Typing tool
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Typing tool
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Complete norovirus genomes
| KX907730 | GI.7 | |
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| GI.P7 |
ORF1: 4..5400
ORF2: 5384..7000
ORF3: 7000..7647
LOCUS KX907730 7647 bp RNA linear VRL 07-NOV-2016
DEFINITION Norovirus Hu/USA/2014/GI.P7_GI.7/GA5043, partial genome.
ACCESSION KX907730
VERSION KX907730.1
KEYWORDS .
SOURCE Norovirus Hu/USA/2014/GI.P7_GI.7/GA5043
ORGANISM Norovirus Hu/USA/2014/GI.P7_GI.7/GA5043
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7647)
AUTHORS Collins,N., Aswath,K., Barclay,L. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (28-SEP-2016) NCIRD/DVD/GRVLB, CDC, 1600 Clifton Rd NE,
Atlanta, GA 30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 8
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7647
/organism="Norovirus Hu/USA/2014/GI.P7_GI.7/GA5043"
/mol_type="genomic RNA"
/strain="Hu/USA/2014/GI.P7_GI.7/GA5043"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1914544"
/country="USA"
/collection_date="06-Feb-2014"
/note="genotype: GI"
CDS 4..5400
/note="ORF1"
/codon_start=1
/product="polyprotein"
/protein_id="APA31978.1"
/translation="MMMASNDAVAAADVSKQNANTNNENIGSRLMAKLKERISSQRGE
GTTKIKNTEMALDLIRRSQTPSPTRSDPPPKAQRDRPPRTVSEVKQALGWNGPASKDY
GARAWCDLTAEEKKEILDNNERLFDAGGVTPSTVPSTFERCETSERVDGCHPVKWSES
AGVDLGVDSLTTVTGPVWNMCPLPPIDSRNNGPASEPRIGDMIEFYEGHIFHYAIYLG
QGKTIGVHSPQAAFSIARITIHPMAAWWRVCYEPTDQQRLSYDQLKELENEPWPYASI
TNNCYEFCCRVMSLDDTWLQRKLVTSGRFNHPTQEWSKETPDFHQDSKLEIVRDAILS
AINGLVSQPFKNILSKIKPLNLLSLLSNCDWTFMGVVELVVLLAELFDIFWTPPDISN
FIASLLPDFHLQGPEDLARDLVPLILGGIGLAIGFTRDKITKVMKSAVDGLRSATQLG
QYGLEVFSIIKKYFFGGDQTEKTLKGIENAVIDMEVLSSTNVTQLVRDKKLAKTYMNI
LDNEEEKARKLSVRSADPHVVTTVNNLISRISMARSALAKAQAEMTNRARPVVIMMCG
PPGIGKTKAAEHLANRLASEIRPGGKVGLVPRESIDHWDGYHGEEVLLWDDYGMSKIT
EDCNKLQAIADTAPLTLNCDRIENKGMQFVSDAIIITTNAPGPAPVDFVNLGPVCRRV
DFLVYCTAPEIEQTRRAHPGDTNAIKNLFKPDFSHLKMEIAPQGGFDNQGNTPFGKGA
MKSTTLNRLLIQAVALTMERQDEFQMQGVVYNFDEDRVTAFTSLARVNGLGLLSMAAL
GKKLRSVNNMEGLRNALKGYKITECDIVWNNRTYTIKGDGSNVSVTEKQAAATLQQQA
ISSVTLALSRLRAARALAYASCLQSAVTTILQMAGSAVVISRAVKRMFGTHTNQPALE
GKPREHNCRAHRAEREGRGPIGHDGIIERYGLCETDQEEEEKIEMEVPTADKEGKNKG
KNKKGRGRKNNYNAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEELAEV
QAGGDGGIGETEAEIRHRVFYKSKSGMRKQRQEERRQLGLVTGTEIRKRKPIDWTPPK
NDWSEDTRQVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPEAKEI
FGEKLSDIAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTIMVKRDSGELLPL
AVRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVCG
VHAAATKSGNTVVCAIQSGEGEATLEGGGQNKGHYAGHPILRYGNGPSLSTKTKFWKS
