Typing tool
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Typing tool
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Complete norovirus genomes
| KX592172 | GII.17 | |
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| GII.P17 |
ORF1: 1..822
ORF2: 803..2425
ORF3: 2425..3204
LOCUS KX592172 3291 bp RNA linear VRL 04-JUL-2017
DEFINITION Norovirus Hu/GII.P17_GII.17/PA39/2016/ITA RNA-dependent RNA
polymerase (ORF1) gene, partial cds; and major capsid protein
(ORF2) and minor capsid protein (ORF3) genes, complete cds.
ACCESSION KX592172
VERSION KX592172.1
KEYWORDS .
SOURCE Norovirus Hu/GII.P17_GII.17/PA39/2016/ITA
ORGANISM Norovirus Hu/GII.P17_GII.17/PA39/2016/ITA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3291)
AUTHORS Giammanco,G.M., Medici,M.C. and Martella,V.
TITLE Emergence of norovirus GII.17 as a major epidemic strain in the
winter season 2015-2016, Italy
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3291)
AUTHORS Giammanco,G.M., Medici,M.C. and Martella,V.
TITLE Direct Submission
JOURNAL Submitted (21-JUL-2016) Unit of Microbiology and Virology,
Departement of Clinical and Experimental Medicine, University of
Parma, Viale A. Gramsci, 14, Parma, Parma 43126, Italy
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3291
/organism="Norovirus Hu/GII.P17_GII.17/PA39/2016/ITA"
/mol_type="genomic RNA"
/isolate="PA39/2016"
/bio_material="stools"
/db_xref="taxon:2015591"
/country="Italy"
/collection_date="2016"
/collected_by="GM Giammanco"
/note="genotype: GII.P17_GII.17"
gene <1..822
/gene="ORF1"
CDS <1..822
/gene="ORF1"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="ASF87474.1"
/translation="HYDADYSRWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLS
PSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYS
FYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTR
DPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFY
SKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 803..2425
/gene="ORF2"
CDS 803..2425
/gene="ORF2"
/codon_start=1
/product="major capsid protein"
/protein_id="ASF87475.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAQNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSINLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 2425..3204
/gene="ORF3"
CDS 2425..3204
/gene="ORF3"
/codon_start=1
/product="minor capsid protein"
/protein_id="ASF87476.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVSAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 cactatgatg cagactactc ccgctgggac tccacacaac agcgggcagt gctggaagcg
61 gcacttgaaa tcatggtgag attttctgct gagccacagc tggcacaaat agtggcagag
121 gacctgctgt caccaagtgt ggttgatgtg ggcgatttca aaatcgctat caatgaaggc
181 ctaccatctg gcgtgccttg cacctcacaa tggaattcta ttgcccactg gttacttacc
241 ttgtgtgccc tttctgaagt gacaggatta ggtcctgaca tcatacaagc taactccatg
301 tactctttct atggtgatga tgagattgtg agcacagaca taaaattgga cccagagaaa
361 ttgaccgcaa agctcaaaga atatggcctt aaacccactc ggcccgacaa aactgagggg
421 ccgttggtga ttagtgagga cctgaatggg ttgactttcc tccgccgaac agtcacccgt
481 gatccagcag gctggtttgg aaagttggac caaaactcca tcctcaggca gttgtactgg
541 acaagaggac ccaaccatga agaccccagt gagaccatga taccacacgc acaaagacct
