Typing tool
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Typing tool
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Complete norovirus genomes
| KX907729 | GI.7 | |
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| GI.P7 |
ORF1: 5..5398
ORF2: 5382..7001
ORF3: 7001..7648
LOCUS KX907729 7648 bp RNA linear VRL 07-NOV-2016
DEFINITION Norovirus Hu/USA/2011/GI.P7_GI.7/CS5567, partial genome.
ACCESSION KX907729
VERSION KX907729.1
KEYWORDS .
SOURCE Norovirus Hu/USA/2011/GI.P7_GI.7/CS5567
ORGANISM Norovirus Hu/USA/2011/GI.P7_GI.7/CS5567
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7648)
AUTHORS Collins,N., Aswath,K., Barclay,L. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (28-SEP-2016) NCIRD/DVD/GRVLB, CDC, 1600 Clifton Rd NE,
Atlanta, GA 30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 8
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7648
/organism="Norovirus Hu/USA/2011/GI.P7_GI.7/CS5567"
/mol_type="genomic RNA"
/strain="Hu/USA/2011/GI.P7_GI.7/CS5567"
/host="Homo sapiens"
/db_xref="taxon:1914543"
/geo_loc_name="USA"
/collection_date="27-Jun-2011"
/note="genotype: GI"
CDS 5..5398
/note="ORF1"
/codon_start=1
/product="polyprotein"
/protein_id="APA31975.1"
/translation="MMMASNDAITAADVSKQNANTNNENIGSRLMAKLKERISSQRGE
GTTKIKNTEMALELIRRSQTPSPTRPDPPPKSQRDRPPRTVSEVKQALGWGDSAHKDY
GARAWCDLTAEEKKEILDNNERLFDAGGVTPSTVPSTFERCETLEQTNDNHPVRWNES
TGVNLGVGPLTTVAGPVWNMCPLPPIDSRNNGPANEPRIGDMIEFYEGHIFHYAIYLG
QGKTIGVHAPRAAFSIARITIHPITAWWRICYEPTDHQRLSYDQLKELENEPWPYASI
TNNCYEFCCRVMSLDDSWLQRKLVTSGRFNHPTQEWSRDTPDFHQDSKLEIVRDAILS
AINGLVSQPFKNILSKIKPLNLLSLLSNCDWTFMGVVELVVLIAELFDIFWTPPDVSN
FIASLLPDFHLQGPEDLAKDLVPLILGGIGLAIGFTRDKITKVMKSAVDGLRSATQLG
QYGLEIFSIIKKYFFGGDQTEKTLKGIENAVIDMEVLSSTNVTQLVRDKKLAKTYMNI
LDNEEEKARKLSVRSADPHVVTTVNNLISRISMARSALAKAQAEMTSRARPVVIMMCG
PPGIGKTKAAEHLANRLAGEIRPGGKVGLVPRESIDHWDGYHGEEVLLWDDYGMSKIT
EDCNKLQAIADTAPFTLNCDRIENKGMQFVSDAIIITTNAPGPAPVDFVNLGPVCRRV
DFLVYCTAPEIEQTRRTHPGDTNAIKDLFKPDFSHLKMEIAPQGGFDNQGNTPFGRGA
MKPTTLNRLLIQAVALTMERQDEFQMQGAVYNFDEDRVTAFTSLARANGLGLLSMAAL
GKRLRSVNNMEGLRNALKGYKITECDIVWNNRTYTIKGDGSNVSITEKQVAASLQQQA
VSSVTLALSRLRAARALAYASCFQSAVVTILQMAGSAVVISRAVKRMFGTHTNQPALE
GKPKEHNCRVHRAEREGHGPIGHDGIIERYGLCESDQDEEKIVMEVPTADKEGKNKGK
NKKGRGRKNNYNAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEELAEVQ
AGGDGGIGETEAEIRHRVFYKSKSGMRKQRQEERRQLGLVTGAEIRKRKPIDWTPPKN
DWSEDTREVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPDAKEVF
GEKLSDIAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTIMVKRDSGELLPLA
VRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVCGV
HAAATKSGNTVVCAIQSGEGEATLEGGGQNKGHYAGHPILRYGNGPSLSTKTKFWKST
