Typing tool
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Typing tool
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Complete norovirus genomes
| KX907731 | GI.9 | |
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| GI.P9 |
ORF1: 5..5398
ORF2: 5382..7034
ORF3: 7034..7681
LOCUS KX907731 7681 bp RNA linear VRL 07-NOV-2016
DEFINITION Norovirus Hu/USA/2016/GI.P9_GI.9/SC6350, partial genome.
ACCESSION KX907731
VERSION KX907731.1
KEYWORDS .
SOURCE Norovirus Hu/USA/2016/GI.P9_GI.9/SC6350
ORGANISM Norovirus Hu/USA/2016/GI.P9_GI.9/SC6350
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7681)
AUTHORS Collins,N., Aswath,K., Barclay,L. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (28-SEP-2016) NCIRD/DVD/GRVLB, CDC, 1600 Clifton Rd NE,
Atlanta, GA 30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 8
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7681
/organism="Norovirus Hu/USA/2016/GI.P9_GI.9/SC6350"
/mol_type="genomic RNA"
/strain="Hu/USA/2016/GI.P9_GI.9/SC6350"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1914546"
/geo_loc_name="USA"
/collection_date="26-Jan-2016"
/note="genotype: GI"
CDS 5..5398
/note="ORF1"
/codon_start=1
/product="polyprotein"
/protein_id="APA31981.1"
/translation="MMMASNDAIAVADVSKNNANTNNENIGSRLMAKLKERISSQRGE
NTTKIKSTEMALELIRRSQTPSPTRPELPPKGQRDRPPRTVSEVKRTLGWDAPAHKDY
GARPWCELTAEEKKEILDNNERLFDAGGVTPSDVPSTFERSETIESLDDSHAVRWSET
AGVDLGVDSLTTVTGPVWNMCPLPPIESRNNGPAAEPHIGDMIEFYEGHIFHYAIYFG
QGKTIGVHSPQAAFSIARITIHPMAAWWRVCYVPTERQRLSYDQLKELENEPWPYASI
TNNCYEFCCRVMSLDDTWLQRKLVTSGKFNHPTQEWSKDTPDFHQDSKLEMVRDAILS
AINGLVSQPFKNILAKIKPLNLMSLLSNCDWTFMGVVEMVVLMAELFDIFWTPPDISN
FIASLLPDFHLQGPEDLARDLVPLILGGIGLAIGFTRDKVTKVMKSAVDGLRSATQLG
QYGLEIFSIIKKYFFGGDQTEKTLKGIENAVIDMEVLSSTNVTQLVRDKKLAKTYMNI
LDNEEEKARKLSVRSADPHVVTTVNNLISRISMARSALAKAQAEMTSRARPVVIMMCG
PPGIGKTKAAEHLANRLAGEIRPGGKVGLVPRESIDHWDGYHGEEVLLWDDYGMSKIT
EDCNKLQAIADTAPFTLNCDRIENKGMQFVSDAIIITTNAPGPAPVDFVNLGPVCRRV
DFLVYCTAPEIEQTRRTHPGDTNAIKDLFKKDFSHLKMEIAPQGGFDNQGNTPFGKGA
MKPTTLNRLLIQATALTMERQDEFQMQGAVYNFDEDRIAAFTNLARANGLGLLSMAAL
GKKLRSVNSMEGLRNALKGYKISECDIIWNNRTYTIKGDGSSVSISEKQVTTTLQQQA
ISSVTLALTRLRAARALAYASCFQSAVVTILQMAGSAVVISRAVKRMFGTHTNQPTLE
GKPKEHNCRVHRAEREGHGPIGHDGVIERYGLCESDQDEGKDLVELPTASQEGKNKGK
NKKGRGRKNNYNAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEELAEVQ
AGGDGGMGETEAEIRYRVFYKSKSGMRKQRQEERRQLGLVSGTEIRKRKPIDWTPPKN
DWSEDTREVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSPTVFITTTHVIPPEAKEIF
GEKVSDIAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTIMIKRDSGELLPLA
VRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVCGV
HAAATKSGNTVVCAIQSGEGEATLEGGGQNKGHYAGHPILRYGNGPSLSTKTKFWKST