TPQPLPPGTYEPAYLGGRDPRVDGGPSLQQVLRDQLKPFAEPRGRLPEPSLLEAAVET
VTNVLEQTMDTPVPWSYSDACMSLDKTTSSGYPHHKRKNEDWNGNAFVRELGEQAAHA
NNMYELGKSVKPVYTAALKDELVKPEKVYTKIKKRLLWGADLGTVIRAARAFGPFCEA
IKPHVIKLPIKVGMNAIEDGPLIYAEHAKYKYHFDADYTAWDSTQNREIMLESFNIMC
KLTANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYTLCAL
SEVTGLAPDVLQSQSYFSFYGDDEIVSTDVEFDPIKLTQVLREYGLKPTRPDKSEGPI
IVKQQIDGLVFLRRTISKDAAGYQGRLDRNSIERQLWWTRGPNHDDPFETLIPHQQRK
IQLISLLGEAALHGEKFYRKIANRVIQEVKEGGLELYIPGWQAMFRWMRFHDLSMWTG
DRNLLPDYVNDDGV"
CDS 5384..7000
/note="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="APA31979.1"
/translation="MMMASKDAPSNMDGTSGAGQLVPEVNAAEPLPLEPVVGAATAVA
TAGQVNMIDPWIMNNFVQAPEGEFTISPNNTPGDILFDLRLGPHLNPFLLHLSQMYNG
WVGNMRVRVMLAGNAFSAGKIIICCVPPGFESQNISIGQATMFPHVIADVRVLEPIEV
PLDDVRNVLFHTNENRPTMRLLCMLYTPLRAGGASSGTDPFVIAGRVLTCPAPDFNFL
FLVPPSVEQKTRQLTIPNIPLNNLANSRVPAMINKMTVSADQNQVVQFQNGRCTLEGQ
LLGTTPVSANQVARIRGKVFSTNSGTGLNLTEVDGTPYHAFESPAPLGFPDIGNCDWH
VYAFKVNQNTGDPMYRLDITQGNSFAPHLGSIEFSSENHPSGDQLGTLTWISPLNNAS
RVDPWKIPTYGSTLTESTNLAPPIFPPGFGEAIVYFMSDFPIVSGNTAQIPCTLPQEF
VSSFVEQQAPIRGEAALLHYVDPDTHRNLGEFKLYPDGFITCVPNTGGGPQNLPSNGV
FVFSSWVSRYYQLKPVGTTGPVRRLGVRRV"
CDS 7000..7647
/note="ORF3"
/codon_start=1
/product="hypothetical protein"
/protein_id="APA31980.1"
/translation="MAQAIIGAIAATAAGSAVGAGIQAGTEAALQYQRFQQDLTLQEN
SFKHDERMLGLQIEGSNALLQKNLSTRYNLLVGAGLSSADAARSIAGAPVTKIVDWNG
VRIAAPTSTATTLRSGNFMSIPTIPKKEPQKLSARSVGLSNPNYDSSTMISRTSQWVE
SQNSIRNLSPFHSSALRTTWVTPPGSTSTSTFSTVSSAPRYFNTERLPLFANNRK"
ORIGIN
1 tgaatgatga tggcgtctaa cgacgctgtt gccgctgctg atgtcagcaa acaaaatgct
61 aacactaaca acgaaaacat cggttctcgc cttatggcga aactgaaaga gcgtataagc
121 tctcaacgtg gtgaaggaac cacgaaaatc aagaacactg aaatggcact ggatctgata
181 cgtaggtccc aaacaccatc gccaacgcgc tcggaccccc ctcctaaggc acaacgcgac
241 cgccctccga ggactgtgtc agaagtcaag caagctttag gttggaatgg ccccgctagt
301 aaggattatg gggcccgagc atggtgtgac ttaacagctg aagaaaagaa ggagatcttg
361 gacaacaacg agcgcctctt tgacgctggc ggtgtgaccc cttcgacagt accgagcacc
421 tttgagagat gtgaaacatc tgaacgagtc gacggctgcc accctgtcaa atggagcgag
481 tctgcgggag tggatttagg cgtggattct ctgaccactg ttacaggtcc agtatggaat
541 atgtgccccc ttccaccgat tgattcacgt aacaatggcc ctgcaagtga gccacgcatt
601 ggagacatga tagaatttta tgaagggcat atatttcatt atgccatata tcttggtcag
661 gggaagacca taggagtcca ctccccccag gcagctttct ccatagctcg tataactata
721 caccctatgg cagcatggtg gcgtgtctgt tatgaaccaa cagatcaaca acgcctcagc
781 tatgaccaat taaaggaact tgagaatgaa ccgtggccct atgcatccat aacgaataat
841 tgttatgagt tctgctgccg tgtcatgtct ctagacgaca cctggttaca acgaaagctg
901 gtgacgtccg gtaggtttaa tcaccccacc caggagtggt ccaaggaaac acctgatttc