PQPLPPGTYEPAYLGGRDPRVDGGPSLQQVLRDQLKPFAEPRGRMPEPSLLEAAVETV
TNVLEQTMDTPVPWSYSDACMSLDKTTSSGFPHHKRKNDDWNGSAFVRELGEQAAHAN
NMYELGKSVKPVYTAALKDELVKPEKVYTKIKKRLLWGADLGTVIRAARAFGPFCEAI
KPHVIKLPIKVGMNAIEDGPLIYAEHAKYKYHFDADYTAWDSTQNREIMLESFNIMCK
LTADPSLAAIVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYTLCALS
EVTGLAPDVLQSQSYFSFYGDDEIVSTDVEFDPTKLTQVLREYGLKPTRPDKSEGPII
VKHQIDGLVFLRRTISKDAAGYQGRLDRNSIERQLWWTRGPNHDDPFETLIPHQQRKI
QLISLLGEAALHGEKFYRKIANRVIQEVKEGGLELYIPGWQAIFRWMRFHDLSLWTGD
RNLLPDYVNDDGV"
CDS 5382..7001
/note="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="APA31976.1"
/translation="MMMASKDAPSNMDGTSGAGQLVPEVNAAEPLPLEPVVGAATAVA
TAGQVNLIDPWIMNNFVQAPEGEFTISPNNTPGDILFDLQLGPHLNPFLQHLSQMYNG
WVGNMRVRVMLAGNAFTAGKIIICCVPPGFASQNISIGQATMFPHVIADVRVLEPIEI
PLDDVRNVLFHTNESRPTMRLLCMLYTPLRAGGASSGTDPFVIAGRVLTCPSPDFNFL
FLVPPSVEQKTRQLTVPNIPLNNLANSRVPAMINKMTVSTDQSQVVQFQNGRCTLEGQ
LLGTTPVSASQVARIRGKVFSTASGKGLNLTELDGTPYHAFESPAPLGFPDIGACDWH
VSTFKVDQNLSGDPMSRLDIKQNAPFAPHLGSIEFTSDQEPTGDQLGTLAWVSPSTSG
ARVDPWKIPSYGSTVTESTHLAPPIFPPGFGEAIVYFMSDFPIVSGNTAQVPCTLPQE
FVSHFVEQQAPIRGEAALLHYVDPDTHRNLGEFKLYPDGFITCVPNTGGGPQNLPING
VFVFSSWVSRYYQLKPVGTAGPARRLGVRRV"
CDS 7001..7648
/note="ORF3"
/codon_start=1
/product="hypothetical protein"
/protein_id="APA31977.1"
/translation="MAQAIIGAIAATAAGSAVGAGIQAGTEAALQYQRFQQDLTLQEN
SFKHDERMLGLQIEGSNALLQKNLSTRYNLLVGAGLSSADAARSIVGAPVTKIVDWNG
VRIAAPTSTATTLRSGNFMSIPVTPRKESQNLSARSVGLTNPNYDSSTMISRTTQWVE
SQNSARNLSPFHSSALRTTWVTPPGSTSTSTFSTVSSVPRFFNTERLPLFANNRK"
ORIGIN
1 gtgaatgatg atggcgtcta acgacgctat taccgctgct gatgtcagca aacaaaatgc
61 taacaccaac aacgaaaata tcggttctcg cctcatggcg aaactgaagg agcgtataag
121 ctcccaacgt ggtgaaggca ccacaaagat taaaaacact gaaatggcat tggaattaat
181 acgtaggtcc caaacaccat ccccaacacg cccagatccc cctcctaaat cgcagcgtga
241 tcgccctcca agaactgtat cagaagttaa acaagcttta ggttggggtg attccgccca
301 taaggattat ggggcccgag cgtggtgtga cctaacagct gaggaaaaga aagagatctt
361 ggacaacaat gagcgcctct ttgatgctgg cggtgtgact ccatcaacag taccaagcac
421 ttttgagagg tgtgagacac ttgaacaaac caatgataac catcctgtta gatggaatga
481 gtccacggga gtgaatctag gtgttggccc tctaaccaca gttgcaggtc cagtgtggaa
541 tatgtgtcct cttccaccga ttgactcgcg caataatggc cctgcaaatg aaccacgtat
601 tggggatatg atagagtttt atgaagggca catatttcac tatgccatat accttggcca
661 agggaagacc ataggggtcc acgccccccg agcagccttc tccatagcac gcatcaccat
721 acaccctatc acagcatggt ggcgtatctg ctatgagccc acagaccatc aacgcctcag
781 ctatgaccaa ttgaaagagc ttgagaatga gccatggcct tatgcatcca taacaaacaa
841 ttgttatgag ttctgttgcc gcgtcatgtc cctggacgac tcctggttgc agcgaaaact
901 agtgacctct ggcaggttta accaccctac tcaggaatgg tctagggaca caccggactt
