Typing tool
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Typing tool
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Complete norovirus genomes
| KX752057 | GII.6 | |
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| GII.P7 |
ORF1: 1..5094
ORF2: 5075..6727
ORF3: 6727..6952
LOCUS KX752057 6952 bp RNA linear VRL 24-MAR-2017
DEFINITION Norovirus GII/Hu/China/2009/GII.P7-GII.6/Beijing non-structure
protein and VP1 genes, complete cds; and VP2 gene, partial cds.
ACCESSION KX752057
VERSION KX752057.1
KEYWORDS .
SOURCE Norovirus GII/Hu/China/2009/GII.P7-GII.6/Beijing
ORGANISM Norovirus GII/Hu/China/2009/GII.P7-GII.6/Beijing
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 6952)
AUTHORS Cai,H., Yu,Y., Jin,M., Pan,Y., Yan,S. and Wang,Y.
TITLE Cloning, sequencing and characterization of the genome of a
recombinant norovirus of the rare genotype GII.P7/GII.6 in China
JOURNAL Arch. Virol. (2017) In press
PUBMED 28299482
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 6952)
AUTHORS Wang,Y., Yu,Y. and Cai,H.
TITLE Direct Submission
JOURNAL Submitted (17-AUG-2016) College of Food Science and Technology,
Shanghai Ocean University, No. 999, Huchenghuan Rd, Shanghai
201306, China
FEATURES Location/Qualifiers
source 1..6952
/organism="Norovirus
GII/Hu/China/2009/GII.P7-GII.6/Beijing"
/mol_type="genomic RNA"
/isolate="GII/Hu/China/2009/GII.P7-GII.6/Beijing"
/host="Homo sapiens"
/db_xref="taxon:1938623"
/country="China"
/collection_date="May-2009"
/note="genotype: GII.P7-GII.6"
CDS 1..5094
/codon_start=1
/product="non-structure protein"
/protein_id="APX56330.1"
/translation="MKMASNDATAALGSQNSVNDSINTTPSNKEEVGAFSNIKVGIKK
MLGAVPKGTKAPNSDQHCPTVKIGPKTLTVPPEPPNGEDTVQFDARSETVTGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLVSDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAERIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFGRIRPVVVMISGRPGVGKTHM
ARHLAKNIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRIDFLVYAESP
EIEKVKRDFPGQPDMWKDYFKQDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERKDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKN
VKTLEDLKIALRDVKFNECEIIYRNSRYRVSSNGKGSVSVDKVEDHTSQTANEVGSAL
LRLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQEASEPEK
EVSQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRGRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGVKELFGVEVKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMGLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGRDPRVEKGPSLQQVMRDQLKPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVKKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
CDS 5075..6727
/codon_start=1
/product="VP1"
/protein_id="APX56331.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAAIDMLYTDPNESIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLISQTARAVDSTDSPQRARDHPLHVQVKNLDGTQYDPTDDIPAVLG
