Typing tool
|
Complete norovirus genomes
KX592171 | GII.17 | ||
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GII.P17 |
ORF1: 1..822 ORF2: 803..2425 ORF3: 2425..3204LOCUS KX592171 3291 bp RNA linear VRL 04-JUL-2017 DEFINITION Norovirus Hu/GII.P17_GII.17/PA31/2016/ITA RNA-dependent RNA polymerase (ORF1) gene, partial cds; and major capsid protein (ORF2) and minor capsid protein (ORF3) genes, complete cds. ACCESSION KX592171 VERSION KX592171.1 KEYWORDS . SOURCE Norovirus Hu/GII.P17_GII.17/PA31/2016/ITA ORGANISM Norovirus Hu/GII.P17_GII.17/PA31/2016/ITA Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3291) AUTHORS Giammanco,G.M., Medici,M.C. and Martella,V. TITLE Emergence of norovirus GII.17 as a major epidemic strain in the winter season 2015-2016, Italy JOURNAL Unpublished REFERENCE 2 (bases 1 to 3291) AUTHORS Giammanco,G.M., Medici,M.C. and Martella,V. TITLE Direct Submission JOURNAL Submitted (21-JUL-2016) Unit of Microbiology and Virology, Departement of Clinical and Experimental Medicine, University of Parma, Viale A. Gramsci, 14, Parma, Parma 43126, Italy COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3291 /organism="Norovirus Hu/GII.P17_GII.17/PA31/2016/ITA" /mol_type="genomic RNA" /isolate="PA31/2016" /bio_material="stools" /db_xref="taxon:2015590" /country="Italy" /collection_date="2016" /collected_by="GM Giammanco" /note="genotype: GII.P17_GII.17" gene <1..822 /gene="ORF1" CDS <1..822 /gene="ORF1" /codon_start=1 /product="RNA-dependent RNA polymerase" /protein_id="ASF87471.1" /translation="HYDADYSRWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLS PSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYS FYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTR DPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFY SKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 803..2425 /gene="ORF2" CDS 803..2425 /gene="ORF2" /codon_start=1 /product="major capsid protein" /protein_id="ASF87472.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 2425..3204 /gene="ORF3" CDS 2425..3204 /gene="ORF3" /codon_start=1 /product="minor capsid protein" /protein_id="ASF87473.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 cactatgatg cagactactc ccgctgggac tccacacaac agcgggcagt gctggaagcg 61 gcacttgaaa tcatggtgag gttttctgct gagccacagc tggcacaaat agtggcagag 121 gacctgctgt caccaagtgt ggttgatgtg ggcgatttca aaatcgctat caatgaaggc 181 ctaccatctg gcgtgccttg cacctcacaa tggaattcta ttgcccactg gttacttacc 241 ttgtgtgccc tttctgaagt gacaggatta ggtcctgaca tcatacaagc taactccatg 301 tactctttct atggtgatga tgagattgtg agcacagaca taaaattgga cccagagaaa 361 ttgaccgcaa agctcaaaga atatggcctt aaacccactc ggcccgacaa aactgagggg 421 ccgttggtga ttagtgagga cctgaatggg ttgactttcc tccgccgaac agtcacccgt 481 gatccagcag gttggtttgg aaagttggac caaaactcca tcctcaggca gttgtactgg 541 acaagaggac ccaaccatga agaccccagt gagaccatga taccacacgc acaaaggcct 601 gtgcagctca tggcactact aggagaatcc tccctacatg gaccctcatt ttacagcaag 661 gttagcaaat tagtcatatc tgaacttaaa gagggaggaa tggattttta tgtgcccaga 721 caagagtcaa