Typing tool
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Typing tool
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Complete norovirus genomes
| KY210920 | GII.13 | |
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| GII.P16 |
ORF1: 5..5101
ORF2: 5082..6710
ORF3: 6710..7441
LOCUS KY210920 7506 bp RNA linear VRL 16-APR-2020
DEFINITION Norovirus GII isolate
Hu/GII.P16-GII.13/RUS/Novosibirsk/NS16-A397/2016, complete genome.
ACCESSION KY210920
VERSION KY210920.3
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7506)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Molecular epidemiology of norovirus associated with sporadic
gastroenteritis in Russia
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7506)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2016) Siberian Branch of the Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine
(ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia
REFERENCE 3 (bases 1 to 7506)
AUTHORS Zhirakovskaya,E., Tikunov,A. and Kravchuk,B.
TITLE Direct Submission
JOURNAL Submitted (22-APR-2019) Siberian Branch of the Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine
(ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia
REMARK Sequence update by submitter
COMMENT On Apr 22, 2019 this sequence version replaced KY210920.2.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7506
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.P16-GII.13/RUS/Novosibirsk/NS16-
A397/2016"
/isolation_source="feces"
/host="Homo sapiens; sex: M; age: 87 Y"
/db_xref="taxon:122929"
/country="Russia: Novosibirsk"
/collection_date="24-Jun-2016"
/note="genotype: GII.P16/GII.13"
5'UTR 1..4
gene 5..5101
/gene="ORF1"
CDS 5..5101
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="ATD10759.2"
/translation="MKMASNDATVAVACNSNNDKEKSSGEGLFTNMSSTLKKALGARP
KQPAPRDNSQKPPRPPTPELVKRIPPPPPNGEEEEPVIRYEVKNGISGLPELTTVPQP
DVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAI
SMAKVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLND
SWLNRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIG
KIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLS
TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLARE
VARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADT
CPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVE
KAKRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR
ASGLLHERMDEFELQGPTVTTFNFDRNRIAAFRQLAAENKYGLVDTMRVGNQLKGVKT
MEELKQAIKNVIIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHL
KHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIVRRMNIQELWSKPPLDQNELEAKEEA
PKSEDDEFIISSRDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPS
LFITSTHVIPAGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRSDVTGMILEEGAPEGT
VATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDC
GCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGP
GGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPYHVRKNEFWN
GETFTEKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLS
TMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS
TQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKISINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTKLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLKE
YGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPN
HEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide 5..997
/gene="ORF1"
/product="p48"
mat_peptide 998..2095
/gene="ORF1"
/product="NTPase"