AIDFKGTVFGVASQRDVSGTQEQGHYATRAHEAHIDTTDPKYAPKLGTILIKSESPDF
NTNQPIRFTPVGMGDNNWRQWELPDYSGRLTLNMNLAPAVSPSFPGERILFFRSIVPS
AGGYGSGYIDCLIPQEWVQHFYQEAAPSQSAVALVRYVNPDTGRNIFEAKLHREGFLT
VANSGNNPIVVPPNGYFRFEAWVNQFYTLAPMGSGQGRRRAQ"
CDS 6727..>6952
/codon_start=1
/product="VP2"
/protein_id="APX56332.1"
/translation="MAGAFFAGLAGDVVSNGIGSLINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVL"
ORIGIN
1 atgaagatgg cgtctaatga cgctaccgct gcccttggca gtcaaaactc tgtcaatgac
61 agtatcaaca ccaccccttc aaacaaagaa gaggttggtg cattctccaa catcaaagtt
121 ggaattaaga aaatgctggg tgccgtacct aagggtacta aagcacccaa cagtgaccag
181 cactgtccaa cagtcaagat cgggcccaaa acactaacag tcccccctga acccccaaat
241 ggtgaggaca ccgtacagtt tgatgcgagg tctgaaaccg taactgggct accggacttg
301 acaacagtac aaaatgaaca cgaaaacacc ccatacaccg tccctccact gagtgagagg
361 gaacacagac cagccactga gccgcttcct ggcacaatat tggagatgtg ggatggtgaa
421 ttctaccatt actccgtgta cgtcagcggt ggcaaggctc tgggggtcca caaacccccg
481 gcagctataa gcctcgcgac gatagaactc acccccatat ctctatactg gagacccgtt
541 tacaccccca actacctggt ctgcccagac acgctgaaag gtctcgctgg tgaaaagttc
601 ccctacacgg ctttcagcaa caactgctac aatttctgtt gctgggtgct tgagctcaat
661 gacacgtggc tcagcagaag aagcatctcc agaaccaccg gcttcttcaa accgtaccag
721 tcttggaaca ggaagcctct cccaaccgtt gacgatggaa agatcaaaaa ggtggccaac
781 gcgatcctct gtgcactcgg ctcgctgttt tcaaagccaa tcaaggacct gttaggcaag
841 ctcaaaccat tgaacttgct acacctgctc gcgtcgtgtg attggacgtt tgcgggtata
901 gtggagacag tcatcttaat ggcggaactt ttcaacgtct tttggacccc gccagatgtc
961 tctaatttca tagcctccct ggtaagtgat tttgaattgc agggacctga ggacttggca
1021 gtggagcttg ttcctgtggt catgggtggt ataggaatgg ttctcggctt cacagctgaa
1081 aggataggtc gtatgctgtc gtccgctgca tcaacactgc gggcgtgcaa agacttaggg
1141 aactatgccc ttgacatact aaaattggtc atgaagtggt tcttcccaaa gaaagaggag
1201 aaagctgaga tggaaacctt gagggcgatc gaggatgccg tcctagatat ggaggctata
1261 ggtaacaacc atctcacgac cctcctcaag gataaagaca gtctcacggc cttcatgaaa
1321 accctggatc tagaagaaga gaaggcaagg aagctatcca ccaagtcatc ctcgccggac
1381 atcgtcggca ccatcaatgc catactggct agaatagctg ccgctagatc tctcctgcac
1441 aaggccaaag aagagatgtt cggcaggatc agaccagtgg ttgtcatgat ctcaggcaga
1501 cctggcgttg gcaaaaccca tatggcaagg catttggcta aaaacatcgc caacaccatg
1561 agtggtgacc aaagagtcgg gctcgttccg cgcaacgggg tcgaccactg ggacgcctac
1621 aggggagaga gggtagtctt gtgggatgat tatggaatgg ggaaccctgt caaagatgct
1681 ttaacactac aagaattggc tgacacatgt ccagtcactc taaattgtga taggatcgag
1741 aacaagggga aaatgttcga cagtgatgtc atcataatca cgaccaatct agtcaaccct
1801 gcacctctcg attatgtgaa cttcgaggcg tgctctagaa gaattgattt cttggtctat
1861 gcagagtcac cagaaattga gaaggttaag agagatttcc ctggtcaacc tgacatgtgg
1921 aaggactatt tcaaacaaga cttttcccac ataaagctaa ccctagcccc ccaaggcgga
1981 tttgacaaga atggtaacac cccgcatggt aagggtacca tgcgatccct cacccagggg
2041 tccctgaccg cgagggttgc aggccttgtt catgagagga aggatgagtt ccagctacaa