tgttcagatg gatgaggttc tcagatctaa gcacatggga gggcgatcgc 781 aatctggctc ccagttttgt gaatgaagat ggcgtcgaat gacgccgctc catctaatga 841 tggcgctgct ggtctcgtac cagagggcaa caacgagacc cttcccctag aaccagttgc 901 gggcgcagct atagccgcac ccgtcactgg ccaaaataat ataattgacc cctggattag 961 aacaaatttt gtgcaagcac caaatggaga gttcacagtg tcacccagaa actctcctgg 1021 agaaatttta ttaaatttag agttgggccc tgatctgaac ccttatttgg ctcatttgtc 1081 aaggatgtac aatgggtatg ctggtggagt ggaagttcag gttctcctgg cagggaacgc 1141 gttcactgcc ggaaagatcc tcttcgccgc cgtcccgcca aatttcccag tggaattctt 1201 aagcccagcc cagatcacaa tgctcccaca tttaatagta gatgttagga ctcttgaacc 1261 aattatgatc ccactccctg atgttaggaa tacattcttc cattatagta accagcctaa 1321 cagccgcatg agattagtgg ctatgctcta taccccactc agatctaatg gctcaggtga 1381 tgatgtcttt actgtctctt gcagggtttt gactaggcct actcctgatt ttgagttcac 1441 ttatttagtg ccaccttctg ttgaatctaa aactaagcct ttttccttac ctattttaac 1501 cctttctgag ctcacaaatt cgaggtttcc agtccccatc gattcgcttt tcaccgccca 1561 gaataatgtg ttgcaggtgc agtgtcaaaa tggcaggtgt acacttgatg gtgagttaca 1621 aggcacaacc cagttgctcc caactggcat ctgtgcattc agaggacggg tgacagcaca 1681 aattaaccaa cgtgacaggt ggcacatgca actgcaaaac ctcaatggta caacatatga 1741 cccaactgat gatgtgccag ccccgctggg tacacctgac ttcaagggcg tcgtgtttgg 1801 gatggtaagc caaagaaatg tgggtaatga tgcgcctggc tcgaccagag cccaacaggc 1861 gtgggtttca acctatagcc cccaatttgt ccccaaatta ggttctgtca atcttagaat 1921 tagtgataat gatgatttcc aattccagcc gacaaaattc acaccagtgg gcgtcaatga 1981 tgacgatgat ggccacccgt tcagacaatg ggaactacca aactattcag gggagcttac 2041 cttgaatatg aatcttgccc ccccagttgc tccaaatttt cctggtgaac aattgttatt 2101 cttcagatct ttcgtgccat gctcaggagg ttacaaccaa ggtattatag attgtcttat 2161 tccccaagaa tggatccaac acttctatca ggaatcagca ccctcccagt cagacgtggc 2221 cctaatcagg tatgtcaacc ccgatacggg acgtacactg tttgaagcaa aattgcacag 2281 atctggttac attactgtgg ctcactctgg agactatcct cttgttgttc cggctaatgg 2341 acactttaga tttgattctt gggtaaatca gttttactca ctcgccccaa tgggaactgg 2401 gaatgggcga aggagggctc agtaatggct ggggctttca ttgcaggatt ggcaggcgac 2461 atgctcacgt catctgtggg ctcccttgtg aacgcagggg caaacgccat caaccaaaag 2521 atagactttg aaaacaacaa acaactccag tctgcttcct ttcagcatga taaagagatg 2581 ctccaagcgc aggtgagggc aaccaagcag ctgcaatctg aaatgatagc cctaaaacag 2641 ggggttttgg ccgcaggcgg cttttccccc actgatgcag caaggggatc cattggtgca 2701 cccatgacaa aggtgcttga ctggtctggc actcgatact gggcgcccaa ttccacaaag 2761 acaactggct attcgggaca attcacctct tcacctgtgc atatgtctag cccaaatgct 2821 ccacaatcaa aacctgcaaa gcctaggtct ctagctcctt cctcttcttc tagcagtgtc 2881 tatagtatgt atactcaatc tactcattta acatctggct cttctagtaa tgcttcttct 2941 gcctccacaa aattgacaaa tttaagctct ggctcctctc aaaatagaac agcagagtgg 3001 gtaaatcaac agagaagtct tagccctttc atgagtggcg cacttaacat ctcacatgtc 3061 acgccaccct caagtagggc ttccagttct gggacggtct cgaccgtgcc caaggaagtt 3121 ttggactcct ggacgtctgc gtttaacaca cacagacagc cgctcttcgc acacctcaga 3181 gtgagggggg agtcacgtgt ttagtgaaaa gaaataattg gctataatgt gatttctttc 3241 taaatttggc taatttgtat cttttaaaaa aaaaaaaaaa aaaaaaaaaa a //