961 catcaagatt caaaattgga aatagtgaga gacgcaatac tgtccgccat aaatggcttg
1021 gtctctcaac cctttaagaa tatcctctca aaaattaagc cactgaattt gctgtctttg
1081 ctatcaaatt gtgattggac tttcatgggg gtcgtcgagc tagtggtgct actggctgaa
1141 ttgtttgaca tcttctggac cccacctgac atctccaact tcatagcatc tctcctacca
1201 gactttcacc tgcaagggcc agaggatttg gcaagagacc tggtcccatt aatattgggg
1261 ggtattggcc tggctattgg tttcactaga gacaaaatca caaaggtcat gaagagtgcc
1321 gttgacggtt tgcgctctgc cacgcagctt ggacaatatg gccttgaggt gttctcgatc
1381 ataaagaagt atttctttgg tggagaccaa actgagaaaa ctctcaaggg catagagaat
1441 gcagtcatag atatggaggt cctgtcaagt accaatgtca cacaactggt gcgcgacaag
1501 aagttggcca aaacatacat gaatatcctg gacaatgagg aggaaaaggc aagaaaactc
1561 tcagtgcgca gtgcagaccc acatgttgtg acaacagtca acaatctcat ctcgcgcata
1621 tccatggcgc ggtcagctct tgccaaggct caggctgaga tgactaatcg ggcacgcccc
1681 gtggtcataa tgatgtgtgg gccaccaggt ataggaaaaa ccaaagctgc tgaacacctg
1741 gctaatcgcc tggctagtga gataagacca gggggaaaag tgggtttagt gcctagagaa
1801 tccattgacc actgggatgg ctaccatggg gaagaagtcc tgctgtggga tgactacggc
1861 atgtccaaga taacagagga ttgtaataaa ctacaggcca tagctgatac tgccccactc
1921 acactcaact gtgacagaat agaaaacaag ggtatgcagt ttgtgtcaga tgcaataata
1981 ataacaacca atgcccccgg gccagccccc gtcgactttg ttaatcttgg tccagtatgt
2041 cgacgtgtag acttcttggt gtactgcacc gcccccgaaa ttgaacagac cagaagagcc
2101 caccctgggg acaccaatgc tattaagaat ttgttcaaac cagacttttc ccatctgaaa
2161 atggagatag caccacaagg gggatttgac aatcaaggta acaccccttt tgggaagggt
2221 gccatgaaat caaccacact caataggcta ctcatacagg cagttgcctt gacaatggaa
2281 agacaagatg agttccagat gcagggggtg gtgtataact ttgatgagga ccgggttaca
2341 gctttcacta gcctggcccg ggtcaacgga ctaggacttc tgagcatggc tgcactcggt
2401 aaaaagttgc ggagcgtcaa taatatggaa ggactccgca acgccctcaa agggtacaag
2461 atcactgagt gtgatattgt gtggaacaac aggacttaca ccattaaggg agatggatca
2521 aatgtgagcg tcacagaaaa gcaggcagct gccactcttc agcaacaagc catcagctca
2581 gtcactttgg cactttctag gttgcgcgcc gcacgagcgt tggcgtatgc atcatgtctc
2641 cagagcgcag taaccaccat cttgcaaatg gctgggtctg cagtggtgat cagcagggca
2701 gtcaaacgca tgtttgggac ccacaccaat cagccagcac tggagggcaa acccagggaa
2761 cacaactgca gggcccaccg tgccgaaagg gaaggtcgtg gccctattgg ccatgatggc
2821 atcatagagc ggtacggtct gtgtgagact gatcaagaag aagaagaaaa gatcgagatg
2881 gaagtgccaa ctgcagacaa agaaggcaag aataaaggca agaacaagaa ggggcgaggt
2941 aggaaaaaca actacaacgc tttctctagg cgaggcctaa gtgatgagga gtatgaagaa
3001 tacaagaagg tcagagaaga gaagggtggt aactacagca tccaagaata cctcgaggac
3061 cgccaacgat atgaagaaga gttggctgag gtccaagcag gtggagatgg cgggatcggt
3121 gaaacagagg cagagatccg ccatcgtgtt ttctacaaat ccaagagtgg catgcgaaaa
