Typing tool
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Complete norovirus genomes
KY210971 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 1..819 ORF2: 800..2422 ORF3: 2422..3110LOCUS KY210971 3110 bp RNA linear VRL 17-APR-2020 DEFINITION Norovirus GII strain Hu/GII.Pe-GII.4/RUS/Novosibirsk/NS16-A119/2016 nonstructural polyprotein, RNA-dependent RNA polymerase region, (ORF1) gene, partial cds; major capsid protein VP1 (ORF2) gene, complete cds; and minor capsid protein VP2 (ORF3) gene, partial cds. ACCESSION KY210971 VERSION KY210971.2 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3110) AUTHORS Zhirakovskaya,E. and Tikunova,N. TITLE Molecular epidemiology of norovirus associated with sporadic gastroenteritis in Russia JOURNAL Unpublished REFERENCE 2 (bases 1 to 3110) AUTHORS Zhirakovskaya,E. and Tikunova,N. TITLE Direct Submission JOURNAL Submitted (22-NOV-2016) Siberian Branch of the Russian Academy of Sciences, Institute of Chemical Biology and Fundamental Medicine (ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia COMMENT On May 6, 2019 this sequence version replaced KY210971.1. ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3110 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Hu/GII.Pe-GII.4/RUS/Novosibirsk/NS16-A119/2016" /isolation_source="feces" /host="Homo sapiens; sex: F; age: 28 Y" /db_xref="taxon:122929" /country="Russia: Novosibirsk" /collection_date="25-Feb-2016" /note="genotype: GII.Pe/GII.4_Sydney 2012" gene <1..819 /gene="ORF1" CDS <1..819 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="ATD10861.2" /translation="YDADYSRWDSTQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSP SVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSF YGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRD PAGWFGKLEQSSILRQMYWTKGPNHEDPFETMIPHSQRPIQLMSLLGEAALHGPTFYS KISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..816 /gene="ORF1" /product="RNA-dependent RNA polymerase" gene 800..2422 /gene="ORF2" CDS 800..2422 /gene="ORF2" /codon_start=1 /product="major capsid protein VP1" /protein_id="QCL08255.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFIVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML TQTTMTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" gene 2422..>3110 /gene="ORF3" CDS 2422..>3110 /gene="ORF3" /codon_start=1 /product="minor capsid protein VP2" /protein_id="QCL08253.1" /translation="MAGAFFAGLVSDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAVLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPPGALPGRANLRDAVPARGSSSKSS NSSTATSVYSNQTTSTRLGSSAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSS" ORIGIN 1 tatgatgctg attattcccg gtgggactca acacaacaaa gggatgtgct agcagcagca 61 ctagaaatca tggttaagtt ctctccagaa ccacacctgg cccagatagt tgcagaagac 121 ctcctttccc ctagcgtaat ggatgtaggt gactttcaaa tatcaataag tgagggtctc 181 ccctctgggg taccttgtac ctcccagtgg aattccatcg cccactggct cctcactctg 241 tgtgcactct ctgaagtcac ggacctgtcc cctgatatca ttcaggccaa ctcccttttc 301 tccttctatg gtgatgatga gattgtaagc acagacataa agttggaccc agagaagctg 361 acagcaaaac tcaaggagta cgggctgaaa ccaacccgcc ccgacaaaac tgaaggaccc 421 cttgtcatct ctgaagacct