Typing tool
|
Complete norovirus genomes
KY210977 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 1..825 ORF2: 806..2428 ORF3: 2428..3234LOCUS KY210977 3301 bp RNA linear VRL 17-APR-2020 DEFINITION Norovirus GII strain Hu/GII.Pe-GII.4/RUS/Novosibirsk/NS16-C13/2016 nonstructural polyprotein, RNA-dependent RNA polymerase region, (ORF1) gene, partial cds; and major capsid protein VP1 (ORF2) and minor capsid protein VP2 (ORF3) genes, complete cds. ACCESSION KY210977 VERSION KY210977.2 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3301) AUTHORS Zhirakovskaia,E.V., Tikunov,A.Y., Sokolov,S.N., Kravchuk,B.I., Krasnova,E.I. and Tikunova,N.V. TITLE Characterization of the complete genome sequence of the recombinant norovirus GII.P16/GII.4_Sydney_2012 revealed in Russia JOURNAL Vavilovskii Zhurnal Genet Selektsii 24 (1), 69-79 (2020) REFERENCE 2 (bases 1 to 3301) AUTHORS Zhirakovskaya,E. and Tikunova,N. TITLE Direct Submission JOURNAL Submitted (22-NOV-2016) Siberian Branch of the Russian Academy of Sciences, Institute of Chemical Biology and Fundamental Medicine (ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia COMMENT On May 6, 2019 this sequence version replaced KY210977.1. ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3301 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Hu/GII.Pe-GII.4/RUS/Novosibirsk/NS16-C13/2016" /isolation_source="feces" /host="Homo sapiens; sex: F; age: 4 M" /db_xref="taxon:122929" /country="Russia: Novosibirsk" /collection_date="Apr-2016" /note="genotype: GII.Pe/GII.4_Sydney 2012" gene <1..825 /gene="ORF1" CDS <1..825 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="ATD10873.1" /translation="YHYDADYSRWDSTQQRDVLAAALEIMVKFSPEPHLAQIVAEDLL SPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLF SFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVT RDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHSQRPIQLMSLLGEAALHGPAF YSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..822 /gene="ORF1" /product="RNA-dependent RNA polymerase" gene 806..2428 /gene="ORF2" CDS 806..2428 /gene="ORF2" /codon_start=1 /product="major capsid protein VP1" /protein_id="ATD10874.2" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSHAYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGVL TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" gene 2428..3234 /gene="ORF3" CDS 2428..3234 /gene="ORF3" /codon_start=1 /product="minor capsid protein VP2" /protein_id="QCL08254.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS NSSTATSVYSNQTISTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRA" 3'UTR 3235..3280 ORIGIN 1 tatcactatg atgcagatta ttcccggtgg gactcaacac aacaaaggga tgtgctagca 61 gcagcactag aaatcatggt taagttctct ccagaaccac acctggccca gatagttgca 121 gaagacctcc tctcccctag cgtgatggat gtaggtgact ttcaaatatc aataagtgag 181 ggtctcccct ctggggtacc ttgtacctcc cagtggaatt ccatcgccca ctggctcctc 241 actctgtgtg cactctctga agtcacggac ctgtcccctg atatcattca ggccaactcc 301 cttttctcct tctacggtga tgatgagatt gtaagcacag acataaagtt ggacccagag 361 aagttgacag caaaactcaa ggagtacggg ctgaaaccaa cccgccccga caaaactgaa 421 ggaccccttg ttatctctga agacctggat ggtctgacat tcctccggag aactgtgacc 481 cgtgatccag ctggctggtt tggaaaattg gaacaaagtt caattcttag gcaaatgtac 541 tggaccaggg gtcccaacca