Typing tool
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Typing tool
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Complete norovirus genomes
| KY210909 | GI.6 | |
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| GI.P11 |
ORF1: 1..823
ORF2: 807..2429
ORF3: 2429..3058
LOCUS KY210909 3064 bp RNA linear VRL 01-NOV-2017
DEFINITION Norovirus GI isolate Hu/GI.Pb-GI.6/RUS/Novosibirsk/NS16-A48/2016
RNA-dependent RNA polymerase (POL) gene, partial cds; and major
capsid protein VP1 (VP1) and minor capsid protein VP2 (VP2) genes,
complete cds.
ACCESSION KY210909
VERSION KY210909.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3064)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Molecular epidemiology of norovirus associated with sporadic
gastroenteritis in Russia
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3064)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (19-NOV-2016) Siberian Branch of the Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine
(ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3064
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="Hu/GI.Pb-GI.6/RUS/Novosibirsk/NS16-A48/2016"
/isolation_source="feces"
/host="Homo sapiens; sex: F; age: 40 Y"
/db_xref="taxon:122928"
/country="Russia: Novosibirsk"
/collection_date="22-Jan-2016"
/note="patient with GII.Pe/GII.4_Sydney and GI.Pb/GI.6
coinfection;
genotype: GI.Pb/GI.6"
gene <1..823
/gene="POL"
CDS <1..823
/gene="POL"
/note="ORF1"
/codon_start=2
/product="RNA-dependent RNA polymerase"
/protein_id="ATD10734.1"
/translation="YHYDADYTAWDSTQNRQIMTESFSIMCRLTASPELASVVAQDLL
APSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDVIQSMSYF
SFYGDDEIVSTDIEFDPAKLTQVLKEYGLKPTRPDKSEGPIIVRKSVDGLVFLRRTIS
RDAAGFQGRLDRASIERQIYWTRGPNHSDPFETLVPHQQRKIQLISLLGEASLHGEKF
YRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
gene 807..2429
/gene="VP1"
CDS 807..2429
/gene="VP1"
/note="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="ATD10735.1"
/translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL
PLEDVRNVLFHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF
LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPVQGMFMSPDVNQSVQFQNGRCQIDG
QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFIPLESPAPVGFPDLGGCDWHV
NFTFQAQDQDPSQSVTFATNDASFVPYLGSISPHNGGDFHAGDIIGSLGWISAPSDNS
QLNVWTIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQSSQLQVPCLLPQE
FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN
GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI"
gene 2429..3058
/gene="VP2"
CDS 2429..3058
/gene="VP2"
/note="ORF3"
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="ATD10736.1"
/translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN
SFKHDKEMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG
TRIAAPTSSTTTLRSGGFMAVPIPLSSKTKQPVMSGQDNPNYAASSISRTASWVQSQN
SMRSVSPFHSDALRTVWVTPPGSTSTSSVQSSFYGVFNTDRLLLFANRR"
ORIGIN
1 atatcactat gatgcagatt atacggcttg ggactcaaca caaaataggc aaattatgac
61 tgaatcattc tcaatcatgt gtcggctaac tgcttctcca gaattggcct cagtggtggc
121 acaagatctg cttgcaccct cagaaatgga cgttggtgac tacgtcataa gagtgaagga
181 aggcctccca tccggctttc catgcacatc acaggtcaat agcataaacc attggttgat
241 aactttgtgt gccctctctg aggtgactgg cctgtcacca gatgttattc agtccatgtc
