Typing tool
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Typing tool
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Complete norovirus genomes
| KX907727 | GII.4 Sydney | |
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| GII.P16 |
ORF1: 6..5105
ORF2: 5086..6708
ORF3: 6708..7514
LOCUS KX907727 7514 bp RNA linear VRL 07-NOV-2016
DEFINITION Norovirus Hu/USA/2015/GII.P16_GII.4_Sydney/CA3477, partial genome.
ACCESSION KX907727
VERSION KX907727.1
KEYWORDS .
SOURCE Norovirus Hu/USA/2015/GII.P16_GII.4_Sydney/CA3477
ORGANISM Norovirus Hu/USA/2015/GII.P16_GII.4_Sydney/CA3477
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7514)
AUTHORS Collins,N., Vinje,J. and Aswath,K.
TITLE Direct Submission
JOURNAL Submitted (28-SEP-2016) NCIRD/DVD/GRVLB, CDC, 1600 Clifton Rd NE,
Atlanta, GA 30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 8
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7514
/organism="Norovirus
Hu/USA/2015/GII.P16_GII.4_Sydney/CA3477"
/mol_type="genomic RNA"
/strain="Hu/USA/2015/GII.P16_GII.4_Sydney/CA3477"
/host="Homo sapiens"
/db_xref="taxon:1914545"
/country="USA"
/collection_date="13-Nov-2015"
/note="genotype: GII"
CDS 6..5105
/note="ORF1"
/codon_start=1
/product="polyprotein"
/protein_id="APA31969.1"
/translation="MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP
KQPAPRDEPQKPPRPPTPELVKRIPPPPPNGEGEEEPVIRYEVKSGISGLPELTTVPQ
PDVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAA
ISMARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLN
DSWLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLI
GKIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGP
EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWF
FPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRL
STKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAR
EVARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELAD
TCPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEV
EKAKRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIA
RASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVK
TMEELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHH
LKHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEE
APKSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV
TGSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSP
SLFITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEG
TVATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGD
CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILG
PGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFW
NGETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDL
STMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTKLSPDIVQANSMFSFYGDDEIVSTDIKLDPEQLTAKLK
EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP
NHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
CDS 5086..6708
/note="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="APA31970.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKAIVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
CDS 6708..7514
/note="ORF3"
/codon_start=1
