Typing tool
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Typing tool
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Complete norovirus genomes
| KY210919 | GII.3 | |
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| GII.P21 |
ORF1: 1..2070
ORF2: 2051..3697
ORF3: 3697..4438
LOCUS KY210919 4438 bp RNA linear VRL 16-APR-2020
DEFINITION Norovirus GII strain Hu/GII.P21-GII.3/RUS/Novosibirsk/NS16-C32/2016
nonstructural polyprotein (ORF1) gene, partial cds; major capsid
protein VP1 (ORF2) gene, complete cds; and minor capsid protein VP2
(ORF3) gene, partial cds.
ACCESSION KY210919
VERSION KY210919.3
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 4438)
AUTHORS Zhirakovskaia,E.V., Tikunov,A.Y., Sokolov,S.N., Kravchuk,B.I.,
Krasnova,E.I. and Tikunova,N.V.
TITLE Characterization of the complete genome sequence of the recombinant
norovirus GII.P16/GII.4_Sydney_2012 revealed in Russia
JOURNAL Vavilovskii Zhurnal Genet Selektsii 24 (1), 69-79 (2020)
REFERENCE 2 (bases 1 to 4438)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2016) Siberian Branch of the Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine
(ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia
REFERENCE 3 (bases 1 to 4438)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (02-FEB-2018) Siberian Branch of the Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine
(ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia
REMARK Sequence update by submitter
COMMENT On Jun 26, 2019 this sequence version replaced KY210919.2.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4438
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.P21-GII.3/RUS/Novosibirsk/NS16-C32/2016"
/isolation_source="feces"
/host="Homo sapiens; sex: F; age: 7 months"
/db_xref="taxon:122929"
/country="Russia: Novosibirsk"
/collection_date="26-Apr-2016"
/note="genotype: GII.P21/GII.3"
gene <1..2070
/gene="ORF1"
CDS <1..2070
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="ATD10757.2"
/translation="PSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGAQEFFGVSIKQ
IQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTGELMPLAARMGTH
ATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAAR
GGNTVICATQGNEGEAMLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRSSTTPLPPG
TYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPSVLEAAKKTIINVLEQT
IDPPQKWTYAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGK
NMTPVYTGALKDELVKTDKIYGVVKKRLLWGSDLSTMIRCARAFGGLMDELKAHCVTL
PVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHL
AQVVAEDLLSPSVMDVGDFRISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSP
DIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLIISEDLNG
LTFLRRTVTRDPAGWFGKLDQSSILRQMYWTKGPNHEDPFETMIPHSQRPIQLMSLLG
EAALHGPSFYSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSL
VNEDGVE"
mat_peptide 1..537
/gene="ORF1"
/product="3C-like protease"
mat_peptide 538..2067
/gene="ORF1"
/product="RNA-dependent RNA polymerase"
gene 2051..3697
/gene="ORF2"
CDS 2051..3697