601 gtgcagctca tggcactact aggagaatcc tccctacatg gaccctcatt ttacagcaag
661 gttagcaaat tagtcatatc tgaacttaaa gagggaggaa tggattttta tgtgcccaga
721 caagagtcaa tgttcagatg gatgaggttc tcagatctaa gcacatggga gggcgatcgc
781 aatctggctc ccagttttgt gaatgaagat ggcgtcgaat gacgccgctc catctaatga
841 tggtgctgct ggtctcgtac cagagggcaa caacgagacc cttcccctag aaccagttgc
901 gggcgcagct atagccgcac ccgtcactgg ccaaaataac ataattgacc cctggattag
961 aacaaatttt gtgcaagcac aaaatggaga gttcacagtg tcacccagaa actctcctgg
1021 agaaatttta ttaaacttag agttgggccc tgatttgaac ccttatttgg ctcatttgtc
1081 aaggatgtac aatgggtatg ctggtggagt ggaagttcag gttctcctgg cagggaacgc
1141 gttcactgcc ggaaagatcc tcttcgccgc cgtcccgcca aatttcccag tggaattctt
1201 aagcccagcc cagatcacaa tgctcccaca tttaatagta gatgttagga ctcttgaacc
1261 aattatgatc ccactccctg atgttaggaa tacattcttt cattatagta accagcctaa
1321 cagccgcatg agattagtgg ctatgctcta taccccactc agatctaatg gctcaggtga
1381 tgatgtcttt actgtctctt gcagggtttt gactaggcct actcctgatt ttgagttcac
1441 ttatttagtg ccaccttctg ttgaatctaa aactaagcct ttttccttac ctattttaac
1501 cctttctgag ctcacaaatt cgagattccc agtccccatc gattcgcttt tcaccgccca
1561 gaataatgtg ttgcaggtgc agtgtcaaaa tggcaggtgt acacttgatg gtgagttaca
1621 aggcacaacc cagttgctcc catctggcat ctgtgcattc agaggacgag tgacagcaca
1681 aattaaccaa cgtgacaggt ggcacatgca actgcaaaac ctcaatggta caacatatga
1741 cccaactgat gatgtgccag ccccgctggg tacacctgac ttcaagggcg tcgtgtttgg
1801 gatggtaagc caaagaaatg tgggtaatga tgcgcctggc tcaaccagag cccaacaggc
1861 gtgggtttca acctatagcc cccaatttgt ccccaaatta ggttctatca atcttagaat
1921 tagtgataat gatgatttcc aattccagcc gacaaaattc acaccagtgg gcgtcaatga
1981 tgacgatgat ggccacccgt tcagacaatg ggaactacca aactattcag gggagcttac
2041 cttgaatatg aatcttgccc ccccagttgc tccaaatttt cctggtgaac aattgttatt
2101 cttcagatct ttcgtgccat gctcaggagg ttacaaccaa ggtattatag attgtcttat
2161 tccccaagaa tggatccaac acttctatca ggaatcagca ccctcccagt cagacgtggc
2221 cctaatcagg tatgtcaacc ccgatacggg acgtacactg tttgaagcaa aattgcacag
2281 atctggttac attactgtgg ctcactctgg agactatcct cttgttgttc cggctaatgg
2341 acactttaga tttgattctt gggtaaatca gttttactca ctcgccccaa tgggaactgg
2401 gaatgggcga aggagggctc agtaatggct ggggctttca ttgcaggatt ggcaggcgac
2461 atgctcacgt catctgtggg ctcccttgtg agtgcagggg caaacgccat caaccaaaag
2521 atagactttg aaaacaacaa acaactccag tctgcttcct ttcagcatga taaagagatg
2581 ctccaagcgc aggtgagggc aaccaagcag ctgcaatctg aaatgatagc cctaaaacag
2641 ggggttttgg ccgcaggcgg cttttccccc actgatgcag caaggggatc cattggtgca
2701 cccatgacaa aggtgcttga ctggtctggc actcgatact gggcgcccaa ttccacaaag
2761 acaactggct attcgggaca attcacctct tcacctgtgc atatgtctag cccaaatgct
2821 ccacaatcaa aacctgcaaa gcctaggtct ctagctcctt cctcttcttc tagcagtgtc
2881 tatagtatgt acactcaatc tactcattta acatctggct cttctagtaa tgcttcttct
2941 gcctccacaa aattgacaaa tttaagctct ggctcctctc aaaacagaac agcagagtgg
3001 gtaaatcaac agagaagtct tagccctttc atgagtggcg cacttaacat ctcacatgtc
3061 acgccaccct caagtagggc ttccagttct gggacggtct cgaccgtgcc caaggaagtt
3121 ttggactcct ggacgtctgc gtttaacaca cacagacagc cgctcttcgc acacctcaga
3181 gtgagggggg agtcacgtgt ttagtgaaaa gaaatgattg gctataatgt gatttctttc
3241 taaatttggc taatttgtat cttttaaaaa aaaaaaaaaa aaaaaaaaaa a
//