961 ccatcaagat tcgaaattag aaatagtgag agatgcaatt ctatctgcta taaatggcct
1021 agtctctcaa cctttcaaaa acattctttc aaagatcaag ccactaaatc tgttatccct
1081 gctatcaaat tgtgactgga cttttatggg ggtcgtcgag ctggtggtgt tgatagctga
1141 actgtttgac atcttctgga cccctcctga tgtttccaac ttcatagcgt ctcttctgcc
1201 tgatttccac ctgcaaggac cagaggattt ggctaaagat ctggttccac tgatattggg
1261 gggtattggc ttggccattg gtttcaccag agataagata acaaaagtca tgaagagcgc
1321 cgttgatggc ttgcgatcag ccacacagct cgggcaatat ggcctcgaga tattctcaat
1381 catcaaaaag tatttctttg gtggagatca aaccgagaaa acccttaagg gcatagaaaa
1441 tgctgtcata gacatggaag tcttgtcgag caccaatgtc acccagttgg tgcgcgataa
1501 aaagttggct aagacctaca tgaacatcct agataatgaa gaagagaaag caagaaaact
1561 ctcagtacgt agtgctgacc cacatgttgt aacaacggtc aacaatctca tttcgcgcat
1621 atccatggcg cgttcagccc tcgccaaagc ccaagctgaa atgactagtc gggcgcgccc
1681 agtagtcata atgatgtgtg gaccaccagg cataggaaaa actaaagctg ctgagcactt
1741 agccaaccgc ttagctggtg aaataagacc agggggcaaa gtgggactgg tgcctagaga
1801 atccattgac cattgggatg gctatcatgg ggaagaagtt ctattgtggg atgactatgg
1861 catgtctaag ataacagagg attgcaacaa attgcaagcc atagctgaca ctgccccgtt
1921 cacactcaac tgtgacagga tagagaacaa aggcatgcaa ttcgtgtcgg atgcaataat
1981 aataacaaca aatgcccctg ggccagcccc cgttgacttt gtcaaccttg gtccagtgtg
2041 tcgacgtgtg gacttcctgg tgtactgcac cgcccccgaa attgaacaga ctaggagaac
2101 ccatcccgga gacaccaatg ctatcaaaga cctgttcaaa ccagactttt cccaccttaa
2161 aatggagata gcaccacaag gggggtttga caatcaaggt aataccccct ttgggagggg
2221 cgctatgaag ccaaccacac ttaataggtt actcatacaa gctgttgcac taacaatgga
2281 aagacaagat gagttccaaa tgcaaggggc ggtgtataat tttgatgagg accgggtgac
2341 agctttcacc agtttggccc gggccaatgg gctaggtctc ctgagtatgg cagcacttgg
2401 aaaaagatta cggagtgtca acaacatgga aggacttcgc aatgctctca aggggtacaa
2461 gatcactgag tgtgatattg tgtggaacaa tagaacttac accattaagg gggatggatc
2521 aaatgtgagc atcactgaga aacaggtggc agcctctctc cagcagcaag ccgtcagctc
2581 agtaaccctg gcgctttcta ggttgcgcgc cgcgcgagcg ctggcgtatg catcttgctt
2641 tcagagcgca gtggttacca tcctacaaat ggccgggtct gcagtggtga tcagtagggc
2701 agtcaaacgt atgttcggga cccacacaaa ccagccggcc ctggagggca aacccaagga
2761 acacaactgc agagtccacc gtgctgaaag ggaaggccat ggacctattg ggcatgacgg
2821 tatcatagaa cgatacggcc tgtgtgagag cgaccaggat gaggagaaga tcgtgatgga
2881 agtgccaact gctgacaaag agggcaaaaa taaaggcaaa aacaagaagg ggcgaggcag
2941 gaagaacaac tacaacgcct tttctaggcg aggcctgagt gatgaggagt atgaagaata
3001 taaaaaggtt agagaagaaa agggtggcaa ctacagcatc caagagtacc ttgaggaccg
3061 tcaacgttac gaagaagaac tcgctgaggt ccaagctggt ggagatggcg ggatcggtga
3121 gacggaagca gagatccgcc atcgggtctt ctataaatcc aaaagtggta tgcgcaaaca