2101 gggaacgacc tccagacata taactttgac accaacaggg tctctgcgtt caggaaactg
2161 gctgcagaca acaagtatgg aatcatggaa acaatgagag tgggtgcagc gctcaagaat
2221 gtcaagactt tggaagatct gaaaatcgcc ttgagagatg taaagttcaa tgagtgtgaa
2281 ataatctaca ggaactctag gtatcgagtc tcttccaacg gcaagggctc tgtttctgtt
2341 gacaaagttg aggatcatac atctcagact gcaaatgaag tgggatcagc actcctcaga
2401 cttagacaag caagggccag atattatgtc agctgcttcc aagacctcgt ctacactctc
2461 atacaggttg ctggggcatc attcgtcgtt aacaggatct ccaaaaggtt ctgctgggag
2521 aggtgggtta aaccaaccga aacccaagaa gcgagtgagc ccgaaaagga agtgtctcaa
2581 ggcaggtggg agattgagcc caaggacaca gaaccagaag gcaagaaggg taagaacaag
2641 aaagggagag gtaagaaaca cacagctttc tccagcaaag gcctgagtga tgaagagtat
2701 gatgagttca agagaatcag agaagagagg aacggaaaat actccattga ggaatacctg
2761 caagaccggg gccgttacta tgaagaagtg gcagttgccc gagcaacaga agaggacttt
2821 tgtgaagagg aagaagccaa gataagacag agaatcttcc gcccaacaag gaagcaaaga
2881 aaggaggaaa ggggggtgct tggcttagtc actggctcag atatcaggaa gaggagacca
2941 gacgattttc aaccaaaagg taacctatgg gcagatgaca ctaggagtgt ggattacaat
3001 gagagacttg actttgaggc tcccccaagc gtctggtcaa gaatagtccc actgggtact
3061 ggttggggct tctgggtttc atctaatctc ctgatcacaa caacacacgt cctgcccaag
3121 ggggtcaagg aactctttgg ggttgaagtc aaacaaatcc aaatccacaa gtctggagag
3181 ttttgcaggt ttaggttccc aagaccaatc aggccagatg ttacagggct cgtgttggag
3241 gaaggtgctc cagaaggcac tgtctgttct atactcgtga agagacccac aggtgagatg
3301 atccccctag cagtgaggat gggcacgcac gcatccatga aaatacaggg taggaccgtc
3361 ggtggccaga tgggaatgct tctcacaggg gcgaacgcaa agaacatggg tcttggcacc
3421 ggtcctggtg actgcggttg cccttacatc tataagcgtg gcaacgacat agttgtcgcg
3481 ggtgtccaca ccgcagcagc ccgggggggc aacactgtta tctgtgcaac tcaagggcaa
3541 gatggggagg cagtccttga aggaaatgaa aaccttggca cttactgtgg tgccccaatt
3601 ttgggccctg gtaaagcgcc caaactcagc acaaaaacca aattttggcg ctcatcacca
3661 gatgccctac ctcctggtac atacgaacct gcttacctgg ggggtaggga tcccagagtg
3721 gaaaaagggc cctccctaca gcaagtcatg agagaccagc tgaaaccctt cacagagccc
3781 aggggcaaac cacctagacc agcagtttta gaagaagcta aaaagacagt gatgaatgtt
3841 ctagaacaga ccattgaccc tgctaagcca tggacctact cacaagcatg tgcttcactg
3901 gacaagacca cctctagtgg cagcccccac catgtcaaga aaaatgacca ctggaatggg
3961 gagtctttta ctggtcccct tgcggaccaa gcatccaaag ccaacctcat gtatgaacag
4021 gcaaagcatg tgcagcccgt gtacacggcc gcgctcaaag atgagcttgt taagactgat
4081 aagatctaca agaagataaa gaagaggctt ctatgggggt cagaccttgg tacgatgatc
4141 aggtgtgcca gggcttttgg cggccttatg gacagtatga aagcaagttg catagctctt
4201 ccatgtaggg tggggatgaa catgaatgag gatggcccta tcatatttga caaacactcc
4261 aagtataggt atcactatga tgctgactat tctaggtggg actcaaccca gcaaaggagc
4321 attctttccg ccgctatgga ggtgatggtg aggttctctg ctgaaccaga attggcacaa
4381 gtggttgcag aggacctttt ggcgcctagc cagctagatg ttggcgattt tgtcatctca
4441 gtccaggagg gtctgccatc aggagtccca tgtacgtcac aatggaattc gatagcgcac
4501 tggattctaa ctctgagcgc aatggcagaa gtttcaggtc tttcaccaga cgttgtccaa
