Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| KY210971 | GII.4 Sydney | |
|
|---|---|---|---|
| GII.P31 |
ORF1: 1..819
ORF2: 800..2422
ORF3: 2422..3110
LOCUS KY210971 3110 bp RNA linear VRL 12-APR-2024
DEFINITION Norovirus GII strain Hu/GII.Pe-GII.4/RUS/Novosibirsk/NS16-A119/2016
nonstructural polyprotein, RNA-dependent RNA polymerase region,
(ORF1) gene, partial cds; major capsid protein VP1 (ORF2) gene,
complete cds; and minor capsid protein VP2 (ORF3) gene, partial
cds.
ACCESSION KY210971
VERSION KY210971.2
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3110)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Molecular epidemiology of norovirus associated with sporadic
gastroenteritis in Russia
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3110)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (22-NOV-2016) Siberian Branch of the Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine
(ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia
COMMENT On May 6, 2019 this sequence version replaced KY210971.1.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3110
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.Pe-GII.4/RUS/Novosibirsk/NS16-A119/2016"
/isolation_source="feces"
/host="Homo sapiens; sex: F; age: 28 Y"
/db_xref="taxon:122929"
/geo_loc_name="Russia: Novosibirsk"
/collection_date="25-Feb-2016"
/note="genotype: GII.Pe/GII.4_Sydney 2012"
gene <1..819
/gene="ORF1"
CDS <1..819
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="ATD10861.2"
/translation="YDADYSRWDSTQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSP
SVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSF
YGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRD
PAGWFGKLEQSSILRQMYWTKGPNHEDPFETMIPHSQRPIQLMSLLGEAALHGPTFYS
KISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..816
/gene="ORF1"
/product="RNA-dependent RNA polymerase"
gene 800..2422
/gene="ORF2"
CDS 800..2422
/gene="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="QCL08255.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFIVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTMTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
gene 2422..>3110
/gene="ORF3"
CDS 2422..>3110
/gene="ORF3"
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="QCL08253.1"
/translation="MAGAFFAGLVSDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAVLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPPGALPGRANLRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSSAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSS"
ORIGIN
1 tatgatgctg attattcccg gtgggactca acacaacaaa gggatgtgct agcagcagca
61 ctagaaatca tggttaagtt ctctccagaa ccacacctgg cccagatagt tgcagaagac
121 ctcctttccc ctagcgtaat ggatgtaggt gactttcaaa tatcaataag tgagggtctc
181 ccctctgggg taccttgtac ctcccagtgg aattccatcg cccactggct cctcactctg
241 tgtgcactct ctgaagtcac ggacctgtcc cctgatatca ttcaggccaa ctcccttttc
301 tccttctatg gtgatgatga gattgtaagc acagacataa agttggaccc agagaagctg
361 acagcaaaac tcaaggagta cgggctgaaa ccaacccgcc ccgacaaaac tgaaggaccc
421 cttgtcatct ctgaagacct ggacggcctg acattcctcc ggagaactgt gacccgtgat