mat_peptide 2096..2626
/gene="ORF1"
/product="p22"
mat_peptide 2627..3025
/gene="ORF1"
/product="VPg"
mat_peptide 3026..3568
/gene="ORF1"
/product="Pro"
mat_peptide 3569..5098
/gene="ORF1"
/product="RNA-dependent RNA polymerase"
gene 5082..6710
/gene="ORF2"
CDS 5082..6710
/gene="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="ATD10760.2"
/translation="MKMASNDAAPSNDGAASLVPEAINETMPLEPVAGASIAAPVAGQ
TNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAIPPNFPVDMISPAQITMLPHLIVDVRTLEPIMIPLPD
VRNVFYHFNNQPQPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFIYLVPP
SVESKTKPFTLPILTISELTNSRFPIPIEQLYTAPNENNVVQCQNGRCTLDGELQGTT
QLLSSAVCSYRGRTVANHGDNWDQNLLQLTYPSGASYDPTDEVPAPLGTQDFSGILYG
VLTQDNVSEGTGEAKNAKGVYISTTSGKFTPKIGSIGLHSITENVHPNQQSRFTPVGV
AQNENTPFQQWVLPHYARALALNTNLAPAVAPTFPGEQLLFFRSRVPCVQGLRGQDAF
IDCLLPQEWVNHFYQEAAPSQADVALIRYVNPDTGRTLFEAKLHRSGFITVSHTGAYP
LVVPPNGHFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6710..7441
/gene="ORF3"
CDS 6710..7441
/gene="ORF3"
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="QCD16866.1"
/translation="MAGAFIAGLAGDMLTSAVGSLTSAGANAINQKLNFDYNKQLQNA
SFQHDKEMLQAQIDATKKLQSEMIAIKHGVLTAGGFSPADAARGAVNAPMTRVLDWSG
TRYYAPNSVQTTSYSGQFTPSPVHRAQVKPPSNSSQRTAAPSSIRSMSTQSTSLGSTS
SGGSSTASSSSRTADWVQQQRALSPYMQGALQTAYVTPPSSRASSMSSVSTVPKGVLD
SWTPVFNTRRQPLFAHLRKRGESQA"
3'UTR 7442..7506
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac cgttgccgtt gcttgcaaca gcaacaacga
61 caaggaaaaa tcttcaggtg aaggcttatt cacaaatatg tcttccacct taaagaaagc
121 cctcggggcc cggcccaaac agcctgcccc gagggacaac tcacaaaagc ccccaagacc
181 accaactccc gagttggtta agaggatacc ccctccccca cctaatggtg aagaagaaga
241 accagtcatt aggtatgagg ttaagaatgg aatctctggc ctgcccgagc tcacaacagt
301 ccctcaaccg gatgtggcca acacggcatt cagtgtccca ccgctgagct tgagagaaaa
361 cagggaggcc aaggaaccgc tgacaggggc aatattagag atgtgggatg gagagatata
421 ccactatggc ctgtacgtgg aaaaaggctt agtgttgggt gtgcacaaac cacctgcagc
481 tataagcatg gcaaaagtgg agctgacgcc gctgtcattg tattggcgtg tggtctacac
541 cccccaatac ctcatctccc ctgaaactct caggcggctc aacggagagg cattccctta
601 cactgccttt gacaacaact gctatgcctt ttgctgctgg gtattagacc tcaatgactc
661 atggcttaac aggaggatgg tgcaaagaac aacaggcttc ttcagacctt accaagagtg
721 gaacagaaaa cccctgccca ctatggatga ctccaaaatc aagaaggtgg caaacatatt
781 cctgtgttca ttatccacgt tgttcaccag acctataaaa gacctcatag gaaaaattaa
841 accattaaac atcttgaaca tcctggcaac gtgtgactgg acattcgccg gaatagtgga
901 gtctctgata ttacttgctg aactctttgg agttttctgg acacccccag atgtgtctgc
961 tatgatcgct cctttacttg gagactacga gttgcaaggg ccagaagacc ttgccgttga
1021 gctcgtgcct gtagtaatgg gagggattgg tttggtgttg ggattcacca aagagaaaat
1081 tggcaaaatg ttgtcctcag cagcatcaac gctcagggct tgtaaagatc ttggtgccta
1141 tggtttagag atactcaaat tggtcatgaa gtggttcttc ccaaagaaag aagaggccaa
1201 tgagctagcc atggtgagag ctatagagga tgctgtactg gatcttgagg caatagaaaa
1261 taatcacatg acaactctgt tgaaagacaa agacagccta gcaacctaca tgaaaacact
1321 agacatggag gaggaaaaag ccagaagatt gtccacaaag tctgcatccc ctgacatagt
1381 tgggacgatc aacgccctgc tggctcgaat agcagcggct aggtcattag tccacagggc
1441 caaggaggag ttatctagca ggataagacc agtggttgtt atgatatctg gcaaaccagg
1501 gataggcaaa actcatttgg ccagggaggt ggcaagaaag gtggcatcca ctctcacagg
1561 ggatcaaaga gtcgggctca taccgagaaa cggtgtggac cattgggatg catacaaagg
1621 tgagagagtc gtgctgtggg acgactatgg catgagcaac cccattcatg atgctctgcg
1681 catacaagaa ctggctgata cgtgtcccct taccttaaat tgtgacagaa ttgaaaataa