4561 gcccactcct gtttttcatt ttatggcgac gatgagatcg ttagcactga catcaacctt
4621 gaccccatga aattgacaca gaaactcagg gagtatggtc tggtccccac ccggcctgac
4681 aagactgaag gccccctcgt cataactgaa gacctcaccg gcctgacatt cctgcgtaga
4741 tcgattgcac gggatccagc tggatggttt ggaaaattgg atcaagactc aattctcaga
4801 caattatact ggacaagggg gcccaatcat gagaatccgt acgagagcat ggttccccac
4861 tctcagcgag ctacccagct catggccctt cttggcgagg cttcattgca tggtccccag
4921 ttttacaaga aagttagcaa gatggtcatc aatgagatta agagtggtgg tctggaattt
4981 tatgtgccca gacaagaggc catgttcagg tggatgagat tctctgacct cagcacatgg
5041 gagggcgatc gcaatcttgc tcccgagggt gtgaatgaag atggcgtcga atgacgctgc
5101 tccatcaaat gatggtgctg ccaacctcgt accagaggcc aacaatgagg ttatggcact
5161 tgaaccggta gtgggagcct caatcgcagc tcctgttgtc ggtcagcaaa atataattga
5221 cccctggatt agagaaaatt ttgttcaagc accacagggc gagtttactg tttcaccaag
5281 gaattcgccc ggtgaaatgc ttctaaatct tgaattgggc ccagaactta acccttactt
5341 gagtcatttg tcccgcatgt acaatgggta tgctggtggc atgcaggttc aggtggtcct
5401 agctgggaat gcgttcacag ctgggaagat catctttgcc gccgtgccac cacacttccc
5461 tgtggataat attagtgcag cccagataac tatgtgtccc catgtgattg ttgatgtgag
5521 acagcttgaa ccagtgcttc tgcccctccc tgatataagg aataggttct tccattacaa
5581 ccaggaaaac acccctcgga tgagactcgt ggccatgctc tacacgcctc taagggctaa
5641 ttctggtgag gacgtgttca ctgtgtcctg tagggttctg actcgccccg ctccagattt
5701 tgagttcaca tttttagttc caccaactgt tgaatcaaaa acaaagccct ttactctacc
5761 tatcctaact cttggtgagt tgtctaactc ccgttttccg gctgctatag atatgcttta
5821 tactgatccc aatgaatcaa tagttgttca gccccaaaat ggtaggtgca ctcttgatgg
5881 cacattgcaa ggcacaacac aattggtccc aacacagatt tgtgccttta ggggcaccct
5941 gatcagccag actgcgagag cggtcgattc aacagactcc ccccagagag cccgtgatca
6001 cccgttacac gtccaggtga agaacctaga tggcacacag tatgacccaa cagatgatat
6061 tcctgcggtc ctgggggcta ttgacttcaa aggtacagtg tttggagtgg ctagtcagag
6121 ggatgtctct ggaacacaag aacagggcca ttatgccacc cgagcccatg aagcacacat
6181 tgacacaact gacccaaagt atgcacccaa attaggcaca attcttatca aatctgaatc
6241 tcctgatttc aacacaaatc aacccattag gttcactcca gtgggcatgg gtgacaacaa
6301 ttggagacag tgggaattgc ctgactattc tggtagattg actttaaata tgaaccttgc
6361 ccccgctgtt tccccatctt ttcctggtga acgaatcctc ttcttcaggt ctatagtacc
6421 atcagctgga ggctacgggt ctggctatat agactgtctc ataccccagg agtgggtgca
6481 acacttctac caggaagcag caccttcaca atctgctgtt gcactggtca ggtatgttaa
6541 ccccgacact gggcgtaaca tttttgaggc caagttgcac agagaagggt tcctcaccgt
6601 ggccaattct ggaaacaatc ctattgtagt tccccctaat ggttatttta gatttgaggc
6661 ttgggttaac caattttata cacttgcccc catgggatct ggacaggggc gtagaagggc
6721 tcagtaatgg ctggagcctt cttcgcaggg ttagcaggcg atgtcgtgtc gaacggcatc
6781 ggttccctca tcaatgcagg tgctaatgca gttaatcaaa aggttgagta tgattttaat
6841 aagcaacttc agatggcatc attcaaacat gacaaagaga tgttacaatc acaggttttg
6901 gcaaccaaac aactgcagca ggaaatgatg aacataaggc aaggggtgtt ga
//