3181 gcgccaagag gagcgccgac aacttgggct agttacgggt gctgaaatta ggaaacgcaa
3241 acccatagac tggacaccgc caaaaaatga ctggtcagaa gatactaggg aagtcaatta
3301 tgacgaacac atcagttttg aagccccacc ctctatttgg agtagggtcg taaaatttgg
3361 cagtggatgg ggcttttggg taagttcaac agttttcatt acaaccacac acgtcatacc
3421 accggatgct aaagaagttt ttggtgaaaa gctctcagac atagcaatac acagagttgg
3481 ggaattcaca caatttagat tctccaaaaa gatgagacct gacctcagtg gtatggtatt
3541 ggaagagggt tgcccagaag gaactgtatg cactataatg gtgaagagag actcaggtga
3601 actgctacca ttggccgtgc gcatgggagc tgtcgcatcc atgaagatac agggaaagct
3661 tatgcacggt caatctggca tgctgctaac tggtgcgaat gcaaagggaa tggatttagg
3721 caccattcct ggtgattgtg gagctccata tgtacacaaa agaggaaatg attgggtggt
3781 gtgtggagtg cacgcagccg caaccaagtc aggcaatact gttgtttgtg caatacagtc
3841 aggtgaaggt gaagccactc ttgagggggg tggacaaaac aaagggcatt atgcaggcca
3901 cccaatttta aggtatggta atgggccctc cctctctaca aaaaccaaat tttggaagtc
3961 aactccccaa cccctccccc ctgggaccta cgaaccagcc tacttaggtg ggcgtgaccc
4021 cagagtggat ggcggaccat cactccaaca ggtcctacgt gatcagctca agccttttgc
4081 tgaaccccgt ggtaggatgc cagagccaag cttgctagaa gcagctgtgg agaccgtcac
4141 aaacgtctta gagcaaacca tggacacgcc tgtgccatgg agttacagcg acgcctgcat
4201 gtcgcttgac aagactacta gctcaggctt tccacaccac aaacgcaaga acgatgactg
4261 gaatggcagt gcgtttgtgc gtgagcttgg tgaacaggca gcccatgcca acaacatgta
4321 tgaattaggc aaatcagtca aaccagttta cactgcagca cttaaagatg aattggtgaa
4381 acccgaaaaa gtgtatacaa agataaagaa aagattgctt tggggtgcag acctcggcac
4441 agttattcga gctgctcgag cctttggccc attctgtgaa gctataaaac cacatgtgat
4501 aaaattgccg attaaagtcg gcatgaatgc aattgaagat ggccccctca tatatgctga
4561 acatgctaag tataaatatc actttgatgc agactacaca gcttgggatt caacacagaa
4621 cagggagatt atgttagaat ccttcaacat catgtgtaag cttacagctg atccatcact
4681 ggctgccatt gtcgcacagg acttgttgtc cccgtcggaa atggacgtgg gggactacgt
4741 gattagtgtc aaggatggtc tcccctcagg attcccatgc acctcacaag tgaatagcat
4801 aaatcattgg atttataccc tgtgcgccct ttcggaagtc acaggtttgg cccctgatgt
4861 tctgcaatct caatcttact tttccttcta tggggatgat gaaattgtat caactgatgt
4921 ggaatttgac ccaacaaaac tcacccaagt gcttagagag tatggcttga aacccacgcg
4981 gcctgacaaa tcagaagggc ctatcatagt gaagcatcaa atagatgggt tagtttttct
5041 gaggcgcact atatcaaaag atgctgctgg ctaccaaggg cgcctggacc gcaactccat
5101 tgaaagacaa ttatggtgga cccggggccc aaaccacgat gatccctttg agacattgat
5161 accccatcaa caaagaaaga ttcaattgat ttccttactt ggtgaggctg cgcttcacgg
5221 agagaaattc tatagaaaga ttgccaacag agtcatacag gaagtcaaag aggggggcct
5281 tgagctctat ataccaggtt ggcaggccat attccgctgg atgcgtttcc atgacttgag
5341 cttgtggaca ggagatcgca atctcctacc cgattatgta aatgatgatg gcgtctaagg
5401 acgccccctc aaacatggat ggcactagtg gtgccggtca gctggttcca gaggttaatg
