Typing tool
|
Complete norovirus genomes
KX586330 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 1..5100 ORF2: 5081..6703 ORF3: 6703..7509LOCUS KX586330 7509 bp RNA linear VRL 30-MAY-2017 DEFINITION Norovirus GII isolate Hu/NOV/GII/CHN/ZJ01, complete genome. ACCESSION KX586330 VERSION KX586330.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7509) AUTHORS Shen,Q. and Rui,Z. TITLE The genomic sequence analysis of human Norovirus strain in Zhenjiang JOURNAL Unpublished REFERENCE 2 (bases 1 to 7509) AUTHORS Shen,Q. and Rui,Z. TITLE Direct Submission JOURNAL Submitted (18-JUL-2016) School of Medicine, Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013, China COMMENT ##Assembly-Data-START## Assembly Method :: genious v. 4.8.2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7509 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="Hu/NOV/GII/CHN/ZJ01" /host="Homo sapiens" /db_xref="taxon:122929" /country="China" /collection_date="10-Jul-2015" /note="genotype: GII-4" CDS 1..5100 /codon_start=1 /product="nonstructural polyprotein" /protein_id="ART66971.1" /translation="MKMASNGASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARP KQPPPKEIPPRPPRPLTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPE ETNTAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAIS LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK LKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTM SDLKQALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEETANKDGC LKPKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD STQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCT SQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHEDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5081..6703 /codon_start=1 /product="VP1" /protein_id="ART66972.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML TQTTRTDGSTRGHKATVYTGSADFAPKPGRVQFETDTDHDFEANQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6703..7509 /codon_start=1 /product="VP2" /protein_id="ART66973.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKPS NSSTVTSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRNWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRA" ORIGIN 1 atgaagatgg cgtctaacgg cgcttccgct gccgctgttg ccaacagcaa caacgacatc 61 gcaaaatctt caagtgacgg tgtgttttct aacatggctg tcacttttaa gcgggccctc 121 ggggcgcggc ctaaacagcc gcccccgaag gaaataccac ccagaccccc gcgaccactc 181 acaccagaat tggtcaaaaa gatccctcct cccccaccca acggggagga tgaactagtg 241 gtctcttaca gcgccaaaga tggcgtttcc ggactgcctg agctcaccac tgtcagacaa 301 ccggaagaaa ccaacacggc gtttagtgtc cccccactca accaaaggga gagcagggac 361 gccaaggagc cactaactgg aacaatcatt gaaatgtggg atggagaaat ctaccattac 421 ggcctgtacg tggaacgagg tcttatactt ggtgtgcata agccaccggc agccattagc 481 cttgccaagg tcgagctagc