PQPLPPGTYEPAYLGGRDPRVEGGPSLQQVLRDQLKPFAEPRGRLPEPSLLEAAVETV
TNVLEQTMDTPIPWSYSDACMSLDKTTSSGFPHHKKKNDDWNGSTFVRELGDQAAHAN
NMYEMGKSMKPVYTAALKDELVKPEKVYTKVKKRLLWGADLGTVIRAARAFGPFCEAI
KPHVIKLPIKVGMNAIEDGPMIYAEHAKYKYHFDADYTAWDSTQNREIMLESFNIMCK
LTANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYTLCALS
EVTGLAPDVLQSQSYFSFYGDDEIVSTDVEFDPVKLTQVLKEYGLKPTRPDKSEGPII
VKQCVDGLVFLRRTISRDAAGYQGRLDRNSIERQLWWTRGPNHDDPFETLVPHQQRKI
QLISLLGEAALHGEKFYRKIANRVIQEVKEGGLELYVPGWQPMFRWMRFHDLSLWAGD
RNLLPDYVNDDGV"
CDS 5382..7034
/note="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="APA31982.1"
/translation="MMMASKDATSNMDGTSGAGQLVPENNNTSEPINMEPVAGAVTAA
ATAGQVNMIDPWIMNNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYN
GWVGNMKVRVVLAGNAFSAGKIIVCCIPPGFSAPNISIAQATMFPHVIADVRVLEPID
IPLDDVRNVLFHNNDNGNQTMRLLCMLYTPLRSGGTSSGTDPFVIAGRVLTCPTPDFN
FLFLVPPTVEQKTKQFSVPNLPLNVMSNSRVPSLLNAMVVSPDQAQVVQFQNGRCTLD
GQMLGTTTVSASCVARFRGKTFQAPDNRLGINLAEISGEPYHAFESPAPLGFPDFGDG
DWHVTATKVTPSQLEANDPVVMGNVQPYNPQFAPHLGTLVVENPTPDNVTTGTDLLFN
ITWLSNRANNRFNPWVIPNYGSTLTEAAQLAPSIFPPGFGETIVYFNSTFPAVGATTH
AAIPCLLPQEFVAHFVNEQAPIRGEAALLHYIDPDTHRNLGEFKIYPEGFVTCVPNVG
GTGPQSLPTNGIFVFVSWVSRYYQLKPVGTAGQARRLGFRRV"
CDS 7034..7681
/note="ORF3"
/codon_start=1
/product="hypothetical protein"
/protein_id="APA31983.1"
/translation="MAQAIFGAIAATAAGSAVSASIDAGTQAALQYQRYQQDLDLQSK
SFLHDERMLGLQVDASNALLQKNLSTRYNLLLSSGMSSSDAARMIAGAPPTKIVDWNG
VRVAAPRSSATTLRSGGFMPVASLSTTPKMKNDGAGIVNPNYAPSHSSMVSRTTQWVE
SQNSLRSLEPFHHGALQTAWVTPPGSSSTSTVSSVSTAPRYFNTERLPLFANLRK"
ORIGIN
1 gtgaatgatg atggcgtcta acgacgctat tgccgttgct gatgtcagca aaaacaatgc
61 taacaccaac aatgaaaata ttggctctcg ccttatggcg aagctgaagg agcgaataag
121 ctcccaacgt ggtgagaaca ccacaaaaat caagagcaca gaaatggcgc tcgaactaat
181 acgtaggtct caaacaccat cacctacacg cccagaactg ccaccaaaag ggcaacgtga
241 ccgccctcca aggacagtgt ccgaagtcaa acggacgtta ggttgggatg cccccgccca
301 taaggattat ggagctcgtc catggtgtga actaacagca gaagagaaga aagagattct
361 ggacaacaac gagcgtttat ttgatgctgg tggggtcaca ccctccgatg tgcctagcac
421 tttcgagagg agtgagacaa ttgagagttt ggatgacagc catgcagtta gatggagtga
481 aactgcagga gtggaccttg gcgtggattc cttgactacg gtcactggtc cagtttggaa
541 catgtgccct cttcccccga ttgagtcgcg caataatgga cctgcagccg aaccacacat
601 aggggacatg atcgagttct atgagggaca catttttcat tatgccatct actttggtca
661 aggaaaaacc ataggagtgc actctcctca agcagccttt tcaatagcac gcattaccat
721 acaccccatg gcagcatggt ggcgggtctg ctatgtgccc acagaacgtc agcgtctcag
781 ctatgaccaa ctaaaagagc ttgagaatga accatggcct tacgcctcca taaccaacaa
841 ctgctatgag ttttgctgcc gcgtgatgtc actcgatgac acatggttgc agcggaaact
901 ggtaacatca ggcaagttca atcaccctac ccaggagtgg tccaaggaca caccagactt