3181 caacgtcaag aggagcgccg acagcttgga ttagtcacag gcactgaaat cagaaagcgc
3241 aagcccatag attggacacc acctaagaat gactggtcag aagacactag acaggtcaac
3301 tatgatgagc acatcagctt tgaagcccca ccttctattt ggagtagagt ggtcaaattt
3361 ggcagtggat ggggcttttg ggtgagttca acagttttta ttacaaccac acacgtcata
3421 ccaccagaag ccaaagaaat ttttggggaa aaactttcag acatagcaat acacagagtt
3481 ggagagttca cacaatttag attctctaag aaaatgagac ctgacctcag tggtatggtc
3541 cttgaggagg ggtgcccgga gggaacggtg tgcactataa tggtgaagag agactcaggc
3601 gaactgctac ctctagcagt gcgcatggga gctgttgcgt ccatgaagat acaaggtaag
3661 ctcatgcatg gtcagtctgg tatgttgcta accggtgcaa atgctaaggg aatggacctg
3721 ggcaccatcc ctggtgactg tggagctcca tatgtgcata agaggggaaa tgactgggtg
3781 gtgtgtggag tgcacgcagc agcaaccaag tcaggcaaca ccgtggtgtg tgcaatacaa
3841 tcaggtgaag gtgaagctac ccttgaaggg ggcggacaaa acaaagggca ttatgcaggc
3901 cacccaattt taagatatgg caatgggccc tctctctcta caaaaactaa attctggaaa
3961 tcaacccccc aaccactccc gcctggaacc tatgaaccag cttacctagg tggacgtgac
4021 cccagggtag acggtggtcc atctctccaa caagtcctac gtgaccaact caaacctttt
4081 gctgagcccc gtggcagact gccagaaccg agcttgctcg aagcagctgt ggagactgtt
4141 acaaatgttt tagaacaaac catggacaca cctgtacctt ggagttatag tgacgcttgt
4201 atgtctcttg acaagaccac cagctcaggt tatccgcacc ataaacgcaa gaatgaagat
4261 tggaatggca atgcgtttgt gcgtgaactt ggggaacagg cagctcatgc taataacatg
4321 tatgaattgg gcaagtcagt taaaccagtt tacacagcag cacttaaaga tgaattggta
4381 aaacctgaaa aagtgtacac aaaaataaaa aagagactgc tttggggagc ggaccttggc
4441 acagtcattc gggctgcccg agccttcggc ccattttgtg aggcgataaa gccacatgtg
4501 ataaaattgc cgatcaaggt tggcatgaat gcaattgaag atggccccct catatatgct
4561 gaacatgcaa agtataaata tcattttgat gcagattaca cagcttggga ctcaactcag
4621 aatagagaaa tcatgctaga atctttcaat atcatgtgta agcttacagc caatccatca
4681 ctggccgctg ttgtggcaca ggacctactg tccccatcag aaatggatgt gggggattat
4741 gtgattagtg ttaaggatgg cctcccctca gggttcccat gcacctcgca agtgaacagc
4801 ataaaccatt ggatttacac tctgtgcgcc ctgtcagagg tcactggcct ggcacctgat
4861 gttttgcaat cccagtctta cttctccttc tacggggatg atgagatagt gtcaactgat
4921 gtggaatttg acccaataaa actcacccaa gtgctcagag agtatggttt gaagcccacc
4981 cgacctgaca aatcagaagg acccatcata gtgaaacaac agatagatgg gctggtcttc
5041 ctcaggcgca ctatatcaaa agacgctgct ggttaccagg ggcgtttaga ccgcaactcc
5101 attgaaaggc aattgtggtg gactcgggga ccaaatcatg atgacccctt cgaaactctg
5161 ataccccatc aacaaaggaa aattcaattg atatccctgc ttggtgaggc tgcactccat
5221 ggagagaaat tttacaggaa gattgctaat agggtgatac aagaagttaa ggagggaggg
5281 cttgaactct acataccagg ttggcaggcc atgtttcgct ggatgcgatt ccatgacttg
5341 agcatgtgga caggagatcg caatctactg cccgattatg taaatgatga tggcgtctaa