accgctctct ttgttctgga gacctgtata caccccccag 541 tatctcatct ctccagacac tcttaggaga ttacatggag agtcattccc ctacactgca 601 tttgataata attgctacgc cttttgttgt tgggtgttag acctgaacga ctcatggcta 661 agcaggagaa tgattcagag aacaacaggc ttctttaggc cgtaccagga ttggaacagg 721 aaacccctcc ccactatgga tgattccaaa ttaaagaagg tagccaacat attcttgtgc 781 actttgtctt cactattcac caggcccatt aaggacataa tagggaagtt gaaacctctt 841 aacatcctta acattctggc tacatgtgat tggaccttcg caggcatagt ggaatcctta 901 atactcttgg cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatc 961 gcccccttgc taggtgatta tgaactgcaa ggacctgagg accttgcagt ggaactggtc 1021 ccaatagtga tgggggggat aggtttggtg ctaggattta ccaaagagaa aatcggaaag 1081 atgctatcat ccgctgcatc cactttaaga gcttgtaaag accttggtgc atacggactg 1141 gaaatcttaa aattggtcat gaaatggttc ttcccaaaga aagaggaagc aaatgaactg 1201 gctatggtga gatccatcga ggatgcagtg ctagacctcg aggcaattga aaacaaccac 1261 atgactaccc tactcaaaga caaagacagc ttggcaacct acatgagaac ccttgacctt 1321 gaggaggaga aagccagaaa gctctcaacc aaatctgctt cacccgatat tgtgggcaca 1381 atcaactctc ttctggcaag aatcgctgct gcacgttccc tagtgcatcg ggcgaaagaa 1441 gagctctcca gcaggccgag acctgtcgtt gtgatgatat cgggaagacc agggataggg 1501 aagactcacc ttgccaggga gttggccaag aagatcgcgg cctccctcac aggggaccag 1561 cgtgtgggtc ttatcccacg caatggtgtc gaccactggg acgcatacaa gggcgaaaga 1621 gttgtcctgt gggacgacta tggaatgagc aaccccatcc atgatgccct caggttgcag 1681 gagcttgctg acacttgccc cctcacgcta aattgtgaca gaattgagaa caaaggaaag 1741 gtctttgaca gtgatgccat aattatcacc accaatctgg ccaacccagc accactggat 1801 tatgtcaact ttgaagcgtg ctcgagacgc attgatttcc tcgtgtacgc agaagcccct 1861 gaggtggaga aggcaaagcg cgacttccca ggtcaacctg acatgtggaa gaacgctttc 1921 agtcctgact tctcacacat aaaactgtca ttggctccac agggtggttt tgacaagaac 1981 ggcaacaccc cgcatggaaa aggggtcatg aagaccctca ccactggctc cctcatcgcc 2041 cgagcatcag ggttactcca tgagaggcta gatgaatatg aactgcaagg cccagccctc 2101 accactttca actttgaccg caacaagata cttgctttta gacagcttgc tgctgaaaac 2161 aagtatgggc tgatggacac aatgagagtt ggaaaacagc tcaaggatgt caagaccatg 2221 tcagacctca aacaagcact caagaacatc gcgatcaaga agtgccagat agtgtacaat 2281 ggtggcacct acacacttga ggctgatggc aagggtagtg tgaaagttga caaagtgcaa 2341 agtgccactg tgcagaccaa caatgaacta gccggtgccc tacaccacct gaggtgcgct 2401 agaatcagat actatgttaa gtgcgtccag gaggcactgt attccatcat ccaaatcgct 2461 ggggctgcat tcgtcaccac gcgcatcgct aagcgcatga atatacagaa tctctggtcc 2521 aagccacagg tggaagacac agaagagacg gccaacaaag atggttgcct aaagcccaaa 2581 gatgatgaag agtttgtcgt ctcatccgac gacatcaaaa ctgagggcaa gaaagggaag 2641 aacaagtccg gccgtggcaa gaagcacaca gccttttcaa gtaaagggct cagtgatgag 2701 gagtacgatg agtacaagag aatcagagaa gaaagaaatg gtaagtactc catagaagag 2761 taccttcagg acagagacag gtactacgag gaggtggcca ttgccagggc aaccgaagag 2821 gacttctgtg