961 ccatcaagat tcaaaactgg aaatggtcag ggatgctatc ctatcggcaa taaatgggct
1021 ggtctcccag cccttcaaaa acatcctagc aaaaattaaa ccactgaatc tgatgtctct
1081 tttatcaaat tgtgactgga cctttatggg ggttgtggag atggtagtat tgatggctga
1141 attgtttgac atcttctgga ccccacctga catttccaac tttatagctt ctcttttgcc
1201 agatttccac ctacaagggc cagaggatct ggcaagggac ttggtcccgt tgatacttgg
1261 gggtattggc ctggccattg gttttaccag ggataaagtc acaaaggtaa tgaagagtgc
1321 tgttgatggt ttgcggtctg ctacacagct gggacagtat ggccttgaga tattttcaat
1381 tatcaagaag tatttctttg gaggagatca aactgagaag actctcaagg gcatagaaaa
1441 cgctgtgata gacatggaag tcctgtcaag caccaatgtg actcaactgg tgcgtgacaa
1501 gaaactggct aaaacatata tgaatatatt agacaatgag gaagaaaaag cacgaaagct
1561 ttcagtgcgc agtgctgacc cacatgtagt aacaacagtt aacaacctca tatcacgtat
1621 atccatggca agatctgccc ttgctaaggc ccaggcagaa atgaccagcc gtgctcgccc
1681 agtagttatc atgatgtgtg gaccaccagg cataggaaaa accaaggcag ccgagcacct
1741 tgcaaaccgg ctagccggtg aaataaggcc aggaggtaaa gtcggactgg tgcccaggga
1801 atccattgat cactgggatg ggtaccatgg ggaagaagtc ctattgtggg atgactatgg
1861 catgtccaag ataacagaag actgcaataa gctacaggcc atagctgaca cagccccttt
1921 cacactcaac tgtgacagaa tagagaacaa aggtatgcaa tttgtatcag atgcaatcat
1981 aataactaca aatgcccctg gaccagcccc agttgacttt gtcaatcttg gaccggtgtg
2041 ccggcgtgtg gactttctgg tgtattgcac tgcccctgaa atagagcaaa caagaaggac
2101 ccaccccggg gacacaaatg ctattaagga tctattcaag aaagacttct cacacctaaa
2161 aatggaaata gccccccaag ggggttttga taaccaaggc aacacacctt ttggaaaggg
2221 tgcaatgaag ccaaccacac ttaacaggct gcttatccag gccaccgcgt tgaccatgga
2281 gaggcaagat gagttccaga tgcagggggc cgtctacaac tttgatgagg accggatagc
2341 agctttcacc aatctagctc gtgccaatgg attgggcctc ttgagtatgg cggccctcgg
2401 gaagaaactg cggagtgtca acagcatgga gggacttcgt aatgccctta aagggtacaa
2461 aatttctgaa tgtgacatta tatggaacaa caggacctat accatcaaag gtgatgggtc
2521 aagtgtgagt atatcagaaa aacaagtgac caccacccta caacaacaag ctattagttc
2581 ggtaaccctg gcactcacca gattgcgcgc tgcccgtgca ttagcatatg catcctgctt
2641 ccagagtgcg gtggtcacta tcttgcagat ggcaggttct gcagtggtca ttagcagggc
2701 agttaaacgc atgtttggga cccacaccaa ccaaccaaca ctagagggaa aacccaaaga
2761 gcacaattgc agagtccacc gagctgaaag agaaggtcat ggccccatag gtcacgatgg
2821 tgttattgaa cgctacggcc tgtgtgaaag tgaccaggat gaaggaaagg atttagtaga
2881 actgccaacg gccagccaag agggcaagaa caaaggaaag aacaagaagg ggcgcggtcg
2941 caaaaataat tacaacgcct tctcgagacg tggcttgagt gatgaggagt atgaggagta
3001 taagaaagtt agagaggaga agggtggtaa ttacagtatc caggagtacc tagaagaccg
3061 gcagcgctat gaagaggagt tggcagaggt gcaggccggt ggtgatggcg ggatgggtga
3121 aacagaagct gagatccgct accgggtatt ctacaagtcc aaaagtggga tgcgaaagca
3181 acgccaggag gagcgccgac aacttgggct ggtttcaggc actgaaatca gaaaacgcaa