/product="hypothetical protein"
/protein_id="APA31971.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGPSNKSS
SSSTATSVYSNQTISTRLGSTAGSGTSVSSLPSTARTKSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 ggtgaatgaa gatggcgtct aacgacgcta ccgttgccgt tgcttgcaac aacaacaacg
61 acaaggaaaa atcttcaggt gaaggcttat tcacaaatat gtcttccacc ttaaagaaag
121 ccctcggggc taggcccaaa cagcctgccc cgagagacga accacaaaag cccccaagac
181 caccaactcc cgagttggtc aagaggatac cccctcctcc acctaatggc gaaggagaag
241 aagaaccagt cattaggtat gaggttaaga gtgggatctc tggcctgccc gagctcacaa
301 cagtccccca accggacgtg gccaacacag cattcagtgt tccaccactg agcttgagag
361 aaaacaggga ggccaaggaa ccgctaacag gggcaatatt agagatgtgg gatggagaga
421 tataccacta tggcctgtac gtggagaaag gcttagtgtt gggtgtgcac aaaccacctg
481 cagccataag catggcaaga gtggagttga cgccgctgtc attgtactgg cgtgtggtgt
541 acactcccca atacctcatc tcccctgaaa ctctcaggag gctcaacgga gaggcgttcc
601 cttacaccgc ctttgacaac aactgctatg ccttttgctg ctgggtgtta gacctcaatg
661 actcatggct tagcaggagg atggtgcaaa gaacaacggg cttcttcaga ccttaccaag
721 agtggaacag aaaacccctg cctaccatgg atgactccaa aattaagaag gtagcaaata
781 tattcctatg ttcattgtcc acactattca ccagacccat aaaagacctc ataggaaaaa
841 ttaaaccatt aaacatattg aacatcctgg caacgtgtga ctggacgttt gccggaatag
901 tggagtctct gatattactt gccgaactct tcggagtttt ctggacaccc ccagatgtgt
961 ctgctatgat cgctccctta ctcggggact acgagttgca agggccagaa gacctcgccg
1021 ttgaactcgt acctgtggta atgggaggga ttggtttggt gttgggattc accaaagaga
1081 aaattggcaa aatgttgtcc tcagcagcat caacactcag ggcttgcaaa gatcttggtg
1141 cctatggctt agagatactc aaattggtca tgaagtggtt cttcccaaag aaagaggagg
1201 ccaatgagct agccatggtg agggccatag aggatgccgt actagatctt gaggcaatag
1261 aaaataacca catgacaacc ctgttgaaag acaaagacag cttagcaaca tacatgaaaa
1321 cactggacat ggaggaggag aaagccagaa ggttgtccac aaaatctgca tcccctgaca
1381 tagttgggac aatcaacgcc ctgctggctc gaatagcagc ggccaggtca ttagtccaca
1441 gggccaagga agagctgtct agcaggataa gaccagtagt tgttatgata tctggcaaac
1501 caggaatagg caaaactcat ctggccaggg aggtggcaag aaaggtggca tccactctca
1561 caggggatca aagagtcgga ctcataccaa gaaacggtgt ggaccattgg gatgcataca
1621 aaggtgagag agtcgtgctg tgggacgact atggcatgag taaccccatt catgatgctc
1681 ttcgcataca agaattggct gatacgtgtc cccttacctt aaattgtgac agaattgaaa
1741 ataagggaaa agtttttgac agtgaagtca taataattac aacaaacctt gccaatccag
1801 ccccacttga ttatgtcaac tttgaggcct gttccaggag aattgatttc ctggtgtacg
1861 ctgaggcacc agaagtagaa aaggcaaaac gggactttcc tggtcagcca gatatgtgga
1921 aggacgcctt caagtcggac ttctcacaca tcaagctaca gcttgcacct cagggcggct
1981 ttgacaagaa tggcaacacc ccacatggga aaggagtgat gaagaccctc actaccggtt
2041 ctctgattgc ccgtgcgtca ggcctactgc atgagaggat ggatgaattt gaactccaag
2101 gtcccacaat caccaccttc aatttcgacc ggaacagaat cacagcattc agacaattgg
2161 ctgcagaaaa caagtatgga ttggtggata ccatgaaagt tggcaatcaa ctaaaaggag
2221 tgaaaaccat ggaagaactc aaacaagcaa tcaggaatgt gaccatcaag aggtgccgga
2281 tcatctacgg tggctccacg tatgaccttg aatctgatgg caagggcaaa gttttggtgg
2341 aaaaggtcaa gaacacctct gtacagacca acaacgagtt ggccggggcc ctgcaccatc
