Typing tool
|
Complete norovirus genomes
KX907729 | GI.7 | ||
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GI.P7 |
ORF1: 5..5398 ORF2: 5382..7001 ORF3: 7001..7648LOCUS KX907729 7648 bp RNA linear VRL 07-NOV-2016 DEFINITION Norovirus Hu/USA/2011/GI.P7_GI.7/CS5567, partial genome. ACCESSION KX907729 VERSION KX907729.1 KEYWORDS . SOURCE Norovirus Hu/USA/2011/GI.P7_GI.7/CS5567 ORGANISM Norovirus Hu/USA/2011/GI.P7_GI.7/CS5567 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7648) AUTHORS Collins,N., Aswath,K., Barclay,L. and Vinje,J. TITLE Direct Submission JOURNAL Submitted (28-SEP-2016) NCIRD/DVD/GRVLB, CDC, 1600 Clifton Rd NE, Atlanta, GA 30329, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. 8 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7648 /organism="Norovirus Hu/USA/2011/GI.P7_GI.7/CS5567" /mol_type="genomic RNA" /strain="Hu/USA/2011/GI.P7_GI.7/CS5567" /host="Homo sapiens" /db_xref="taxon:1914543" /country="USA" /collection_date="27-Jun-2011" /note="genotype: GI" CDS 5..5398 /note="ORF1" /codon_start=1 /product="polyprotein" /protein_id="APA31975.1" /translation="MMMASNDAITAADVSKQNANTNNENIGSRLMAKLKERISSQRGE GTTKIKNTEMALELIRRSQTPSPTRPDPPPKSQRDRPPRTVSEVKQALGWGDSAHKDY GARAWCDLTAEEKKEILDNNERLFDAGGVTPSTVPSTFERCETLEQTNDNHPVRWNES TGVNLGVGPLTTVAGPVWNMCPLPPIDSRNNGPANEPRIGDMIEFYEGHIFHYAIYLG QGKTIGVHAPRAAFSIARITIHPITAWWRICYEPTDHQRLSYDQLKELENEPWPYASI TNNCYEFCCRVMSLDDSWLQRKLVTSGRFNHPTQEWSRDTPDFHQDSKLEIVRDAILS AINGLVSQPFKNILSKIKPLNLLSLLSNCDWTFMGVVELVVLIAELFDIFWTPPDVSN FIASLLPDFHLQGPEDLAKDLVPLILGGIGLAIGFTRDKITKVMKSAVDGLRSATQLG QYGLEIFSIIKKYFFGGDQTEKTLKGIENAVIDMEVLSSTNVTQLVRDKKLAKTYMNI LDNEEEKARKLSVRSADPHVVTTVNNLISRISMARSALAKAQAEMTSRARPVVIMMCG PPGIGKTKAAEHLANRLAGEIRPGGKVGLVPRESIDHWDGYHGEEVLLWDDYGMSKIT EDCNKLQAIADTAPFTLNCDRIENKGMQFVSDAIIITTNAPGPAPVDFVNLGPVCRRV DFLVYCTAPEIEQTRRTHPGDTNAIKDLFKPDFSHLKMEIAPQGGFDNQGNTPFGRGA MKPTTLNRLLIQAVALTMERQDEFQMQGAVYNFDEDRVTAFTSLARANGLGLLSMAAL GKRLRSVNNMEGLRNALKGYKITECDIVWNNRTYTIKGDGSNVSITEKQVAASLQQQA VSSVTLALSRLRAARALAYASCFQSAVVTILQMAGSAVVISRAVKRMFGTHTNQPALE GKPKEHNCRVHRAEREGHGPIGHDGIIERYGLCESDQDEEKIVMEVPTADKEGKNKGK NKKGRGRKNNYNAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEELAEVQ AGGDGGIGETEAEIRHRVFYKSKSGMRKQRQEERRQLGLVTGAEIRKRKPIDWTPPKN DWSEDTREVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPDAKEVF GEKLSDIAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTIMVKRDSGELLPLA VRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVCGV HAAATKSGNTVVCAIQSGEGEATLEGGGQNKGHYAGHPILRYGNGPSLSTKTKFWKST PQPLPPGTYEPAYLGGRDPRVDGGPSLQQVLRDQLKPFAEPRGRMPEPSLLEAAVETV TNVLEQTMDTPVPWSYSDACMSLDKTTSSGFPHHKRKNDDWNGSAFVRELGEQAAHAN