tgaagatcca tttgaaacaa tgataccaca ctcccaaaga 601 cccatacaat tgatgtcctt gctgggcgag gctgcactcc acggcccggc attctacagc 661 aaaattagca aattagtcat tgcagagttg aaggaaggtg gcatggactt ttacgtaccc 721 agacaagagc caatgttcag atggatgaga ttctcagatc tgagcacgtg ggagggcgat 781 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg agtgacgcca acccatctga 841 tgggtccgca gccaacctcg tcccagaggt caacaatgag gttatggctc tggagcccgt 901 tgttggtgcc gccattgcgg cacctgtagc gggccaacaa aatgtaattg acccctggat 961 tagaaataat tttgtacaag cccctggtgg agagtttaca gtatccccta gaaacgctcc 1021 aggtgaaata ctatggagcg cgcccttggg ccctgatcta aatccctacc tgtcccattt 1081 ggccagaatg tacaatggtt atgcaggtgg ttttgaagtg caggtgattc tcgcggggaa 1141 cgcgttcacc gccgggaagg tcatatttgc agcagtccca ccaaattttc caactgaagg 1201 cttgagcccc agccaggtca ctatgttccc ccatatagta gtagatgtta ggcaactaga 1261 acctgtgttg attcccttac ccgatgttag gaataatttc tatcattaca atcaatcaaa 1321 tgactccacc attaagttga tagcaatgtt gtatacacca cttagggcta ataatgctgg 1381 ggatgatgtc ttcacagttt cttgccgagt tctcacgaga ccatcccccg attttgactt 1441 catatttcta gtgccaccca cagttgagtc aagaactaaa ccattctctg tcccagtttt 1501 gactgttgag gagatgacca attcaagatt ccccattcct ttggaaaagt tgttcacggg 1561 tcccagcagt gcctttgttg tccaaccaca aaacggtagg tgcacgactg atggcgtgct 1621 cctaggcacc acccaactgt ctcctgtcaa catctgcacc ttcagaggag atgtcaccca 1681 tatcacaggt agtcatgcct acacaatgaa tttggcttct caaaattgga gcaattacga 1741 cccaacagaa gaaatcccag ctcctctagg aactccagac tttgtgggga agattcaagg 1801 cgtgctcacc caaaccacaa ggacagatgg ctcaacacgc ggtcacaaag ccacagtgta 1861 cactgggagc gccgactttg ctccaaaact gggtagagtt caatttgaaa ctgacacaaa 1921 caatgatttt gaagctaacc aaaacacaaa gttcacccca gttggtgtca tccaagatgg 1981 tggcaccacc caccggaatg agccccagca gtgggtgctc ccaagttact caggcagaaa 2041 tactcctaac gtgcatctgg cccccgctgt agcccccact tttccgggtg agcaacttct 2101 cttcttcaga tccaccatgc ccggatgcag cgggtacccc aacatggatt tggactgtct 2161 gctcccccag gaatgggtgc agtacttcta ccaagaggca gccccagcac aatctgatgt 2221 ggctctgcta agatttgtga atccagacac aggtagggtt ttgtttgaat gtaagcttca 2281 taaatcaggc tatgttacag tggctcacac tggccaacat gatttggtta tcccccccaa 2341 tggttatttt aggtttgatt cctgggtcaa ccagttttac acgcttgccc ccatgggaaa 2401 tggaacgggg cgtagacgtg cactataatg gctggggctt tctttgctgg attggcatct 2461 gatgtccttg gctctggact tggttccctt atcaatgctg gggctggggc catcaaccaa 2521 aaagttgagt ttgaaaataa cagaaaattg caacaagcat ccttccaatt tagcagcaat 2581 ctacaacagg cttcctttca acatgacaaa gagatgctcc aagcacaaat tgaggccacc 2641 aaaaggttac aacaggaaat gatgaaagtt aagcaggcaa tgctcctaga gggtgggttc 2701 tctgagacag atgcagcccg cggggcaatc aacgccccca tgacaaaagc tttggactgg 2761 agcgggacaa ggtactgggc tcctgatgct aggaccacaa catacaatgc aggccgcttt 2821 tccacccctc aaccatcggg ggcgctgcca ggaagagcta accttaggga tgctgtccct 2881 gctcggggtt cctctagtaa gtcttctaat tcttctactg ctacttctgt gtattcaaat 2941 caaactattt caacgagact tggttctaca gctggttctg gtaccagtgt ctcgagcttc 3001 ccgtcaactg caaggactag gagctgggtt gaggatcaaa gtaggaattt gtcacctttc 3061 atgagggggg cccacaacat atcgtttgtc accccaccat ctagcagatc ctctagccaa 3121 ggcacagtct caaccgtgcc taaagagatt ttggactcct ggactggcgc tttcaacacg 3181 cgcaggcagc cactcttcgc tcacattcgt aagcgagggg agtcacgggc gtaacgtgaa 3241 aagacaaagt tgattatctt tcttttcttt agtgtctttt aaaaaaaaaa aaaaaaaaaa 3301 a //