5401 ggacgccccc tcaaacatgg atggcaccag tggtgccggt cagctggttc cagaggttaa
5461 tgcagctgaa cctctacccc ttgaaccggt ggtgggcgcc gcaactgcgg tggccaccgc
5521 tggacaggtt aatatgatag acccctggat tatgaataat tttgtccaag cccctgaagg
5581 cgaatttact atttcaccca acaacacccc tggagatatt ttatttgatt tgcgtctggg
5641 accacacctt aacccctttc tcctgcattt gtcccagatg tataatggat gggttgggaa
5701 tatgagagtt agggtcatgc ttgcagggaa cgcgttctct gctggtaaga tcataatttg
5761 ttgtgtccca cctggctttg aatcccagaa catatcaatt ggacaagcca caatgtttcc
5821 ccatgtcatt gctgatgtga gagtcctgga gcccatagag gtcccccttg atgatgtgcg
5881 caatgtcctg ttccacacaa atgagaaccg cccaaccatg cgactgctct gtatgttgta
5941 cacacctctc cgtgctggag gagcttcatc aggcacagac ccttttgtca ttgctggccg
6001 tgtgttaact tgccctgctc ctgatttcaa ttttctgttt cttgtgcccc ctagtgtaga
6061 acaaaagacc aggcaattga ctatacccaa tatacccttg aacaatttgg ctaactccag
6121 agtgcctgca atgataaaca agatgacagt ctctgctgat cagaatcagg tggtccagtt
6181 tcaaaatggc cgttgcacac ttgaagggca actcttaggc acaacccctg tttcagccaa
6241 tcaagttgcc cgtatacgtg gcaaagtctt ttccaccaac tccgggacgg ggcttaattt
6301 aactgaagta gatggaaccc cctaccatgc atttgagagc ccggcccctc tcggttttcc
6361 tgacattggt aattgtgatt ggcacgtgta tgcctttaag gtaaatcaaa acacagggga
6421 ccccatgtac aggctggaca taacacaagg aaactcattt gcgccgcatc ttggctccat
6481 tgagtttagt tctgaaaacc acccatcggg ggaccaacta ggcacactta cttggatctc
6541 ccctcttaac aatgcttcta gggttgatcc ctggaaaatc ccaacatatg ggtcgacatt
6601 gactgagtcc accaacttgg caccacccat ctttccacca ggttttggtg aggctatagt
6661 ttattttatg tcagattttc ctattgtgtc aggtaatact gcccaaatcc cctgcaccct
6721 gccccaagaa tttgtttcat cctttgtgga gcagcaggca ccgatccgag gtgaagctgc
6781 tctattgcat tatgtggacc cagataccca tcgcaatctg ggagaattca aattgtaccc
6841 tgatgggttc atcacttgtg tgcctaacac gggtggcggc ccccaaaatc tcccatcgaa
6901 tggtgtcttt gttttctctt cttgggtttc tagatattat caattaaagc ctgtgggaac
6961 aaccggtccg gttaggaggc ttggtgtgag aagggtataa tggcccaagc catcatagga
7021 gctattgccg ccaccgctgc tggcagcgca gtgggggcag gtatccaagc tggaactgag
7081 gcagccttgc aataccaaag gtttcaacag gatctcacac tgcaggagaa ttcttttaag
7141 catgatgaaa ggatgttggg tttacaaatt gaggggtcta atgctttgct acaaaagaat
7201 ctttctaccc gctataatct cttagttggt gcaggtcttt cctcagctga tgccgcaagg
7261 tctatagctg gggctccagt gacaaaaatc gtggactgga atggggtaag aatcgctgcc
7321 cccacgtcca ctgccaccac cctccgttct ggcaatttta tgagcatacc aaccataccc
7381 aaaaaggagc cccaaaaact gtcagcacgt tctgtaggtc tttccaatcc taattatgat
7441 tcatccacta tgatttctag gacaagtcaa tgggtggagt cgcaaaattc aattaggaat
7501 ttgtcacctt tccatagttc ggccctgagg actacttggg taacccctcc tggttctact
7561 tctacttcaa ctttttctac tgtctcttcg gcgccacggt acttcaacac cgagcgtctt
7621 cctttgttcg caaacaatag gaaatag
//