3241 acccatagat tggacccccc ctaaaaatga ttggtcagaa gacaccagag aagtcaatta
3301 tgatgaacac ataagctttg aagccccgcc ctctatatgg agcagggtag taaaatttgg
3361 tagtggatgg ggcttctggg ttagcccaac tgtgttcatc acaaccacac atgttatacc
3421 accagaagca aaggaaatat ttggagagaa agtctctgac atagcaatac atagggtcgg
3481 agagttcacc cagtttaggt tctcaaagaa aatgaggcca gatctcagtg gcatggtact
3541 ggaagagggg tgtcctgagg gcacggtttg caccatcatg ataaaaaggg actcaggtga
3601 gctgttgccc ttggcagttc gcatgggtgc tgtggcatcc atgaaaatac agggtaagct
3661 catgcatggc cagtctggta tgttgctgac aggggcaaat gcaaaaggaa tggatctagg
3721 taccatccct ggtgattgtg gggccccgta cgtgcacaag agggggaatg actgggttgt
3781 gtgtggcgtg catgcagccg caactaaatc aggaaacaca gttgtctgtg ccatacagtc
3841 aggtgagggg gaagccaccc tcgaaggagg tggacagaat aaagggcact acgcaggcca
3901 tccaattctc agatatggta atggcccttc cctctccacc aagacaaagt tctggaaatc
3961 aaccccacaa cccctcccgc ctggaaccta tgagccagct tatctcgggg gacgtgatcc
4021 cagagtcgaa ggtgggccat cactccaaca ggtcttacga gatcagctta aacccttcgc
4081 tgaacctcga ggtagattac cagaaccaag cctacttgaa gcggctgtgg aaacagtcac
4141 gaatgtgcta gaacagacta tggacactcc aataccgtgg agctacagtg atgcatgcat
4201 gtcccttgat aagaccacca gttctgggtt cccacaccac aaaaagaaaa atgatgactg
4261 gaatggcagc acatttgtgc gggagcttgg tgatcaggca gcacacgcca ataacatgta
4321 tgaaatgggg aagtccatga agccagtgta tactgctgca ctgaaggatg agctagtgaa
4381 gcctgagaaa gtgtatacaa aggttaaaaa gaggctactt tggggtgcag atctcggcac
4441 ggtcattcgc gctgctcgag cgtttggccc tttttgtgag gccataaaac cacatgttat
4501 aaaattgccc attaaggttg gcatgaatgc aattgaagat ggccccatga tatatgctga
4561 gcatgccaag tacaagtacc attttgatgc tgactacaca gcatgggact ccacccagaa
4621 tagagaaatc atgttagaat ccttcaacat catgtgcaaa ttaacggcta acccatcact
4681 cgctgccgtc gtggcacagg atttattgtc cccatcagaa atggacgttg gagactatgt
4741 gattagtgtc aaggatggtc taccttcagg gttcccgtgc acctcgcaag tgaacagcat
4801 aaaccactgg atctacaccc tatgtgccct ttcagaggta acaggtctgg cacctgatgt
4861 tctgcagtct caatcatatt tctcttttta tggagatgat gaaattgtgt caactgatgt
4921 ggaatttgac cctgtgaaac tcacccaggt acttaaagag tatggtttaa aacccacccg
4981 ccctgacaaa tcagaaggac ccatcatagt gaagcaatgt gtggatggtc tagttttcct
5041 aaggcgcact atatcgaggg atgctgcagg gtaccaaggg cgactggatc gcaactccat
5101 agaaagacaa ctttggtgga cccggggccc aaatcatgat gacccatttg aaactttggt
5161 gcctcatcag caaagaaaga tacaactgat ttccttgctt ggggaggctg cacttcacgg
5221 agaaaaattc tacagaaaga ttgccaacag agtgattcag gaagtcaaag aggggggcct
5281 tgagctttat gtgcccggct ggcagcccat gttccgctgg atgcggttcc atgatctgag
5341 cttgtgggca ggagatcgca atctcctccc cgattatgta aatgatgatg gcgtctaagg
5401 acgctacctc aaacatggat ggcaccagcg gagctggaca actggtgcca gagaataata