NMYELGKSVKPVYTAALKDELVKPEKVYTKIKKRLLWGADLGTVIRAARAFGPFCEAI KPHVIKLPIKVGMNAIEDGPLIYAEHAKYKYHFDADYTAWDSTQNREIMLESFNIMCK LTADPSLAAIVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYTLCALS EVTGLAPDVLQSQSYFSFYGDDEIVSTDVEFDPTKLTQVLREYGLKPTRPDKSEGPII VKHQIDGLVFLRRTISKDAAGYQGRLDRNSIERQLWWTRGPNHDDPFETLIPHQQRKI QLISLLGEAALHGEKFYRKIANRVIQEVKEGGLELYIPGWQAIFRWMRFHDLSLWTGD RNLLPDYVNDDGV" CDS 5382..7001 /note="ORF2" /codon_start=1 /product="major capsid protein VP1" /protein_id="APA31976.1" /translation="MMMASKDAPSNMDGTSGAGQLVPEVNAAEPLPLEPVVGAATAVA TAGQVNLIDPWIMNNFVQAPEGEFTISPNNTPGDILFDLQLGPHLNPFLQHLSQMYNG WVGNMRVRVMLAGNAFTAGKIIICCVPPGFASQNISIGQATMFPHVIADVRVLEPIEI PLDDVRNVLFHTNESRPTMRLLCMLYTPLRAGGASSGTDPFVIAGRVLTCPSPDFNFL FLVPPSVEQKTRQLTVPNIPLNNLANSRVPAMINKMTVSTDQSQVVQFQNGRCTLEGQ LLGTTPVSASQVARIRGKVFSTASGKGLNLTELDGTPYHAFESPAPLGFPDIGACDWH VSTFKVDQNLSGDPMSRLDIKQNAPFAPHLGSIEFTSDQEPTGDQLGTLAWVSPSTSG ARVDPWKIPSYGSTVTESTHLAPPIFPPGFGEAIVYFMSDFPIVSGNTAQVPCTLPQE FVSHFVEQQAPIRGEAALLHYVDPDTHRNLGEFKLYPDGFITCVPNTGGGPQNLPING VFVFSSWVSRYYQLKPVGTAGPARRLGVRRV" CDS 7001..7648 /note="ORF3" /codon_start=1 /product="hypothetical protein" /protein_id="APA31977.1" /translation="MAQAIIGAIAATAAGSAVGAGIQAGTEAALQYQRFQQDLTLQEN SFKHDERMLGLQIEGSNALLQKNLSTRYNLLVGAGLSSADAARSIVGAPVTKIVDWNG VRIAAPTSTATTLRSGNFMSIPVTPRKESQNLSARSVGLTNPNYDSSTMISRTTQWVE SQNSARNLSPFHSSALRTTWVTPPGSTSTSTFSTVSSVPRFFNTERLPLFANNRK" ORIGIN 1 gtgaatgatg atggcgtcta acgacgctat taccgctgct gatgtcagca aacaaaatgc 61 taacaccaac aacgaaaata tcggttctcg cctcatggcg aaactgaagg agcgtataag 121 ctcccaacgt ggtgaaggca ccacaaagat taaaaacact gaaatggcat tggaattaat 181 acgtaggtcc caaacaccat ccccaacacg cccagatccc cctcctaaat cgcagcgtga 241 tcgccctcca agaactgtat cagaagttaa acaagcttta ggttggggtg attccgccca 301 taaggattat ggggcccgag cgtggtgtga cctaacagct gaggaaaaga aagagatctt 361 ggacaacaat gagcgcctct ttgatgctgg cggtgtgact ccatcaacag taccaagcac 421 ttttgagagg tgtgagacac ttgaacaaac caatgataac catcctgtta gatggaatga 481 gtccacggga gtgaatctag gtgttggccc tctaaccaca gttgcaggtc cagtgtggaa 541 tatgtgtcct cttccaccga ttgactcgcg caataatggc cctgcaaatg aaccacgtat 601 tggggatatg atagagtttt atgaagggca catatttcac tatgccatat accttggcca 661 agggaagacc ataggggtcc acgccccccg agcagccttc tccatagcac gcatcaccat 721 acaccctatc acagcatggt ggcgtatctg ctatgagccc acagaccatc aacgcctcag 781 ctatgaccaa ttgaaagagc ttgagaatga gccatggcct tatgcatcca taacaaacaa 841 ttgttatgag ttctgttgcc gcgtcatgtc cctggacgac tcctggttgc agcgaaaact 901 agtgacctct ggcaggttta accaccctac tcaggaatgg tctagggaca caccggactt 961 ccatcaagat tcgaaattag aaatagtgag agatgcaatt ctatctgcta taaatggcct 1021 agtctctcaa cctttcaaaa