Typing tool
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Typing tool
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Complete norovirus genomes
| KY210918 | GII.3 | |
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| GII.P21 |
ORF1: 1..2070
ORF2: 2051..3697
ORF3: 3697..4461
LOCUS KY210918 4536 bp RNA linear VRL 16-APR-2020
DEFINITION Norovirus GII strain
Hu/GII.P21-GII.3/RUS/Novosibirsk/NS16-A294/2016 nonstructural
polyprotein (ORF1) gene, partial cds; and major capsid protein VP1
(ORF2) and minor capsid protein VP2 (ORF3) genes, complete cds.
ACCESSION KY210918
VERSION KY210918.3
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 4536)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Molecular epidemiology of norovirus associated with sporadic
gastroenteritis in Russia
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4536)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2016) Siberian Branch of the Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine
(ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia
REFERENCE 3 (bases 1 to 4536)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (02-FEB-2018) Siberian Branch of the Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine
(ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia
REMARK Sequence update by submitter
COMMENT On May 9, 2019 this sequence version replaced KY210918.2.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4536
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.P21-GII.3/RUS/Novosibirsk/NS16-A294/2016"
/isolation_source="feces"
/host="Homo sapiens; sex: F; age: 30Y"
/db_xref="taxon:122929"
/country="Russia: Novosibirsk"
/collection_date="15-Apr-2016"
/note="genotype: GII.P21/GII.3"
gene <1..2070
/gene="ORF1"
CDS <1..2070
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="ATD10755.2"
/translation="PSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGAQEFFGVPTKQ
IQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLLIKRPTGELMPLAARMGTH
ATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAAR
GGNTVICATQGNEGEAMLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRSSTTPLPPG
TYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGRPPKPSVLEAAKKTIINVLEQT
IDPPQKWTYAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGK
NMTPVYTGALKDELVKTDKIYGVVKKRLLWGSDLSTMIRCARAFGGLMDELKAHCVTL
PVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHL
AQVVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSP
DIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGSLIISEDLNG
LTFLRRTVTRDPAGWFGKLDQSSILRQMYWTKGPNHEDPFETMIPHSQRPIQLMSLLG
EAALHGPSFYSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSF
VNEDGVE"
mat_peptide <1..537
/gene="ORF1"
/product="3C-like protease"
mat_peptide 538..2067
/gene="ORF1"
/product="RNA-dependent RNA polymerase"
gene 2051..3697
/gene="ORF2"
CDS 2051..3697
/gene="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="ATD10756.2"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGTDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QILPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDATTRAHEAKIDTTSGRFTPKLGSLEISTESSDFDQNQP
TRFTPVGIGVDHEADFQQWTLPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSHLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQSQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 3697..4461
/gene="ORF3"
CDS 3697..4461
/gene="ORF3"
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="QCO84584.1"
/translation="MAGAFIAGLAGDMFTNTVGSLVNAGANVINQTIDFENNKYLQNA
SFNHDKEMLNAQIEATKKLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTHQTVHRSTPNFKTNQAPKSTPSSGSSVRSNSTQITSLSS
HSSGSSRSSGSTVISSIPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPPSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
3'UTR 4462..4515
ORIGIN
1 ccaagcattt ggtcacgaat agtcaacttc ggctcagggt ggggcttttg ggtctcgccc
61 agcctcttca taacatcaac ccatgtcatt ccccaaggcg cgcaggagtt ctttggagtg
121 cccaccaaac aaatacaaat tcacaagtca ggtgagttct gccggcttag gttcccaaaa
181 ccaatcagga cagatgttac aggtatgatc ttggaggagg gtgctccaga aggcactgtt
241 gtcacacttc tcatcaagag accaactggg gaactcatgc ccctggcagc caggatgggc
301 acccacgcta ccatgaaaat tcagggtcgc actgttggtg gacagatggg catgctactc
361 acagggtcta acgccaagag catggatttg ggcacaactc ctggcgattg tggttgtccc
421 tacatctaca agagagggaa cgactacgtg gtcattggag ttcacactgc cgccgctcgt
481 ggaggaaaca ccgtcatctg tgcaacccaa ggaaacgagg gtgaggccat gctagaaggt
541 ggtgacaaca agggaactta ttgtggagca ccaatattag gccctggaaa tgcccccaaa
601 ctcagcacca aaaccaaatt ctggaggtct tccaccaccc ccctgccacc cggaacctat