/gene="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="ATD10758.2"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEILLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFSIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDATTRAHEAKIDTTSGRFTPKLGSLEISTESSDFDQSQP
TRFTPVGIGVDHEADFQQWTLPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSYLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 3697..>4438
/gene="ORF3"
CDS 3697..>4438
/gene="ORF3"
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="AUX81640.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQTIDFENNKYLQNA
SFNHDKEMLNAQIEATKKLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTHQTVHRSTPNFKTNQAPKSTPSSGSSVRSNSTQITSLSS
HSSGSSRSSGSTVISSIPSSNRTKDWVNQQNLNLEPHMPGSLRTAFVTPPSSIASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLR"
ORIGIN
1 ccaagcattt ggtcacgaat agtcaacttt ggctcagggt ggggcttttg ggtctcgccc
61 agcctcttca taacatcaac ccatgtcatt ccccaaggcg cgcaggagtt ctttggagtg
121 tccatcaaac aaatacaaat tcacaagtca ggtgagttct gccggctcag gttcccgaaa
181 ccaatcagga cagatgttac aggcatgatc ttggaggaag gtgctccaga aggcactgtt
241 gccacacttc tcatcaagag accaactggg gagctcatgc ccttggcagc caggatgggc
301 acccacgcta ccatgaaaat tcagggtcgc actgttggtg gacagatggg catgctactc
361 acagggtcta acgctaagag catggacttg ggcacaactc ctggcgattg tggttgtccc
421 tatatctaca agagagggaa cgactacgtg gtcattggag ttcacactgc cgccgctcgt
481 ggaggaaaca ccgtcatctg tgcaacccaa ggaaacgagg gtgaggccat gctagaaggt
541 ggtgataata agggaactta ttgtggagca ccaatattag gccctggaaa tgcccccaaa
601 ctcagcacca aaaccaaatt ctggaggtct tccaccaccc ccctgccacc cggaacctat
661 gagccagctt acctgggtgg caaggaccct agagtgaaag gtggcccctc actgcaacag
721 gtcatgagag accaactaaa accattcact gagcccagag gcaaaccacc caacccaagt
781 gtgctagaag ctgccaagaa gactataatc aatgtgcttg aacaaacaat agacccacct
841 caaaaatgga catacgcaca agcgtgtgca tcactagaca agaccacttc cagcggtcac
901 cctcaccaca tgcggaagaa cgattgctgg aatggggaat ctttcacagg aaaactggca
961 gaccaagcat caaaggccaa cctaatgttt gaggaaggaa agaacatgac tccagtatac
1021 acaggagctc tgaaagatga gctagtcaag actgacaaga tttatggggt agtcaagaag
1081 aggctcctgt ggggttcaga cctatcaacc atgatacggt gtgcacgagc cttcggtggg
1141 ctaatggatg agctcaaggc ccattgcgtc acactaccag ttagggttgg tatgaacatg
1201 aatgaggatg gacccataat atttgagaaa cactccagat acaaatacca ttatgatgca
1261 gattactccc gctgggactc aacacaacaa agagcagtgc tagccgcagc cctggaaata
1321 atggtcaaat tctcaccaga accccatctg gcccaagtgg ttgcagaaga ccttttgtct
1381 cccagtgtga tggatgtggg tgatttcagg atatcaatca acgagggatt accctctggt
1441 gttccttgca cttcacaatg gaactctatt gctcactggc tcctcacact gtgtgcactg
1501 tctgaagtca cagacctgtc ccctgacatc atccaggcga attccctgtt ctccttttat
1561 ggtgatgatg aaatagtgag cacagacatc aaattagacc cagagaaatt gacagcaaag
1621 ctgagggaat acgggcttaa accaacccgc cctgacaaaa cagagggacc cttaattatc
1681 tctgaagatt tgaatggcct gaccttcttg cggagaacag tgacccgcga cccggccgga
1741 tggtttggca aactggacca aagttcaata ctcaggcaga tgtactggac caaggggcca
1801 aaccatgaag acccctttga aacaatgata ccacactccc aaaggcctat acaactgatg
1861 tcattacttg gtgaagctgc attgcatggt ccatcattct acagtaaaat cagcaaattg