aagaagaaga ggccaaaatc cggcagagaa ttttcagacc aacaaggaaa 2881 caacgtaaag aagagagggc ctctctcggc ttggtcacag gctctgaaat caggaagaga 2941 aacccagaag acttcaaacc caagggaaag ctgtgggctg atgatgacag aagtgtagac 3001 tacaatgaga aactcaactt tgaggcccca ccaagcatct ggtcgcggat agtcaacttt 3061 ggttcaggct ggggcttctg ggtctccccc agtctgttta taacatcaac ccatgtcata 3121 ccccaaggtg caaaagagtt cttcggagtc cctatcaagc aaatccagat acacaagtca 3181 ggtgaattct gccggttgag attcccaaag ccaatcagaa ctgatgtgac gggcatgatt 3241 ctagaagaag gtgcgcccga ggggaccgtg gccacactgc tcatcaagag accaactgga 3301 gagctcatgc ctctggcagc cagaatgggg acccatgcaa ccatgaaaat tcaggggcgc 3361 acagttggag ggcaaatggg tatgctcctg acaggatcca acgccaagag tatggaccta 3421 ggcacaacac caggtgactg cggctgcccc tacatctaca agagggggaa tgactacgtg 3481 gtcatagggg tccatacggc cgctgcccgt ggagggaaca ctgtcatatg tgccacccag 3541 gggagtgagg gggaagccac acttgaagga ggtgacagca aagggacata ctgtggcgca 3601 ccaatcttgg gcccagggag cgctccgaag ctcagtacca agactaagtt ttggagatca 3661 tccacaacac cactcccgcc tggcacttac gaaccagcct acctcggtgg caaagaccct 3721 agagtcaaag gtggcccttc attgcaacaa gttatgaggg accagctgaa gccattcaca 3781 gaacccagag gcaaaccacc aagaccaaat gtgttggaag ctgccaagaa aaccatcatc 3841 aatgtccttg agcaaacaat tgatccaccc caaaaatggt catttgcgca agcttgcgca 3901 tcccttgaca aaaccacctc cagcggccac ccgcaccaca tgcggaaaaa cgactgttgg 3961 aatggggagt ccttcacagg aaaattggct gatcaagcct ccaaggccaa cctaatgttt 4021 gaagagggaa agaacatgac tccagtctac acaggtgcac ttaaagatga gttggtgaag 4081 accgataaag tttatggtaa ggtcaagaag aggcttctgt ggggttcaga tctggcgacc 4141 atgatacggt gcgcccgagc ttttgggggc cttatggatg aactcaaggc acactgtgtc 4201 acacttcctg tcagagttgg tatgaacatg aatgaggatg gccccatcat ctttgagaag 4261 cactccagat atagatacca ctatgatgct gattattccc ggtgggactc aacacaacaa 4321 agggatgtgc tagcagcagc actagaaatc atggttaagt tctctccaga accacacctg 4381 gcccagatag ttgcagaaga cctcctttcc cctagcgtga tggatgtagg tgactttcaa 4441 atatcaataa gtgagggtct cccctctggg gtaccttgta cctcccagtg gaattccatc 4501 gcccactggc tcctcactct gtgcgcactc tctgaagtca cggacctgtc ccctgatatc 4561 attcaggcca actccctctt ttccttctat ggtgatgatg agattgtaag cacagacata 4621 aagttggacc cagagaagct gacagcaaaa ctcaaggagt acgggctgaa accaacccgc 4681 cccgacaaaa ctgaaggacc ccttgttatc tctgaagacc tggatggcct gacattcctc 4741 cggagaactg tgacccgtga tccagctggc tggtttggaa aattggaaca aagttcaatt 4801 ctcagacaaa tgtactggac cagaggtccc aaccatgaag atccatttga aacaatgata 4861 ccacactccc aaagacccat acaattgatg tccttgctgg gcgaggctgc actccacggc 4921 ccggcattct atagcaaaat tagcaaatta gtcattgcag agttgaagga aggtggcatg 4981 gacttttacg tacccagaca agagccaatg ttcagatgga tgagattctc ggatctgagc 5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga 5101 cgccaaccca tctgatgggt ccgcagccaa cctcgtccca gaggtcaaca atgaggttat 5161 ggctctggag cccgttgttg