5461 acacctcaga accaatcaac atggaaccag tcgcgggcgc ggtcactgcc gcagctacgg
5521 ctggccaggt gaatatgatt gatccttgga taatgaataa ttatgtacaa gccccccagg
5581 gcgagttcac aatttcgccc aataatactc ctggtgatat attgtttgat cttcaattag
5641 gtccccatct aaaccccttt cttgcccatt tatcccaaat gtataatgga tgggttggta
5701 acatgaaagt cagggtggtg ttggctggca atgccttttc tgcgggaaag atcatagtgt
5761 gctgtatacc acctggattc tctgcaccaa acatatccat agcccaggca actatgttcc
5821 ctcatgttat tgctgatgtt cgggtcttgg agcccattga tattcccctt gatgatgtca
5881 ggaatgttct gtttcataat aatgataatg gtaatcagac tatgagattg ctgtgcatgt
5941 tgtatacacc actccgtagt ggaggcacgt ccagtggaac tgacccgttt gtgattgctg
6001 gtagggttct aacctgccct actccagatt ttaatttctt gttcttggtt cccccaaccg
6061 ttgagcaaaa gaccaaacag tttagtgtgc ctaaccttcc cctcaatgtt atgtctaatt
6121 ctagagttcc atcactccta aatgctatgg tggtgtcacc agatcaggcc caagtggtgc
6181 aatttcaaaa tggcaggtgc acccttgatg ggcaaatgtt gggcaccacc actgtatcag
6241 ctagctgtgt tgcaagattc agagggaaaa cttttcaagc ccctgacaac aggttaggta
6301 tcaatctggc tgaaattagt ggagaaccat accatgcatt tgaaagccct gcccccctag
6361 gtttccctga ctttggggat ggagattggc acgtcactgc aacaaaagtg accccctcac
6421 agcttgaggc taatgaccct gtggtcatgg ggaatgtcca accatataac ccacagtttg
6481 ctcctcacct gggcacccta gtcgtagaaa accctactcc agacaatgtg accaccggga
6541 ctgacttatt gttcaacata acctggcttt ccaatcgtgc caataatcgg tttaaccctt
6601 gggttatccc aaattatggt tcaactctta ctgaggcagc acagctggca ccttcaatat
6661 ttccccctgg ttttggtgaa actatagtgt atttcaattc cacttttcca gctgtggggg
6721 ccaccaccca tgcagctata ccctgtctgc ttccacaaga atttgttgcc cattttgtta
6781 atgaacaggc ccccatacgt ggagaggctg ctttgctcca ctacattgac cctgatactc
6841 accgtaatct tggtgagttc aaaatttatc cagagggctt tgtaacgtgt gttcctaatg
6901 tgggtggtac ggggccacaa tctctaccta ctaatggtat ctttgtcttt gtctcttggg
6961 tgtcaaggta ctatcaactc aagcctgtgg gaactgctgg tcaagcaagg cggcttggtt
7021 tcaggagagt ataatggctc aagcaatatt cggagccatt gcagctacag ctgcgggtag
7081 tgctgtcagt gctagcattg acgccggcac acaggctgca ctacaatacc agcgttatca
7141 acaggatctt gatctccaat ctaaatcttt cctccatgat gagcgtatgc ttggtttgca
7201 agtagatgct agtaatgctt tgttgcaaaa gaatctatct actaggtata atctattgct
7261 ttcttctggt atgtcctcct ctgatgctgc tcgcatgatt gctggcgcac caccaacaaa
7321 aatagttgat tggaatggag tccgggtggc agccccaagg tcctcagcta caactttacg
7381 ttctgggggc tttatgccgg ttgcttcact gtccacgact ccaaaaatga agaatgatgg
7441 tgcaggtata gtaaacccca attatgcacc tagccacagt tcaatggtct ctcgaaccac
7501 acaatgggtc gagagccaga actccctgag aagtctagaa ccattccacc acggagcctt
7561 gcagaccgca tgggtgaccc caccaggttc ttcttctacc tccacagtgt ctagtgtgtc
7621 aactgcacca agatatttta atactgaaag acttcctcta ttcgcaaatt tgaggaaatg
7681 a
//