1741 gggaaaagtt tttgacagtg aagtcataat aatcacaaca aaccttgcca atccagctcc
1801 acttgattat gtcaactttg aggcctgttc caggagaatt gacttcctgg tgtacgccga
1861 tgcaccagaa gtagaaaagg caaaacgaga ctttcctggt caaccagata tgtggaagga
1921 cgccttcaag tcggactttt cacatatcaa gttgcaactt gcacctcagg gcggctttga
1981 caagaatggc aacaccccac atgggaaagg agtgatgaag accctcacca ccggttccct
2041 aatcgcccgt gcatcaggct tactgcatga gaggatggat gaatttgaac tccaaggccc
2101 cacagtcacc accttcaatt ttgaccggaa cagaatcgct gcattcagac aattggctgc
2161 agaaaacaag tatggattgg tggacaccat gagagttggc aatcaattaa aaggggtgaa
2221 aaccatggaa gaactcaaac aagcaatcaa gaatgtgatc atcaagaggt gccggatcat
2281 ctacggtggc tccacgtatg accttgaatc tgacggcaag ggcaaagttc tggtggaaaa
2341 ggtcaagaac acctctgtac agaccaacaa cgagttggct ggagccctgc atcacctcaa
2401 acatgcccga atcaggtact atgtcaaatg tgtgcaagaa gcagtctact ctattataca
2461 aatcgccggc gctgcgtttg tcaccacacg catagtacgc cgcatgaaca tacaagagct
2521 ttggtcgaag ccaccattag accaaaatga attagaggct aaggaagagg cccccaagtc
2581 agaagatgac gagttcatca tatcttctag ggacatcaag gaggaaggaa agaagggcaa
2641 aaacaaaact ggccgtggca agaaacatac tgcattctct agcaagggct tgagcgatga
2701 ggagtatgac gagtacaaga ggataagaga agagagaaat ggaaagtact ctatagagga
2761 gtaccttcaa gacagagaca ggtactatga ggaactcgcc atcgccaagg ccacggaaga
2821 agacttctgt gaggaggagg agatcaaaat ccgtcagcgg atcttccgtc ccaccaggaa
2881 gcaaaggaag gaagagaggg ccacactagg gctagtaact ggttcagaaa tcagaaaaag
2941 aaaccctgat gacttcaaac ctaaagggaa actgtgggcc gatgacaaca gaagtgttga
3001 ctacaatgag aaactggact tcgaggcccc cccaagcata tggtctagga ttgtgagttt
3061 tggttctggt tggggcttct gggtgtcacc aagcctgttc ataacatcaa ctcatgtaat
3121 ccctgcaggc ataacagagg catttggagt ccccatcaaa caaatccagg tccacaaatc
3181 aggtgagttt tgccggttta gattcccaaa accaattagg tcagatgtga caggaatgat
3241 cttggaagaa ggtgcgcctg agggcaccgt ggcaaccgtg ctcatcaaac gccctaccgg
3301 agagctcatg ccccttgcag ccagaatggg aacacacgca accatgaaaa ttcagggccg
3361 catggttggc ggacagatgg gtatgttgct cactggttca aatgctaaag gaatggattt
3421 gggaacaact cctggtgatt gtggctgtcc ctacatctac aaaaggggca atgactacat
3481 agtcattggg gtgcacacag cagcagcccg tggtggaaac accgtcatct gtgccacaca
3541 gggaagtgag ggtgaggcaa ctcttgaggg tggagatgac aaaggaacgt actgtggggc
3601 acccattcta ggccctgggg gggcaccaaa attgagcacc aaaaccaaat tttggaggtc
3661 atcgaacacg cctcttccac cagggacgta tgaacctgcc tacctcggtg gccgtgaccc
3721 gcgtgttaag ggtgggccct ccttgcagca ggtaatgaga gaccagttga agccattcac
3781 tgagcccagg ggtaaacctc caagaccaag tgtgttggaa gcagccaaac aaaccatcat
3841 caatgtcctc gaacaaaccc tggaccctcc acaaaaatgg acatacgcac aggcgtgtgc
3901 ttcacttgac aaaaccacct ccagcgggca tccctaccac gtccgaaaga atgaattctg
3961 gaatggtgag accttcactg aaaaattggc agaccaagca tcaaaagcaa acctaatgtt
4021 tgaggaaggg aaacacatga caccagtgta tacagcagcc ctcaaggatg agctggtcaa
4081 aactgacaaa atctatggaa agattaagaa gagactgctc tggggctctg acttgtccac
4141 catgatccgg tgcgccaggt cctttggtgg gctcatggat gagatgaaag cacactgcat
4201 atcactccca gtccgagttg gcatgaacat gaatgaagat ggtccaataa tatttgagaa
4261 gcactccaga tacaagtatc actatgatgc agattactcc cgctgggatt caacacaaca
4321 gagggcagta ttagcagcag ccttggaaat catggtcagg ttctctgcag agccacaatt
4381 ggcacaaata gtcgctgagg atctactggc ccccagtgtg gtagatgtag gagactttaa
4441 aatttcaata aatgaagggc tcccctctgg tgtaccatgc acttctcaat ggaattccat
4501 cgcacactgg ctgctaaccc tctgtgcctt gtctgaagtc accaaactgt cccctgacat
4561 tgtacaggca aattccatgt tctcatttta cggtgatgac gagattgtca gcaccgatat