acattctttc aaagatcaag ccactaaatc tgttatccct 1081 gctatcaaat tgtgactgga cttttatggg ggtcgtcgag ctggtggtgt tgatagctga 1141 actgtttgac atcttctgga cccctcctga tgtttccaac ttcatagcgt ctcttctgcc 1201 tgatttccac ctgcaaggac cagaggattt ggctaaagat ctggttccac tgatattggg 1261 gggtattggc ttggccattg gtttcaccag agataagata acaaaagtca tgaagagcgc 1321 cgttgatggc ttgcgatcag ccacacagct cgggcaatat ggcctcgaga tattctcaat 1381 catcaaaaag tatttctttg gtggagatca aaccgagaaa acccttaagg gcatagaaaa 1441 tgctgtcata gacatggaag tcttgtcgag caccaatgtc acccagttgg tgcgcgataa 1501 aaagttggct aagacctaca tgaacatcct agataatgaa gaagagaaag caagaaaact 1561 ctcagtacgt agtgctgacc cacatgttgt aacaacggtc aacaatctca tttcgcgcat 1621 atccatggcg cgttcagccc tcgccaaagc ccaagctgaa atgactagtc gggcgcgccc 1681 agtagtcata atgatgtgtg gaccaccagg cataggaaaa actaaagctg ctgagcactt 1741 agccaaccgc ttagctggtg aaataagacc agggggcaaa gtgggactgg tgcctagaga 1801 atccattgac cattgggatg gctatcatgg ggaagaagtt ctattgtggg atgactatgg 1861 catgtctaag ataacagagg attgcaacaa attgcaagcc atagctgaca ctgccccgtt 1921 cacactcaac tgtgacagga tagagaacaa aggcatgcaa ttcgtgtcgg atgcaataat 1981 aataacaaca aatgcccctg ggccagcccc cgttgacttt gtcaaccttg gtccagtgtg 2041 tcgacgtgtg gacttcctgg tgtactgcac cgcccccgaa attgaacaga ctaggagaac 2101 ccatcccgga gacaccaatg ctatcaaaga cctgttcaaa ccagactttt cccaccttaa 2161 aatggagata gcaccacaag gggggtttga caatcaaggt aataccccct ttgggagggg 2221 cgctatgaag ccaaccacac ttaataggtt actcatacaa gctgttgcac taacaatgga 2281 aagacaagat gagttccaaa tgcaaggggc ggtgtataat tttgatgagg accgggtgac 2341 agctttcacc agtttggccc gggccaatgg gctaggtctc ctgagtatgg cagcacttgg 2401 aaaaagatta cggagtgtca acaacatgga aggacttcgc aatgctctca aggggtacaa 2461 gatcactgag tgtgatattg tgtggaacaa tagaacttac accattaagg gggatggatc 2521 aaatgtgagc atcactgaga aacaggtggc agcctctctc cagcagcaag ccgtcagctc 2581 agtaaccctg gcgctttcta ggttgcgcgc cgcgcgagcg ctggcgtatg catcttgctt 2641 tcagagcgca gtggttacca tcctacaaat ggccgggtct gcagtggtga tcagtagggc 2701 agtcaaacgt atgttcggga cccacacaaa ccagccggcc ctggagggca aacccaagga 2761 acacaactgc agagtccacc gtgctgaaag ggaaggccat ggacctattg ggcatgacgg 2821 tatcatagaa cgatacggcc tgtgtgagag cgaccaggat gaggagaaga tcgtgatgga 2881 agtgccaact gctgacaaag agggcaaaaa taaaggcaaa aacaagaagg ggcgaggcag 2941 gaagaacaac tacaacgcct tttctaggcg aggcctgagt gatgaggagt atgaagaata 3001 taaaaaggtt agagaagaaa agggtggcaa ctacagcatc caagagtacc ttgaggaccg 3061 tcaacgttac gaagaagaac tcgctgaggt ccaagctggt ggagatggcg ggatcggtga 3121 gacggaagca gagatccgcc atcgggtctt ctataaatcc aaaagtggta tgcgcaaaca 3181 gcgccaagag gagcgccgac aacttgggct agttacgggt gctgaaatta ggaaacgcaa 3241 