Typing tool
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Complete norovirus genomes
KY210910 | GI.6 | ||
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GI.P11 |
ORF1: 1..823 ORF2: 807..2429 ORF3: 2429..3058LOCUS KY210910 3077 bp RNA linear VRL 01-NOV-2017 DEFINITION Norovirus GI isolate Hu/GI.Pb-GI.6/RUS/Novosibirsk/NS16-A445/2016 RNA-dependent RNA polymerase (POL) gene, partial cds; and major capsid protein VP1 (VP1) and minor capsid protein VP2 (VP2) genes, complete cds. ACCESSION KY210910 VERSION KY210910.1 KEYWORDS . SOURCE Norovirus GI ORGANISM Norovirus GI Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3077) AUTHORS Zhirakovskaya,E. and Tikunova,N. TITLE Molecular epidemiology of norovirus associated with sporadic gastroenteritis in Russia JOURNAL Unpublished REFERENCE 2 (bases 1 to 3077) AUTHORS Zhirakovskaya,E. and Tikunova,N. TITLE Direct Submission JOURNAL Submitted (19-NOV-2016) Siberian Branch of the Russian Academy of Sciences, Institute of Chemical Biology and Fundamental Medicine (ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3077 /organism="Norovirus GI" /mol_type="genomic RNA" /isolate="Hu/GI.Pb-GI.6/RUS/Novosibirsk/NS16-A445/2016" /isolation_source="feces" /host="Homo sapiens; sex: F; age: 28 Y" /db_xref="taxon:122928" /country="Russia: Novosibirsk" /collection_date="13-Jul-2016" /note="genotype: GI.Pb/GI.6" gene <1..823 /gene="POL" CDS <1..823 /gene="POL" /note="ORF1" /codon_start=2 /product="RNA-dependent RNA polymerase" /protein_id="ATD10737.1" /translation="YHYDADYTAWDSTQNRQIMTESFSIMCRLTASPELASVVAQDLL APSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDVIQSMSYF SFYGDDEIVSTDIEFDPAKLTQVLKEYGLKPTRPDKSEGPIIVRKSVDGLVFLRRTIS RDAAGFQGRLDRASIERQIYWTRGPNHSDPFETLVPHQQRKIQLISLLGEASLHGEKF YRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV" gene 807..2429 /gene="VP1" CDS 807..2429 /gene="VP1" /note="ORF2" /codon_start=1 /product="major capsid protein VP1" /protein_id="ATD10738.1" /translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL PLEDVRNVLFHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPVQGMFMSPDVNQSVQFQNGRCQIDG QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFIPLESPAPVGFPDLGGCDWHV NFTFQAQNQDPSQSVTFATNDASFVPYLGSISPHNGEDFHAGDIIGSLGWISAPSDNS QLNVWTIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQSSQLQVPCLLPQE FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI" gene 2429..3058 /gene="VP2" CDS 2429..3058 /gene="VP2" /note="ORF3" /codon_start=1 /product="minor capsid protein VP2" /protein_id="ATD10739.1" /translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN SFKHDKEMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG TRIAAPTSSTTTLRSGGFMAVPIPLSSKTKQPVMSGQDNPNYAASSISRTASWVQSQN SMRSVSPFHSDALRTVWVTPPGSSSTSSVQSSFYGVFNTDRLPLFANRR" ORIGIN 1 atatcactat gatgcagatt atacggcttg ggactcaaca caaaataggc aaattatgac 61 tgaatcattc tcaatcatgt gtcggctaac tgcttctcca gaattggcct cagtggtggc 121 acaagatctt cttgcaccct cagaaatgga cgttggtgac tacgtcataa gagtgaagga 181 aggcctccca tctggcttcc catgcacatc acaggtcaat agcataaacc attggttgat 241 aacattgtgc gccctctctg aggtgactgg cctgtcacca gatgttatcc agtccatgtc 301 atacttctct ttctatggtg atgatgaaat agtttccact gacatagaat ttgacccagc 361 aaagctgaca