5461 cagctgaacc cctacccctt gagccggtgg tgggtgccgc aactgcggtg gccactgctg
5521 ggcaagttaa tttaatagac ccctggatca tgaataattt tgtccaagcc cctgagggcg
5581 aattcactat ctcccctaac aatacccctg gagatattct atttgatttg caattgggac
5641 cacatcttaa tccttttctt caacatctgt cccaaatgta taatggttgg gtgggaaaca
5701 tgagagttag agtcatgctc gcaggaaatg cgttcactgc tggtaaaatc ataatttgtt
5761 gtgtcccacc tggctttgca tcccaaaata tatcaattgg acaagccaca atgttcccac
5821 atgttatagc tgatgtgaga gtattagaac ctattgaaat cccccttgat gatgtacgca
5881 atgtcttgtt tcacaccaat gaaagccgcc caactatgcg gttactctgt atgctgtaca
5941 cacccctccg cgctggaggc gcttcatcag gcacggaccc ttttgtcatt gcaggtcgtg
6001 tcctaacctg cccttcccct gatttcaatt ttctgttcct cgtacctcct agcgtggaac
6061 agaagactag gcaattgact gtacccaata tacccttgaa caatttggcc aactccagag
6121 tgcctgcaat gataaataag atgacagtct ccactgatca aagtcaggta gtccagttcc
6181 aaaatggtcg ttgcacactc gaggggcaac ttttgggcac aacccctgtc tcagctagtc
6241 aagtggcccg catacgcggt aaagttttct ccactgcatc tgggaaaggg ctcaatttaa
6301 ctgaattgga tgggaccccc tatcatgcat tcgagagccc agcccccctt ggttttcctg
6361 acataggagc ttgtgattgg catgtgtcaa ctttcaaggt ggatcaaaat ctttcagggg
6421 accccatgtc caggctagat ataaaacaaa atgccccgtt tgcaccacat cttggttcca
6481 ttgaattcac ctctgaccag gaaccaaccg gggatcaatt gggcacacta gcttgggtct
6541 ccccttccac tagtggagct agggtcgatc cttggaaaat tccatcatat ggttcaactg
6601 taactgagtc cactcacctg gcaccaccta tctttccgcc aggttttggt gaagccatag
6661 tctatttcat gtcagacttt cccattgtgt caggcaacac tgctcaagtt ccctgtacct
6721 tacctcaaga atttgtttca cactttgtgg aacaacaggc accaattcga ggtgaagctg
6781 ccctattgca ttatgtagat ccagacaccc accgtaattt gggagagttc aaattgtacc
6841 ctgatgggtt cattacctgt gtgccaaata caggcggtgg cccccaaaac cttcctataa
6901 atggggtttt tgtcttttct tcttgggttt ctagatatta ccaattaaag cctgtgggaa
6961 cagccggtcc ggccaggagg cttggtgtga gaagggtata atggctcaag ccattatagg
7021 agcaattgcc gccaccgctg ctggcagcgc agtgggggca ggtatccaag ctggcacaga
7081 agcagccctg caatatcaga gatttcaaca agatctcacc ctacaggaga actcttttaa
7141 acatgatgag agaatgttgg gtttacaaat tgagggatct aatgctttat tacaaaagaa
7201 tctttccact cgctataacc tattagttgg tgcaggtctt tcttcggctg atgctgcaag
7261 gtctatcgtt ggggcccctg tgacaaaaat tgtggattgg aatggggtga ggattgccgc
7321 ccctacgtcc actgccacca ctctccgatc tggcaatttt atgagcatac cagtcacgcc
7381 gagaaaggag tcccaaaatc tgtcagcacg ttctgtaggt cttactaatc ctaactatga
7441 ctcatctact atgatctcta gaacaaccca gtgggtggag tcacaaaatt cagctagaaa
7501 tttatcacct tttcatagct cagccctaag gaccacatgg gtaactcctc ctggctctac
7561 ttctacttca actttttcca ctgtctcttc ggtgccacgg ttctttaaca ccgagcgcct
7621 tcccttgttc gcaaataata ggaagtag
//