acccatagac tggacaccgc caaaaaatga ctggtcagaa gatactaggg aagtcaatta 3301 tgacgaacac atcagttttg aagccccacc ctctatttgg agtagggtcg taaaatttgg 3361 cagtggatgg ggcttttggg taagttcaac agttttcatt acaaccacac acgtcatacc 3421 accggatgct aaagaagttt ttggtgaaaa gctctcagac atagcaatac acagagttgg 3481 ggaattcaca caatttagat tctccaaaaa gatgagacct gacctcagtg gtatggtatt 3541 ggaagagggt tgcccagaag gaactgtatg cactataatg gtgaagagag actcaggtga 3601 actgctacca ttggccgtgc gcatgggagc tgtcgcatcc atgaagatac agggaaagct 3661 tatgcacggt caatctggca tgctgctaac tggtgcgaat gcaaagggaa tggatttagg 3721 caccattcct ggtgattgtg gagctccata tgtacacaaa agaggaaatg attgggtggt 3781 gtgtggagtg cacgcagccg caaccaagtc aggcaatact gttgtttgtg caatacagtc 3841 aggtgaaggt gaagccactc ttgagggggg tggacaaaac aaagggcatt atgcaggcca 3901 cccaatttta aggtatggta atgggccctc cctctctaca aaaaccaaat tttggaagtc 3961 aactccccaa cccctccccc ctgggaccta cgaaccagcc tacttaggtg ggcgtgaccc 4021 cagagtggat ggcggaccat cactccaaca ggtcctacgt gatcagctca agccttttgc 4081 tgaaccccgt ggtaggatgc cagagccaag cttgctagaa gcagctgtgg agaccgtcac 4141 aaacgtctta gagcaaacca tggacacgcc tgtgccatgg agttacagcg acgcctgcat 4201 gtcgcttgac aagactacta gctcaggctt tccacaccac aaacgcaaga acgatgactg 4261 gaatggcagt gcgtttgtgc gtgagcttgg tgaacaggca gcccatgcca acaacatgta 4321 tgaattaggc aaatcagtca aaccagttta cactgcagca cttaaagatg aattggtgaa 4381 acccgaaaaa gtgtatacaa agataaagaa aagattgctt tggggtgcag acctcggcac 4441 agttattcga gctgctcgag cctttggccc attctgtgaa gctataaaac cacatgtgat 4501 aaaattgccg attaaagtcg gcatgaatgc aattgaagat ggccccctca tatatgctga 4561 acatgctaag tataaatatc actttgatgc agactacaca gcttgggatt caacacagaa 4621 cagggagatt atgttagaat ccttcaacat catgtgtaag cttacagctg atccatcact 4681 ggctgccatt gtcgcacagg acttgttgtc cccgtcggaa atggacgtgg gggactacgt 4741 gattagtgtc aaggatggtc tcccctcagg attcccatgc acctcacaag tgaatagcat 4801 aaatcattgg atttataccc tgtgcgccct ttcggaagtc acaggtttgg cccctgatgt 4861 tctgcaatct caatcttact tttccttcta tggggatgat gaaattgtat caactgatgt 4921 ggaatttgac ccaacaaaac tcacccaagt gcttagagag tatggcttga aacccacgcg 4981 gcctgacaaa tcagaagggc ctatcatagt gaagcatcaa atagatgggt tagtttttct 5041 gaggcgcact atatcaaaag atgctgctgg ctaccaaggg cgcctggacc gcaactccat 5101 tgaaagacaa ttatggtgga cccggggccc aaaccacgat gatccctttg agacattgat 5161 accccatcaa caaagaaaga ttcaattgat ttccttactt ggtgaggctg cgcttcacgg 5221 agagaaattc tatagaaaga ttgccaacag agtcatacag gaagtcaaag aggggggcct 5281 tgagctctat ataccaggtt ggcaggccat attccgctgg atgcgtttcc atgacttgag 5341 cttgtggaca ggagatcgca atctcctacc cgattatgta aatgatgatg gcgtctaagg 5401 acgccccctc aaacatggat ggcactagtg gtgccggtca gctggttcca