481 ccagctggct ggtttggaaa attggaacaa agttcaattc tcaggcaaat gtactggacc
541 aagggtccca atcatgaaga tccatttgaa acaatgatac cacactctca aagacccata
601 caactgatgt ccttgctggg cgaggctgca ctccacggcc cgacattcta tagcaaaatt
661 agcaaattag tcattgcaga gttgaaggaa ggtggcatgg atttttacgt gcccagacaa
721 gagccaatgt tcagatggat gagattctcg gatctgagca cgtgggaggg cgatcgcaat
781 ctggctccca gctttgtgaa tgaagatggc gtcgagtgac gccaacccat ctgatgggtc
841 cgcagccaac ctcgtcccag aggtcaacaa tgaggttatg gctctggagc ccgttgttgg
901 tgccgctatt gcggcacctg tagcgggcca acaaaatgta attgacccct ggattagaaa
961 taattttgta caagcccctg gtggggagtt cacagtatcc cctagaaacg ctccaggtga
1021 aatactatgg agcgcgccct tgggccctga tctaaatccc tacctatccc atttggccag
1081 aatgtacaat ggttatgcag gtggctttga agtgcaggta attctcgcgg ggaatgcgtt
1141 caccgccggg aaggtcatat ttgcagcagt cccaccaaat tttccaactg aaggcttgag
1201 ccccagtcag gtcactatgt tcccccatat agtggtagat gttaggcaac tagaacctgt
1261 gttgattccc ttacctgatg ttaggaataa cttctatcat tacaatcaat caaatgaccc
1321 taccataaaa ttgatagcaa tgttgtatac accacttagg gctaataatg ctggggatga
1381 tgtcttcaca gtttcttgcc gagtcctcac gagaccatcc cccgattttg attttatatt
1441 tctagtgcca cccacagttg agtcaagaac taaaccattc tctgtcccag ttttaactgt
1501 tgaggagatg accaattcaa gattccccat tcctttggaa aagttgttca cgggtcccag
1561 tagtgccttt attgtccaac cacaaaacgg taggtgcacg actgatggcg tgctcctagg
1621 caccacccaa ctgtctcctg tcaacatctg caccttcaga ggagatgtca cccatatcac
1681 aggtagtcgt aactacacaa tgaatttggc ttctcaaaat tggaacaatt atgacccaac
1741 agaagaaatc ccagcccctc taggaactcc agattttgtg gggaagattc aaggcatgct
1801 cacccagacc acaatgacag atggctcaac acgcggccac aaagctacag tgtatactgg
1861 gagcgctgac tttgccccaa aactgggtag agttcaattt gaaactgaca cagaccatga
1921 ttttgaagct aaccaaaaca caaagttcac tccagttggt gtcatccaag atggtagcac
1981 cacccaccga aacgaacccc aacagtgggt gctcccaagc tactcaggca gaaatactcc
2041 taatgtgcat ttggcccccg ctgtggctcc cacttttccg ggtgagcaac ttctcttctt
2101 cagatccacc atgcccggat gcagcgggta ccccaacatg gatttggact gtttgctccc
2161 ccaggaatgg gtgcagtact tctaccaaga ggcagcccca gcacaatctg atgtggctct
2221 gctaagattt gtgaatccag acacaggtag ggttttgttt gaatgtaagc ttcataaatc
2281 aggctatgtt acagtggctc acactggcca acatgatttg gttatccccc ccaacggtta
2341 ttttaggttt gattcctggg taaaccagtt ttacacgctt gcccccatgg gaaatggaac
2401 ggggcgtaga cgtgcactat aatggctgga gctttctttg ctggattggt atctgatgtc
2461 cttggctctg gacttggttc ccttatcaat gctggggctg gggccatcaa ccaaaaagtt
2521 gagtttgaaa ataacagaaa attgcaacaa gcatccttcc aatttagcag taatctacaa
2581 caggcttcct ttcaacatga caaagagatg ctccaagcac aaattgaggc caccaaaaag
2641 ctacaacagg aaatgatgaa agttaaacag gcagtgctcc tagagggtgg gttctctgag
2701 acagatgcag cccgcggggc aatcaacgcc cctatgacaa aagctttgga ctggagcggg
2761 acaaggtact gggctcccga tgctaggact acaacataca atgcaggccg cttttccacc
2821 cctcaaccac cgggggcact gccaggaaga gctaacctta gggatgctgt ccctgctcgt
2881 ggttcctcca gcaagtcttc taattcttct actgctactt ctgtgtattc aaatcaaacc
2941 acttcaacga gacttggttc ttcagctggt tctggtacca gtgtctcgag cttcccgtca
3001 actgcaagga ctaggagctg ggttgaggat caaagtagga atttgtcacc ttttatgagg
3061 ggggcccaca acatatcgtt tgtcacccca ccatctagca gatcctctag
//