2401 tcaaacacgc ccgaatcagg tactatgtca aatgtgtgca agaagcagtc tattccatca
2461 tacaaattgc cggcgctgcg tttgtcacca cgcgcattgc acgccgcatg aacatacaag
2521 aactctggtc gaagccacaa ttagatcaaa atgaatcaga aactaaggaa gaggccccca
2581 agtcagaaga tgacgagttc atcatatctt ctaaggacat caaggaggaa ggaaagaagg
2641 gcaaaaacaa aactggccgt ggcaagaaac acactgcatt ctccagcaag ggcttgagcg
2701 atgaggagta tgacgagtac aagaggataa gagaagagag aaatgggaag tactctatag
2761 aggagtacct tcaagataga gacaggtact atgaggagct cgccattgcc aaggccacgg
2821 aagaagactt ctgtgaagag gaggagatca aaatccgtca gagaattttc cgtcccacca
2881 ggaaacaaag aaaggaagag agggccacat tagggctagt aacaggttca gaaatcagaa
2941 aaagaaaccc tgatgacttc aaacccaaag ggaagctgtg ggccgatgac aacagaagtg
3001 ttgactacaa tgagaaactg gactttgagg cccccccaag catatggtct aggattgtga
3061 gctttggttc tggctggggc ttctgggtat caccaagcct gttcataaca tcaactcatg
3121 tgatccccgc aggcataaca gaagcatttg gagtccccat caaacaaatt cagatccaca
3181 aatcaggtga attttgccga ttcagattcc caaaaccaat tagaccagat gtgacaggaa
3241 tgatcttgga agaaggtgcg cctgaaggca ccgtggcaac tgtgctcatc aaacgcccca
3301 ccggagagct catgcctctt gcagccagaa tgggaacaca cgcaaccatg aaaattcaag
3361 gccgcatggt tggcggacag atgggtatgt tgctcactgg atcaaatgct aaaggaatgg
3421 atttgggaac aactcctggt gactgtggct gtccttacat ctataaaagg ggcaatgact
3481 atatagtcat tggggtgcac actgcagcag cccgtggtgg aaacaccgtt atctgtgcca
3541 cacagggaag tgagggtgag gcaactcttg agggtggaga tgacaaagga acatactgtg
3601 gggcacccat tctaggccct gggggtgcac caaaattgag caccaaaacc aaattttgga
3661 ggtcatcgaa cacgcccctt ccaccaggga catatgagcc tgcctacctc ggtggccgtg
3721 atccgcgtgt taagggtggg ccctccttgc agcaggtaat gagagaccag ttgaagccat
3781 tcactgaacc caggggcaaa cctccaagac caagtgtatt ggaagcagcc aaacaaacca
3841 ttatcaacgt cctcgaacaa accctggatc ctccacaaaa atggacatac gcacaggcgt
3901 gtgcctcact tgacaaaacc acctccagcg ggcatcccca tcacgtccga aagaatgaat
3961 tctggaatgg tgagaccttc actggtaaat tggcagacca agcatcaaaa gcaaacctaa
4021 tgtttgagga agggaaacac atgacaccag tgtatacagc agcactcaag gacgagctag
4081 tcaagactga gaaaatctat ggaaagatca agaagagact gctctggggc tctgacttgt
4141 ccaccatgat ccggtgcgct aggtcatttg gtgggctcat ggacgagatg aaggcacact
4201 gcatatcact cccagtacga gttggcatga atatgaatga agatggccca ataatatttg
4261 agaaacattc cagatacaaa taccactatg atgcagacta ctctcgttgg gattcaacac
4321 aacagagggc agtgctagca gcagccttgg aaatcatggt cagattctct gcagaaccac
4381 aattggcaca aatagtcgct gaggatctgc tggcccctag tgtagtagat gtaggagact
4441 ttaaaatcac aataaatgaa gggctcccat ctggtgtgcc atgcacttct caatggaact
4501 ccatcgcaca ctggctgcta actctctgtg ccttgtctga agtcaccaaa ctgtcccctg
4561 acattgtaca agcaaattcc atgttctcat tttacggtga tgacgagatt gtcagcaccg
4621 acataaaatt ggaccctgaa cagttaaccg ccaaattgaa ggagtacggc ctgaaaccaa
4681 cccgcccaga caagaccgag ggacccctga tcatcagtga agatttgaac ggactcactt
4741 tcctccgaag gacggtgact cgtgacccag ctggctggtt tggaaaactg gaccaaagct
4801 caattttgag gcagatgtac tggactagag gaccaaatca tgaagacccc aatgagacaa
4861 tgatacccca ttctcaaaga cccatacagc tcatggcact gcttggtgaa gcctctcttc
4921 acggaccctc tttctacagt aaaatcagta aattggtcat aactgaactc aaagaaggtg
