgttacag tggctcacac tggccaacat gatttggtta tcccccccaa
     2341 tggttatttt aggtttgatt cctgggtcaa ccagttttac acgcttgccc ccatgggaaa
     2401 tggaacgggg cgtagacgtg cactataatg gctggggctt tctttgctgg attggcatct
     2461 gatgtccttg gctctggact tggttccctt atcaatgctg gggctggggc catcaaccaa
     2521 aaagttgagt ttgaaaataa cagaaaattg caacaagcat ccttccaatt tagcagcaat
     2581 ctacaacagg cttcctttca acatgacaaa gagatgctcc aagcacaaat tgaggccacc
     2641 aaaaggttac aacaggaaat gatgaaagtt aagcaggcaa tgctcctaga gggtgggttc
     2701 tctgagacag atgcagcccg cggggcaatc aacgccccca tgacaaaagc tttggactgg
     2761 agcgggacaa ggtactgggc tcctgatgct aggaccacaa catacaatgc aggccgcttt
     2821 tccacccctc aaccatcggg ggcgctgcca ggaagagcta accttaggga tgctgtccct
     2881 gctcggggtt cctctagtaa gtcttctaat tcttctactg ctacttctgt gtattcaaat
     2941 caaactattt caacgagact tggttctaca gctggttctg gtaccagtgt ctcgagcttc
     3001 ccgtcaactg caaggactag gagctgggtt gaggatcaaa gtaggaattt gtcacctttc
     3061 atgagggggg cccacaacat atcgtttgtc accccaccat ctagcagatc ctctagccaa
     3121 ggcacagtct caaccgtgcc taaagagatt ttggactcct ggactggcgc tttcaacacg
     3181 cgcaggcagc cactcttcgc tcacattcgt aagcgagggg agtcacgggc gtaacgtgaa
     3241 aagacaaagt tgattatctt tcttttcttt agtgtctttt aaaaaaaaaa aaaaaaaaaa
     3301 a
//