1921 gtcatctcag aactgaaaga gggtggaatg gatttttacg tgcccagaca agaaccaatg
1981 ttcaggtgga tgagattctc agatttgagc acgtgggagg gcgatcgcaa tctggctccc
2041 agtcttgtga atgaagatgg cgtcgaatga cgccgctcca tctaatgatg gtgccgccgg
2101 cctcgtccca gagatcaaca atgaggcaat ggcgctagag ccagtggcgg gtgcagcgat
2161 agcagcaccc ctcactggtc agcaaaatat aattgatccc tggattatga ataattttgt
2221 gcaagcacct ggtggtgagt ttacagtgtc ccccagaaat tcccctggtg aaatccttct
2281 taatttggaa ctgggcccag aaataaatcc ctatttggcc catcttgcta gaatgtacaa
2341 tggttatgca ggtggatttg aagtgcaggt ggtcctagct ggaaatgcgt ttacagcagg
2401 gaagataatc tttgcagcta ttccccccaa tttttcaatt gataatttaa gtgcagcaca
2461 gatcacaatg tgcccacatg taattgtgga tgtcagacag ttggaaccag tcaacctccc
2521 gatgcctgac gttcgcaaca acttcttcca ttataatcaa gggtctgatt cgaggttacg
2581 cctaattgca atgctatata cacctcttag ggcaaataat tctggggatg atgtttttac
2641 tgtgtcttgt agagtgctaa ctagacctag tcctgatttc tcattcaatt ttcttgtgcc
2701 acctactgtg gagtcaaaga caaaaccctt ttctctccct atcctgacta tctctgaaat
2761 gtccaattct agattcccag taccaattga ttctctgcat accagtccta ctgagaacat
2821 tgttgttcag tgccaaaatg ggcgcgtcac ccttgatggt gagttgatgg gcaccaccca
2881 actcttgcct agccaaatct gtgctttcag gggcgtcctc accagatcaa caagcagggc
2941 cagtgaccag gccgatacag caacccctag gttgtttaat tattattggc atatacaatt
3001 ggacaatcta aatggaaccc cttatgatcc tgcagaagac ataccaggcc ccctagggac
3061 accagatttc cgtggcaaag tctttggcgt ggccagccag agaaatcctg atgccacgac
3121 tagggcacat gaagcaaaga tagataccac atctggccgt tttaccccaa agctaggctc
3181 attagagata tccactgaat ctagtgattt tgatcaaagc caaccgacaa gattcacccc
3241 ggttggcatt ggagttgacc atgaggcaga ctttcaacaa tggaccctac ccgactacgc
3301 tggtcagttc acacacaaca tgaacttagc cccagctgtt gctcctaatt ttcctggtga
3361 gcagctcctt ttcttccgct catatttgcc atcttctggt gggcggtcca acgggattct
3421 agactgcctg gtcccccaag aatgggtaca gcacttctac caagagtcag ccccctctca
3481 gactcaagtg gccctggtta ggtatgtcaa tcctgacact ggtagagtgt tatttgaggc
3541 caagctacac aaattaggtt tcatgactat agccaagaat ggtgattctc caataactgt
3601 ccctccaaat ggatacttta ggtttgaatc ttgggtgaac cccttttaca cacttgcccc
3661 catgggaact gggaatgggc gtagaaggat tcaataatgg ctggagcttt tatagcagga
3721 ttggctggtg acatgctcac aaatactgta ggatctttag ttaatgcagg agctaatgct
3781 atcaatcaaa caattgattt tgaaaataat aaatatttac aaaatgcttc ttttaatcat
3841 gataaggaga tgttgaatgc acaaattgag gcaacaaaga agttacaggc tgacatgatt
3901 gctatcaagc aaggggtctt gaccgctggc ggcttctccc ctactgatgc agcccgtggg
3961 gcaatcaatg cccccatgac aaaagtccta gattggaatg gaacgagata ctgggcacca
4021 ggtgccacct ccacaacctc gatgtcgggt ggctttacac atcaaactgt gcacagatcc
4081 acaccaaatt ttaaaacgaa ccaggctccc aaatccacac ccagcagcgg gtcttcagtg
4141 aggtcaaact caacccaaat cactagcctg agctcacact cgtccgggtc gtctcggtcc
4201 agcgggtcta cggttatcag ctcaatacca tcctctaaca ggactaagga ctgggtcaac
4261 caacaaaatc ttaatttgga accacatatg cctggatctc ttaggacagc ttttgtcact
4321 ccaccatcta gtatagcctc tagctcaggc acagtctcaa ctgtgcccaa aaatgttttg
4381 gactcctgga catctgcgtt taacacacgc agacagccgc tattcgcaca ccttcgca
//