4981 ggatggactt ttacgtgcca aggcaggaac ccatgttcag gtggatgagg ttttctgact
5041 tgagcacgtg ggagggcgat cgcaatctgg ctcccaattt tgtgaatgaa gatggcgtcg
5101 agtgacgcca acccatctga tgggtccgca gccaacctcg taccagaggt caacaatgag
5161 gttatggctt tggagcccgt tgttggtgcc gctattgcgg cacctgtagc gggccaacaa
5221 aatgtaattg acccctggat tagaaataat tttgtacaag cccctggtgg ggagtttaca
5281 gtatccccta gaaacgctcc aggtgaaata ctatggagcg cgcccctagg ccctgaccta
5341 aatccctacc tatcccattt ggccagaatg tacaatggtt atgcaggtgg ttttgaagtg
5401 caggtaattc tcgcggggaa cgcgttcacc gccgggaaga tcatatttgc agcagtccca
5461 ccaaattttc caactgaagg cttaagtcct agccaggtca ctatgttccc ccatataata
5521 gtggatgtta gacaattaga acctgtgctg attcccttac ccgatgtcag gaataatttc
5581 tatcattaca atcagtcaaa tgatcccact attaagttga tagcaatgtt gtatacacca
5641 cttagggcta ataatgctgg ggatgatgtt ttcacagttt cgtgccgagt tctcacgaga
5701 ccatcccccg attttgattt catattttta gtgccaccca cagttgagtc aagaactaaa
5761 ccattctctg tcccagtttt aactgttgag gagatgacca attcaagatt ccccattcct
5821 ttggaaaagt tgttcacggg ccccagcagt gcctttgttg ttcaaccaca aaacggcagg
5881 tgcacaactg atggcgtgct tctaggcacc acccaactgt ctcctgtcaa catctgcacc
5941 ttcagagggg atgtcaccca catcacaggt agtcgcaact acacaatgaa tttggcttct
6001 caaaattgga acaactatga cccaacagaa gaaatcccag cccctctagg aactccagat
6061 tttgtgggga agatccaagg catgctcacc caaaccacaa ggacagatgg ttcaacacgc
6121 ggccacaaag ctatagtgta cactgggagc gccgactttg ctccaaaact gggtagagtt
6181 caatttgaaa ctgacacaga ccatgatttt gaagctaacc aaaacacaaa gttcacccca
6241 gtcggtgtca tccaagatgg tagcaccacc caccgaaacg aaccccaaca gtgggtgctc
6301 ccaagttact caggcagaaa tactcacaat gtacatctgg cccctgctgt agcccccacc
6361 tttccgggtg agcaacttct cttcttcaga tccaccatgc ccggatgcag cgggtacccc
6421 aacatggatt tggactgtct gctcccccag gaatgggtgc agtacttcta ccaagaggca
6481 gccccagcac aatctgatgt ggctctgcta agatttgtga atccagacac aggtagggtt
6541 ttgtttgagt gcaagcttca caaatcaggc tatgttacag tggctcacac tggccaacat
6601 gatttggtta tcccccccaa tggttacttt aggtttgatt cctgggtcaa ccagttctac
6661 acgcttgccc ccatgggaaa tggaacgggg cgtagacgtg cagtataatg gctggagctt
6721 tctttgctgg attggcatct gatgtccttg gctctggact tggttccctt atcaatgctg
6781 gggctggggc catcaaccaa aaagttgagt ttgaaaataa cagaaaattg caacaagcat
6841 ccttccaatt tagcagcaat ctgcaacagg cttcctttca acatgataaa gagatgctcc
6901 aagcacaaat tgaggccacc aaaaagctac aacaggaaat gatgaaagtt aagcaggcaa
6961 tgctcctaga gggtgggttc tctgagacag atgcagcccg cggggcaatc aacgccccca
7021 tgacaaaagc tttggactgg agtgggacaa ggtactgggc tcccgatgct aggactacaa
7081 catacaatgc aggccgcttt tccacccctc aaccatcggg ggcactgcca ggaagagcta
7141 atcttaggga tgctgtccct gctcggggac cctccaacaa atcttctagc tcttctactg
7201 ccacctctgt gtattcaaat caaactatct caacgagact tggttctaca gctggttctg
7261 gaaccagtgt ctcgagcctc ccgtcaactg caaggactaa gagctgggtt gaggatcaaa
7321 gtaggaattt gtcacctttc atgagggggg cccacaacat atcatttgtc accccaccat
7381 ctagcagatc ctctagccaa ggcacagtct caaccgtgcc taaagagatt ttggactcct
7441 ggactggcgc tttcaacacg cgcaggcagc ctctcttcgc tcacattcgt aagcgagggg
7501 agtcacgggt gtaa
//