gtgccgctat tgcggcacct gtagcgggcc aacaaaatgt 5221 aattgacccc tggattagaa ataattttgt acaagcccct ggtggagagt ttacagtatc 5281 ccctagaaac gctccaggtg aaatactatg gagcgcgccc ttgggccctg atctaaatcc 5341 ctacctatcc catttggcca gaatgtacaa tggttatgca ggtggttttg aagtgcaggt 5401 aattctcgcg gggaacgcgt tcaccgccgg gaaggtcata tttgcagcag tcccaccaaa 5461 ttttccaacc gaaggcttga gccccagcca ggtcactatg ttcccccata tagtagtaga 5521 tgttaggcaa ttagaacctg tgttgattcc cttacccgat gttaggaata atttctatca 5581 ttacaatcaa tcaaatgatc ccaccattaa gttgatagca atgttgtaca caccacttag 5641 ggctaataat gctggggatg atgtcttcac agtttcttgc cgagttctca cgagaccatc 5701 ccccgacttt gatttcatat ttctagtgcc acccacagtt gagtcaagaa ctaaaccatt 5761 ctctgtccca gttttaactg ttgaggagat gaccaattca agattcccca ttcctttgga 5821 aaagttgttc acgggtccca gcagtgcctt tgttgtccaa ccacaaaacg gtaggtgcac 5881 gactgacggc gtgctcctag gcaccaccca actgtctcct gtcaacatct gcaccttcag 5941 aggagatgtc acccatatca caggtagtcg taactacaca atgaatttgg cttctcaaaa 6001 ttggagcaat tatgacccaa cagaagaaat cccagcccct ctaggaactc cagattttgt 6061 ggggaagatt caaggcatgc tcacccaaac cacaaggaca gatggctcaa cacgcggcca 6121 caaagccaca gtgtacactg ggagcgccga ctttgctcca aaaccgggta gagttcaatt 6181 tgaaactgac acagaccatg attttgaagc taaccaaaac acaaagttca ccccagttgg 6241 tgtcatccaa gatggtagca ccacccaccg aaatgaaccc caacagtggg tgctcccaag 6301 ttactcaggc agaaatactc ctaatgtgca tctggccccc gctgtagccc ccacttttcc 6361 gggtgagcaa cttctcttct tcagatccac catgcccgga tgcagcgggt accccaacat 6421 ggatttggac tgtctgcttc cccaggaatg ggtgcagtac ttctaccaag aggcagcccc 6481 agcacaatct gatgtggctc tgctaagatt tgtgaatcca gacacaggta gggttttgtt 6541 tgagtgtaag cttcataaat caggctatgt cacagtggct cacactggcc aacatgattt 6601 ggttatcccc cccaatggtt attttaggtt tgattcctgg gttaaccagt tttacacgct 6661 tgcccccatg ggaaatggaa cggggcgtag acgtgcacta taatggctgg agctttcttt 6721 gctggattgg catctgatgt ccttggctct gggcttggtt cccttatcaa tgctggggct 6781 ggggccatca accaaaaagt tgagtttgaa aataacagaa aattgcaaca agcatccttc 6841 caatttagca gtaatctaca acaggcttcc tttcaacatg acaaagagat gctccaagca 6901 caaattgagg ccaccaaaag gctacaacag gaaatgatga aagttaagca ggcaatgctc 6961 ctagagggtg ggttctctga gacagatgcg gcccgcgggg caatcaacgc ccccatgaca 7021 aaagctttgg actggagcgg gacaaggtac tgggctcccg atgctaggac tacaacatac 7081 aatgcaggcc gcttttccac ccctcagcca tcgggggcac tgccaggaag agctaatctt 7141 agggatgctg tccctgcccg gggttcctcc agtaagcctt ccaattcttc cactgttact 7201 tctgtgtact caaatcaaac tacttcaacg agacttggtt ctacagctgg ttctggtacc 7261 agtgtctcga gcttcccgtc aactgcaagg actaggaact gggttgagga tcaaagtagg 7321 aatttgtcac ctttcatgag gggggcccac aacatatcgt ttgtcacccc accatctagc 7381 agatcctcta gccaaggcac agtctcaacc gtgcctaaag agattttgga ctcctggact 7441 ggcgctttca acacgcgcag gcagccactc ttcgctcaca ttcgtaagcg aggggagtca 7501 cgggcgtaa //