301 atacttttct ttctatggtg atgatgaaat agtttccact gacatagaat ttgacccagc
361 aaagctgaca caagtcctta aagagtatgg cctcaaaccc acccgccctg acaagagtga
421 aggtccaata attgtgagga agagtgtgga tggcctggtc ttcttacgtc gcaccatttc
481 ccgcgacgcc gcggggttcc aggggcgact ggaccgagca tccattgaaa ggcagatcta
541 ctggaccaga gggcccaatc actcagaccc ctttgaaacc ttggtgcccc accagcagag
601 aaaaatccag ctgatatcac tgttaggtga agcctcattg catggtgaaa aattctacag
661 gaagatctca agcaaagtca ttcaagagat taagacaggg ggtcttgaaa tgtatgtgcc
721 agggtggcaa gccatgttcc gctggatgcg gttccacgac cttggcctgt ggacaggaga
781 tcgcaatctc ctgcccgaat tcgtaaatga tgatggcgtc taaggacgcc ccaacatccc
841 ctgatggcgc cagtggcgcc ggccagctgg taccggaggc taatacagct gagcaaattt
901 caatggaccc tgtcgcgggt gcttcaacag cagtcgcgac agctgggcaa gttaatatga
961 ttgacccatg gattttcaat aactttgtcc aggcacctca aggagaattc actatttccc
1021 ctaataatac ccccggtgac attttgtttg atttacaact aggaccccac cttaatccat
1081 ttctagccca tctctcacag atgtacaatg gttgggtcgg caatatgcgt gtgcgcatac
1141 tgttggccgg gaatgccttc acagctggaa agataatcat ttgctgtgtc ccccctggtt
1201 ttgatgctag aatactcaca atagctcaag caactctctt cccacactta attgccgatg
1261 taaggaccct tgagcctgtg gagcttccct tggaggatgt gcgcaatgtt ctcttccaca
1321 acagtagcca accgcagcca acaatgcggc tggttgctat gttgtacact cccctccgca
1381 ctggtggtgg ttccggaggc actgatgcct ttgtggtggc gggtagggta ctcacgtgcc
1441 ccgcccccga ctttagtttt ctgtttctgg tccccccttc cgttgaacaa aagaccagag
1501 ttttcagtgt ccccaatata cccctgaagg atctctcaaa ttcccgtgtc cctgtgcctg
1561 tacagggcat gtttatgtct ccagatgtta atcagtcagt ccagtttcag aatggacgct
1621 gccaaattga tggccaactc caaggcacca ctccagtctc gctcagccaa ctctgcaaga
1681 ttaggggtaa aacttctagt aatgctaggg tgctcaactt aagtgaggta gatggcacac
1741 ccttcatccc acttgaatca ccagcgccag ttggttttcc tgacttggga ggttgtgact
1801 ggcatgtaaa tttcactttc caggctcaag atcaggatcc atctcaaagt gtaacctttg
1861 caactaatga tgccagcttt gtcccctatc taggtagtat ctctcctcac aatgggggag
1921 attttcatgc aggtgacatc ataggtagcc ttggttggat ttcagccccg tctgacaatt
1981 cacaactcaa tgtttggaca ataccaaagt atggatctag tctcccagat gtcactcatc
2041 ttgcccctgc tgtgttcccc ccaggctttg gtgaggtgat cttgtacttc tactctacct
2101 tcccaggttc tggacaatcc agccaacttc aagtcccatg tttgttgcct caggagttca
2161 ttacccactt ctgtaacgaa caggctccca tcgctgggga ggctgccctc ctccactacg
2221 tggaccctga tacggggcga aacttgggag aatttaaact ttaccctgat gggtttatga
2281 cctgtgtccc caatagtgtt agtagtggcc ctcaaaccct tcctatcaat ggagtctttg
2341 tttttgtttc atgggtatct agattctatc aactcaagcc tgtgggaacg gcctcagcgg
2401 ctagaaggct tggattgcgg cgcatataat ggcccaagct gtcatcggtg ccatagccgc
2461 atctgccgct ggtagcatac taggggcagg catacaggct ggtgctgagg ctggtctcca
2521 ggctcaacgg tatcagcagg atctgcagtt gcaacaaaat tctttcaagc atgataagga
2581 aatgttaggc taccaagttc aggctagtaa tgctctttta gctaagaatc ttaacactag
2641 atatgccctt ctgcaggcag ggggcctatc tagtgctgat gctgctcggg cagtggctgg
2701 tgctcctgtc acccgtatag tggactggaa tggcacgcgc attgcagcgc ccacttcaag
2761 caccactaca ctcagatctg gtggttttat ggctgtccct ataccattgt cttcaaagac
2821 caagcaacca gtgatgtctg ggcaggataa cccaaattat gctgcttctt ctatctctag
2881 aactgcttca tgggtgcaat ctcaaaattc tatgaggtct gtttctcctt ttcacagtga
2941 tgctttgaga accgtttggg ttacaccacc cggttcaaca tcaacttcat ctgtgcaatc
3001 tagtttctat ggtgttttta atacagatag attgcttctg ttcgcaaaca gaaggtaata
3061 aaat
//