gaggttaatg 5461 cagctgaacc cctacccctt gagccggtgg tgggtgccgc aactgcggtg gccactgctg 5521 ggcaagttaa tttaatagac ccctggatca tgaataattt tgtccaagcc cctgagggcg 5581 aattcactat ctcccctaac aatacccctg gagatattct atttgatttg caattgggac 5641 cacatcttaa tccttttctt caacatctgt cccaaatgta taatggttgg gtgggaaaca 5701 tgagagttag agtcatgctc gcaggaaatg cgttcactgc tggtaaaatc ataatttgtt 5761 gtgtcccacc tggctttgca tcccaaaata tatcaattgg acaagccaca atgttcccac 5821 atgttatagc tgatgtgaga gtattagaac ctattgaaat cccccttgat gatgtacgca 5881 atgtcttgtt tcacaccaat gaaagccgcc caactatgcg gttactctgt atgctgtaca 5941 cacccctccg cgctggaggc gcttcatcag gcacggaccc ttttgtcatt gcaggtcgtg 6001 tcctaacctg cccttcccct gatttcaatt ttctgttcct cgtacctcct agcgtggaac 6061 agaagactag gcaattgact gtacccaata tacccttgaa caatttggcc aactccagag 6121 tgcctgcaat gataaataag atgacagtct ccactgatca aagtcaggta gtccagttcc 6181 aaaatggtcg ttgcacactc gaggggcaac ttttgggcac aacccctgtc tcagctagtc 6241 aagtggcccg catacgcggt aaagttttct ccactgcatc tgggaaaggg ctcaatttaa 6301 ctgaattgga tgggaccccc tatcatgcat tcgagagccc agcccccctt ggttttcctg 6361 acataggagc ttgtgattgg catgtgtcaa ctttcaaggt ggatcaaaat ctttcagggg 6421 accccatgtc caggctagat ataaaacaaa atgccccgtt tgcaccacat cttggttcca 6481 ttgaattcac ctctgaccag gaaccaaccg gggatcaatt gggcacacta gcttgggtct 6541 ccccttccac tagtggagct agggtcgatc cttggaaaat tccatcatat ggttcaactg 6601 taactgagtc cactcacctg gcaccaccta tctttccgcc aggttttggt gaagccatag 6661 tctatttcat gtcagacttt cccattgtgt caggcaacac tgctcaagtt ccctgtacct 6721 tacctcaaga atttgtttca cactttgtgg aacaacaggc accaattcga ggtgaagctg 6781 ccctattgca ttatgtagat ccagacaccc accgtaattt gggagagttc aaattgtacc 6841 ctgatgggtt cattacctgt gtgccaaata caggcggtgg cccccaaaac cttcctataa 6901 atggggtttt tgtcttttct tcttgggttt ctagatatta ccaattaaag cctgtgggaa 6961 cagccggtcc ggccaggagg cttggtgtga gaagggtata atggctcaag ccattatagg 7021 agcaattgcc gccaccgctg ctggcagcgc agtgggggca ggtatccaag ctggcacaga 7081 agcagccctg caatatcaga gatttcaaca agatctcacc ctacaggaga actcttttaa 7141 acatgatgag agaatgttgg gtttacaaat tgagggatct aatgctttat tacaaaagaa 7201 tctttccact cgctataacc tattagttgg tgcaggtctt tcttcggctg atgctgcaag 7261 gtctatcgtt ggggcccctg tgacaaaaat tgtggattgg aatggggtga ggattgccgc 7321 ccctacgtcc actgccacca ctctccgatc tggcaatttt atgagcatac cagtcacgcc 7381 gagaaaggag tcccaaaatc tgtcagcacg ttctgtaggt cttactaatc ctaactatga 7441 ctcatctact atgatctcta gaacaaccca gtgggtggag tcacaaaatt cagctagaaa 7501 tttatcacct tttcatagct cagccctaag gaccacatgg gtaactcctc ctggctctac 7561 ttctacttca actttttcca ctgtctcttc ggtgccacgg ttctttaaca ccgagcgcct 7621 tcccttgttc gcaaataata ggaagtag //