ggacggcctg acattcctcc ggagaactgt gacccgtgat 481 ccagctggct ggtttggaaa attggaacaa agttcaattc tcaggcaaat gtactggacc 541 aagggtccca atcatgaaga tccatttgaa acaatgatac cacactctca aagacccata 601 caactgatgt ccttgctggg cgaggctgca ctccacggcc cgacattcta tagcaaaatt 661 agcaaattag tcattgcaga gttgaaggaa ggtggcatgg atttttacgt gcccagacaa 721 gagccaatgt tcagatggat gagattctcg gatctgagca cgtgggaggg cgatcgcaat 781 ctggctccca gctttgtgaa tgaagatggc gtcgagtgac gccaacccat ctgatgggtc 841 cgcagccaac ctcgtcccag aggtcaacaa tgaggttatg gctctggagc ccgttgttgg 901 tgccgctatt gcggcacctg tagcgggcca acaaaatgta attgacccct ggattagaaa 961 taattttgta caagcccctg gtggggagtt cacagtatcc cctagaaacg ctccaggtga 1021 aatactatgg agcgcgccct tgggccctga tctaaatccc tacctatccc atttggccag 1081 aatgtacaat ggttatgcag gtggctttga agtgcaggta attctcgcgg ggaatgcgtt 1141 caccgccggg aaggtcatat ttgcagcagt cccaccaaat tttccaactg aaggcttgag 1201 ccccagtcag gtcactatgt tcccccatat agtggtagat gttaggcaac tagaacctgt 1261 gttgattccc ttacctgatg ttaggaataa cttctatcat tacaatcaat caaatgaccc 1321 taccataaaa ttgatagcaa tgttgtatac accacttagg gctaataatg ctggggatga 1381 tgtcttcaca gtttcttgcc gagtcctcac gagaccatcc cccgattttg attttatatt 1441 tctagtgcca cccacagttg agtcaagaac taaaccattc tctgtcccag ttttaactgt 1501 tgaggagatg accaattcaa gattccccat tcctttggaa aagttgttca cgggtcccag 1561 tagtgccttt attgtccaac cacaaaacgg taggtgcacg actgatggcg tgctcctagg 1621 caccacccaa ctgtctcctg tcaacatctg caccttcaga ggagatgtca cccatatcac 1681 aggtagtcgt aactacacaa tgaatttggc ttctcaaaat tggaacaatt atgacccaac 1741 agaagaaatc ccagcccctc taggaactcc agattttgtg gggaagattc aaggcatgct 1801 cacccagacc acaatgacag atggctcaac acgcggccac aaagctacag tgtatactgg 1861 gagcgctgac tttgccccaa aactgggtag agttcaattt gaaactgaca cagaccatga 1921 ttttgaagct aaccaaaaca caaagttcac tccagttggt gtcatccaag atggtagcac 1981 cacccaccga aacgaacccc aacagtgggt gctcccaagc tactcaggca gaaatactcc 2041 taatgtgcat ttggcccccg ctgtggctcc cacttttccg ggtgagcaac ttctcttctt 2101 cagatccacc atgcccggat gcagcgggta ccccaacatg gatttggact gtttgctccc 2161 ccaggaatgg gtgcagtact tctaccaaga ggcagcccca gcacaatctg atgtggctct 2221 gctaagattt gtgaatccag acacaggtag ggttttgttt gaatgtaagc ttcataaatc 2281 aggctatgtt acagtggctc acactggcca acatgatttg gttatccccc ccaacggtta 2341 ttttaggttt gattcctggg taaaccagtt ttacacgctt gcccccatgg gaaatggaac 2401 ggggcgtaga cgtgcactat aatggctgga gctttctttg ctggattggt atctgatgtc 2461 cttggctctg gacttggttc ccttatcaat gctggggctg gggccatcaa ccaaaaagtt 2521 gagtttgaaa ataacagaaa attgcaacaa gcatccttcc aatttagcag taatctacaa 2581 caggcttcct ttcaacatga caaagagatg ctccaagcac aaattgaggc caccaaaaag 2641 ctacaacagg aaatgatgaa agttaaacag gcagtgctcc tagagggtgg gttctctgag 2701 acagatgcag cccgcggggc aatcaacgcc cctatgacaa aagctttgga ctggagcggg 2761 acaaggtact gggctcccga tgctaggact acaacataca atgcaggccg cttttccacc 2821 cctcaaccac cgggggcact gccaggaaga gctaacctta gggatgctgt ccctgctcgt 2881 ggttcctcca gcaagtcttc taattcttct actgctactt ctgtgtattc aaatcaaacc 2941 acttcaacga gacttggttc ttcagctggt tctggtacca gtgtctcgag cttcccgtca 3001 actgcaagga ctaggagctg ggttgaggat caaagtagga atttgtcacc ttttatgagg 3061 ggggcccaca acatatcgtt tgtcacccca ccatctagca gatcctctag //