caagtcctta aagagtatgg cctcaaaccc acccgccctg acaagagtga 421 aggtccaata attgtgagga agagtgtgga tggcctggtc ttcttacgtc gcaccatttc 481 ccgcgacgcc gcggggttcc aggggcgact ggaccgagca tccattgaaa ggcagatcta 541 ctggaccaga gggcccaatc actcagaccc ctttgaaacc ttggtgcccc accagcaaag 601 aaaaatccag ctgatatcac tgttaggtga ggcctcattg catggtgaga aattctacag 661 gaagatctca agcaaagtca tccaagagat taagacaggg ggtcttgaaa tgtatgtgcc 721 agggtggcaa gccatgttcc gctggatgcg gttccatgac cttggcctgt ggacaggaga 781 tcgcaatctc ctgcccgaat tcgtaaatga tgatggcgtc taaggacgcc ccaacatccc 841 ctgatggcgc cagtggcgcc ggccagctgg taccggaggc taatacagct gagcaaattt 901 caatggaccc tgttgcgggt gcttcaacag cagtcgcgac agctgggcaa gttaacatga 961 ttgacccatg gattttcaat aactttgtcc aggcacctca aggagaattc actatttccc 1021 ctaataatac ccccggtgat attttgtttg atttacaact aggaccccac cttaacccat 1081 ttctagccca tctctcacag atgtacaatg gttgggtcgg caatatgcgt gtgcgcatac 1141 tgttggccgg gaatgccttc acagctggaa agataatcat ttgctgcgtc ccccctggtt 1201 ttgatgccag aatactcaca atagctcaag caactctctt cccacactta attgctgatg 1261 taaggaccct tgagcctgtg gagcttcctt tggaggatgt gcgcaatgtt ctcttccaca 1321 acagtagcca accgcagcca acaatgcggc tggttgctat gttgtacact cccctccgca 1381 ctggtggtgg ttccggaggc actgatgcct ttgtggtggc gggtagggtg cttacgtgcc 1441 ccgcccccga ctttagtttt ctgtttctag tccccccttc cgttgaacaa aagaccagag 1501 ttttcagtgt ccccaatata cccctgaagg atctctcaaa ttcccgtgtc cctgtgccag 1561 tgcagggcat gtttatgtcc ccagatgtta atcagtcagt ccagtttcag aatggacgct 1621 gccaaattga tggccaactc caaggcacca ctccagtctc gctcagccaa ctctgcaaga 1681 ttaggggtaa aacttctagc aatgctaggg tgctcaactt aagtgaggta gatggcacac 1741 ccttcatccc acttgaatca ccagcgccag ttggttttcc cgacttggga ggttgtgatt 1801 ggcatgtaaa tttcactttc caggctcaaa atcaggaccc atctcaaagt gtaacctttg 1861 caactaatga tgccagcttt gtcccctatc taggtagtat ctctcctcac aatggggaag 1921 attttcatgc aggtgacatc ataggtagcc ttggttggat ttcagccccg tctgataatt 1981 cacaacttaa tgtttggaca ataccaaagt atggatctag tctcccagat gtcactcatc 2041 ttgcccctgc tgtgttcccc ccaggctttg gggaggtgat cttgtacttc tattctacct 2101 tcccaggttc tggacaatcc agccaacttc aagtcccatg cttgttgcct caggagttca 2161 tcacccactt ctgtaacgaa caggctccca tcgctgggga ggctgccctc ctccactacg 2221 tggaccctga tacggggcga aacttgggag aatttaaact ttaccctgat gggtttatga 2281 cctgtgtccc caatagtgtt agtagtggcc ctcaaaccct tcctatcaat ggagtctttg 2341 tctttgtttc atgggtatct agattctatc aactcaagcc tgtgggaacg gcctcagcgg 2401 ctagaaggct tggattgcgg cgcatataat ggcccaagct gtcatcggtg ccatagccgc 2461 atctgccgct ggtagcatac taggggcagg catacaggct ggtgctgagg ctggtctcca 2521 ggctcaacgg tatcagcagg atctgcagtt gcaacaaaat tctttcaagc atgataagga 2581 aatgttaggt taccaagttc aggctagtaa tgctctttta gctaagaatc ttaacactag 2641 atatgctctt ctgcaggcag ggggcctatc tagcgctgat gctgctcggg cagtggctgg 2701 tgctcctgtc acccgtatag tggactggaa tggcacgcgc attgcagcgc ccacttcaag 2761 caccactaca ctcagatctg gtggttttat ggctgtccct ataccattgt cttcaaagac 2821 caagcaacca gtgatgtctg ggcaggataa tccaaattat gctgcttctt ctatctctag 2881 aactgcttca tgggtgcaat ctcaaaattc tatgaggtct gtttctcctt ttcacagtga 2941 tgctttgagg accgtttggg ttacaccacc cggttcatca tcaacttcat ctgtgcaatc 3001 tagtttctat ggtgttttta atacagatag attgcctctg ttcgcaaaca gaaggtaata 3061 aaattttgta ataggat //