661 gagccagctt atctgggtgg caaggaccct agagtgaaag gtggcccctc actgcaacag
721 gttatgagag accaactaaa accattcact gagcccagag gcagaccacc caaaccaagt
781 gtgctagaag ctgccaagaa gactataatc aatgtgcttg aacaaacaat agacccacct
841 caaaaatgga catacgcaca agcgtgtgca tcactagaca agaccacttc cagcggtcac
901 cctcaccaca tgcggaaaaa cgattgctgg aatggggaat ctttcacagg aaaactggca
961 gaccaagcat caaaggccaa cctaatgttt gaggaaggga agaacatgac tccggtatac
1021 acaggagctc tgaaagatga gctagtcaag actgacaaaa tctatggggt agtcaagaag
1081 aggctcctgt ggggctcaga cctatcaacc atgatacggt gtgcacgagc cttcggtggg
1141 ctaatggacg agctcaaggc ccattgcgtc acactaccag tcagggttgg tatgaacatg
1201 aatgaggatg gacccataat atttgagaaa cactccagat acaaatacca ttatgatgca
1261 gattactccc gctgggactc aacacaacaa agagcagtgc tagccgcagc cctggaaata
1321 atggtcaaat tctcgccaga accccacctg gcccaagtgg ttgcagaaga ccttttgtcc
1381 cccagtgtga tggatgtggg tgatttcaag atatcaatca acgagggatt accctctggt
1441 gttccttgta cttcacaatg gaattccatt gctcactggc tcctcacact atgtgcactg
1501 tctgaagtca cagacctgtc ccctgacatc atccaggcga attccctgtt ctccttttat
1561 ggtgatgatg aaatagtgag cacagatatc aaattagacc cagagaaatt gacagcaaag
1621 ctgagggaat acgggcttaa accaacccgc cctgacaaaa cagagggatc cttaattatc
1681 tctgaagatt tgaatggcct gaccttcttg cggagaacag tgacccgcga cccggccgga
1741 tggtttggca aactggacca gagttcaata ctcaggcaga tgtactggac caaggggcca
1801 aaccatgaag atccctttga aacaatgata ccacactccc aaagacccat acaactgatg
1861 tcactacttg gtgaagctgc attacatggt ccatcatttt acagtaaaat cagcaaattg
1921 gtcatctcag aactgaaaga gggtggaatg gatttttacg tgcccagaca agaaccaatg
1981 ttcaggtgga tgagattctc agatttgagc acgtgggagg gcgatcgcaa tctggctccc
2041 agttttgtga atgaagatgg cgtcgaatga cgccgctcca tctaatgatg gtgccgccgg
2101 cctcgtccca gagatcaaca atgaggcaat ggcgctagag ccagtggcgg gtgcagcgat
2161 agcagcgccc ctcactggtc agcaaaatat aattgatccc tggattatga ataactttgt
2221 gcaagcacct ggtggtgagt ttacagtgtc ccccagaaat tcccctggtg aagtcctcct
2281 taatttggaa ctgggcccag aaataaaccc ctatttggcc catcttgcta gaatgtataa
2341 tggttatgca ggtggatttg aagtgcaggt ggtcctagct ggaaatgcgt ttacagcagg
2401 aaagataatc tttgcagcta ttccccctaa ttttccaatt gataatttaa gcgcagcaca
2461 gatcacaatg tgcccacatg tgattgtgga tgtcagacag ttggaaccag tcaacctccc
2521 gatgcctgac gttcgtaata acttctttca ttataatcaa gggactgatt cgaggttacg
2581 cctagtggca atgctataca cacctcttag ggcaaacaat tctggggatg atgtttttac
2641 tgtgtcttgt agagtgctaa ctagacctag tcctgatttc tcattcaatt tccttgtgcc
2701 acctactgtg gagtcaaaga caaaaccctt ttccctccct atcctgacta tctctgaaat
2761 gtccaattct agattcccag taccaattga ttctctgcac accagtccta ctgagaatat
2821 tgttgttcag tgccaaaatg ggcgcgtcac ccttgatggt gagttgatgg gcaccaccca
2881 aatcttgcct agccaaatct gtgcttttag gggcgttctc accagatcaa caagcagggc
2941 cagtgaccag gccgatacag caacccctag attgtttaat tattattggc atatacaatt
3001 ggataatcta aatggaaccc cttatgatcc tgcagaagac ataccaggcc ccctagggac
3061 accagatttt cgtggcaaag tctttggcgt ggctagccag agaaatcctg atgccacgac
3121 tagggcacat gaagcaaaaa tagacaccac atctggccgc ttcaccccaa agctaggctc
3181 attagagata tccactgaat ctagtgattt tgatcaaaat caaccaacaa gattcacccc
3241 agttggcatt ggagttgacc atgaggcaga ctttcaacaa tggaccctac ccgactacgc
3301 tggtcagttt acacacaaca tgaacttagc cccagctgtt gctcccaact tccctggtga
3361 gcagctcctt ttcttccgct cacatttacc atcttctggt gggcgatcca acgggattct
3421 agactgcctg gtcccccaag aatgggtgca gcacttctac caagaatcag ccccctctca
3481 gtctcaagtg gccctggtta ggtatgttaa ccctgacact ggcagagtgt tatttgaggc
3541 caagttacac aaattaggtt tcatgactat agccaagaat ggtgattctc caataactgt
3601 ccctccaaat ggatacttta ggtttgaatc ttgggtgaac cccttttata cacttgcccc
3661 catgggaact gggaatgggc gtagaagggt tcaataatgg ctggagcttt tatagcagga
3721 ttggctggtg atatgttcac aaatactgta ggatctttag ttaatgcagg agctaatgtt
3781 attaatcaaa caattgattt tgaaaataat aaatatttgc aaaatgcttc ttttaatcat
3841 gataaggaga tgttgaatgc acaaattgag gcaacaaaga agttacaggc tgacatgatt
3901 gctatcaagc aaggggtctt gaccgctggc ggcttctccc ctactgatgc agcccgtggg
3961 gcaattaatg cccccatgac aaaagttcta gattggaatg gaacaagata ctgggcacca
4021 ggtgccacct ccacaacctc catgtcgggt ggctttacac atcaaactgt gcacagatcc
4081 acaccaaatt ttaaaacgaa ccaggctccc aaatctacac ccagcagtgg gtcttcagtg
4141 aggtcaaact caacccaaat cactagcctg agctcacact cgtccgggtc gtctcgatcc
4201 agcgggtcta cagttatcag ctcaatacca tcctctaaca ggactaggga ctgggtcaac
4261 caacaaaatt ttaatttgga accacacatg cctggatctc ttaggacagc ttttgtcact
4321 ccaccaccta gtacagcctc tagctcaggc acagtctcaa ctgtgcccaa aaatgttttg
4381 gactcctgga catctgcgtt taacacgcgc agacagccgc tattcgcaca ccttcgcaga
4441 aggggggagt caaatgttta gtgaaaagat tattttaaaa tttggtttaa aattaggttt
4501 aatttggaat cttttaaaaa aaaaaaaaaa aaaaaa
//