4621 aaaattggat cctgaaaagt taaccaccaa attgaaggag tacggcctga aaccaactcg
4681 cccagacaaa accgagggac ccctgatcat cagtgaggat ttgaacggac tcactttcct
4741 ccggaggacg gtgactcgtg acccagctgg ctggtttgga aaattggacc aaagctcaat
4801 attgaggcag atgtactgga ctagaggacc aaatcatgaa gaccccaatg agacaatgat
4861 accccactct caaagaccca tacagctcat ggcactgctt ggtgaggcct cccttcacgg
4921 accctctttc tacagcaaaa ttagtaagtt ggtcataact gaactcaaag aaggtggaat
4981 ggacttttac gtgccaaggc aggaacccat gttcaggtgg atgaggtttt ctgacttgag
5041 cacgtgggag ggcgatcgca atctggctcc caattttgtg aatgaagatg gcgtcgaatg
5101 acgccgctcc atcgaacgat ggtgcagcta gtctcgtacc agaggccatt aatgagacta
5161 tgccattgga acccgttgct ggcgcatcta ttgctgcccc agtagcggga caaactaaca
5221 taattgaccc ctggataaga acaaattttg tgcaagcccc taatggagag tttacagtgt
5281 caccgagaaa ttcccctgga gagattctat taaatttaga gttaggacca gatttgaatc
5341 cttatttggc ccatctatca aggatgtaca atggatatgc tggaggtgtt gaggtgcaag
5401 tgcttcttgc tgggaacgcg ttcacagcag gaaagatatt atttgcagca atcccaccca
5461 actttcctgt agatatgatt agtccagctc aaattactat gctcccccat ttgattgtag
5521 atgttaggac attggaacct attatgatac ccttacctga tgttaggaat gtgttctatc
5581 attttaataa tcaaccccaa cctaggatga gattagtggc tatgctctat accccattga
5641 gatctaatgg ttcaggagat gatgtcttca ctgtgtcttg tagagtgtta actaggccaa
5701 cccctgactt tgaattcatt tacctagtgc ctccctctgt agagtccaaa actaaaccat
5761 tcacacttcc aatattgacc atttctgaac taaccaactc ccggtttccc atcccaattg
5821 agcaactgta cacggcccca aatgagaata atgttgtaca gtgtcaaaat gggaggtgca
5881 ccttggatgg agagcttcag ggcaccaccc agctgctgtc aagtgcagtt tgctcttaca
5941 ggggcaggac tgtggctaac catggggaca attgggacca gaatttgctc cagctgacct
6001 acccaagcgg tgcaagctat gaccccactg atgaagtacc agcacccttg ggcacccagg
6061 atttcagtgg gatattgtat ggggtgttga cccaagacaa tgtaagtgag ggtacagggg
6121 aggccaaaaa tgctaaggga gtatacatat ccaccaccag tggaaaattc accccaaaaa
6181 ttgggtcaat tggattgcat tcaataactg aaaatgtgca ccccaatcag cagtcacggt
6241 tcacccccgt tggagttgct cagaatgaaa acaccccctt ccagcaatgg gttctaccac
6301 actacgcacg tgctctcgct ctaaacacca atttggcacc cgctgttgcc ccgactttcc
6361 ctggcgagca attactgttc ttcaggtccc gtgttccatg tgttcaaggt ctgcgggggc
6421 aggatgcttt catagattgt ctcctacctc aagagtgggt gaaccatttt tatcaagagg
6481 ctgctccctc ccaagcagac gttgccctca tcaggtatgt caaccctgat actggtcgca
6541 cgctgtttga ggccaaattg cacaggtcag gtttcattac tgtatcacac actggtgcct
6601 accctcttgt ggtcccccca aatggtcatt tcaggtttga ttcttgggtt aatcaattct
6661 actcactcgc ccccatggga actggcaatg ggcgtagaag agttcaataa tggcaggagc
6721 atttatagct ggtctagccg gtgacatgct gacttctgct gttggttcac tgacctctgc
6781 aggagccaat gccatcaatc agaaactgaa ttttgattac aataaacaac tccaaaatgc
6841 atcctttcaa catgataagg aaatgttgca ggcccaaatt gatgctacaa agaagctcca
6901 atcagaaatg attgcaatta agcatggggt tttgaccgcg ggcggctttt ccccagctga
6961 tgcagccaga ggggcagtca acgccccaat gactcgagtg ttggattggt cagggacacg
7021 ctactacgct ccaaattctg tgcaaaccac cagttattct gggcaattca ccccctcgcc
7081 agtccatcgg gcgcaggtga agcccccttc caattcatcc cagcggactg cagctccaag
7141 cagtatccgc agcatgtcaa cccaatcaac ttctttaggc tccacctcct caggggggtc
7201 ctctacagcc tcctctagtt cgagaacagc agactgggtg caacaacaaa gggctcttag
7261 cccgtacatg caaggagccc tgcagacggc atacgtcaca ccgccgtcta gtagggcctc
7321 cagcatgagc tctgtctcaa cagtgcccaa aggggttttg gactcctgga cacctgtgtt
7381 caacacacgc aggcagccgc tgtttgcaca cctcaggaag aggggggagt cacaggctta
7441 gtgaaaagga taatcaactt ttaaatgtga ttttattttc cttttaaaaa aaaaaaaaaa
7501 aaaaaa
//