Typing tool
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Typing tool
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Complete norovirus genomes
| KX268709 | GII.6 | |
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| GII.P7 |
ORF1: 1..5090
ORF2: 5071..6714
ORF3: 6714..7490
LOCUS KX268709 7537 bp RNA linear VRL 19-SEP-2018
DEFINITION Norovirus Hu/GII.P7_GII.6/Maryland/2014/USA non-structrual
polyprotein gene, partial cds; and major capsid protein and minor
capsid protein genes, complete cds.
ACCESSION KX268709
VERSION KX268709.1
DBLINK BioProject: PRJNA490509
BioSample: SAMN10060452
KEYWORDS .
SOURCE Norovirus Hu/GII.P7_GII.6/Maryland/2014/USA
ORGANISM Norovirus Hu/GII.P7_GII.6/Maryland/2014/USA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7537)
AUTHORS Yang,Z. and Kulka,M.
TITLE Direct Submission
JOURNAL Submitted (19-MAY-2016) Division of Molecular Biology, Office of
Applied Research and Safety Assessment, Center for Food Safety and
Applied Nutrition, U.S. Food and Drug Administration, 8301 Muirkirk
Rd., Laurel, MD 20708, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 8.0.1
Coverage :: 12,203 X
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7537
/organism="Norovirus Hu/GII.P7_GII.6/Maryland/2014/USA"
/mol_type="genomic RNA"
/strain="Hu/GII.P7_GII.6/Maryland/2014/USA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1885247"
/country="USA"
/collection_date="Dec-2014"
/collected_by="OARSA"
/note="genotype: GII.P7_GII.6"
CDS <1..5090
/note="ORF1"
/codon_start=3
/product="non-structrual polyprotein"
/protein_id="ANY58561.1"
/translation="MASNDATTAFGSQNSVNDSINTTPSNKEEVGAFSNIKVGFKKML
GAVPKGTKAPSSDQHCPSVKIGTKTLTVPPEPPNGEDTVQFDAKSETVRGLPDLTTVQ
NEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPPAA
ISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELN
DTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLL
GKLKPLNLLHLLASCDWTFAGIVETVILMAELFGIFWTPPDVSSFIASLIGDFELQGP
EDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWF
FPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKL
STKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMAR
HLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQELAD
TCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEI
EKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTA
RVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGSALKSVK
TLEDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDQTSQAANEVGAALLR
LRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETSESEKEV
AQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSI
EEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTGSD
IRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLI
TTTHVLPKGINELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCS
ILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCP
YIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPGKA
PKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRGKP
PRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHARKNDHWNGES
FTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMI
RCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQ
RSVLSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWN
SIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGL
VPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHEN
PYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFR
WMRFSDLSTWEGDRNLAPEGVNEDGVE"
CDS 5071..6714
/note="ORF2"
/codon_start=1
/product="major capsid protein"
/protein_id="ANY58562.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRARNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGNSIGATRAHEVHIDTTNPRYTPKLGSVLMHSESTDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
CDS 6714..7490
/note="ORF3"
/codon_start=1
/product="minor capsid protein"
/protein_id="ANY58563.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSEPPKIKVNSDSASVYSSASTAPSQST
HSTALTAGSSSSRTTSSSAVASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQI"
3'UTR 7491..7537
ORIGIN
1 agatggcgtc taacgacgct actactgcct ttggcagcca aaactctgtc aatgacagta
61 tcaacaccac cccttctaat aaagaagagg ttggtgcatt ctccaacatc aaagttggtt
121 ttaagaaaat gctgggtgcc gttcccaagg ggaccaaagc acccagtagt gatcagcact
181 gcccctcagt taagatcggg accaagacat taacagttcc ccctgagccc ccaaatggtg
241 aagacaccgt gcagtttgat gcgaagtcgg aaactgtgcg cgggttacca gacttgacaa
301 cggtgcagaa tgaacacgaa aacacaccat atactgtccc tccattgagt gaaagggaac
361 acagaccagc tactgaaccg cttcctggca caatactgga gatgtgggat ggtgaattct
421 accattactc tgtgtacgtc agcggtggca aagccctagg tgttcacaag ccccctgcag
481 cgataagcct cgcgacgata gagctcacac ccatatctct ttattggagg cccgtctaca
541 ctcccaacta tctggtctgc ccagacacgt tgaagggcct tgctggtgag aagttcccct
601 acacggcctt cagcaacaac tgttacaact tctgttgctg ggtgcttgag ctcaatgaca
661 cgtggcttag caggaggagc atctctagga ccaccggctt cttcaaacca taccagtctt
721 ggaataggaa accccttcca accgttgatg atggaaagat caaaaaggtg gccaacgcaa
781 ttctctgtgc acttggatca ctgttttcaa agccaatcaa ggacctattg ggcaaactca
841 aaccattgaa cttgctgcac ttgctcgcat catgtgactg gacgtttgcg ggtatagtag
901 agacagtcat cctaatggcg gaacttttcg gcatcttttg gacaccgcca gatgtttcca
961 gtttcatagc atccctgata ggtgattttg aattgcaagg gcctgaggat ctggctgtgg
1021 agcttgtacc cgtggtcatg ggtggcatag gaatggttct cggctttact gctgagaaga
1081 taggccgtat gctatcgtcc gctgcatcaa cactacgggc gtgcaaagat ttgggaaatt
1141 atgctcttga catattgaaa ctggttatga agtggttctt cccaaagaaa gaagagaaag
1201 ccgagatgga aaccctaagg gcgattgagg atgccgtcct ggacatggaa gctataggaa
1261 acaaccatct cacaaccctc ctcaaggaca aggatagcct cacggctttc atgaagactc
1321 tagatctaga agaagagaag gcgaggaagc tgtccaccaa atcatcctcg ccagacattg
1381 tcggcaccat taatgccata ctggctagaa tagctgctgc caggtccctc ttacacaagg
1441 ctaaagaaga aatgttcagc aggatcagac ccgtggttgt catgatctcg ggtagacctg
1501 gcattggcaa aacccacatg gcaagacact tggctaagag tatcgccaac accatgagcg
1561 gcgaccagcg agtggggctc gttccacgca acggggttga tcattgggac gcctacaggg
1621 gagagagggt ggttttatgg gatgattatg gcatgggaaa ccctgtcaaa gatgccctaa
1681 cactgcaaga gctggccgac acctgcccag taactctaaa ctgtgatagg attgagaaca
1741 aggggaagat gtttgacagt gatgtcatca taattacgac caatttagtc aacccagcgc
1801 ccctcgatta tgtaaacttc gaggcgtgct ccagaagggt cgactttctg gtctatgcag
1861 aatcaccaga aattgagaag gttaagagag acttccccgg ccaacctgac atgtggaagg
1921 accattttaa gccagacttt tcccacataa aactgactct agccccacag ggtggatttg
1981 acaagaatgg caacaccccg catggtaagg gcactatgcg atccctaacc caggggtccc
2041 tgactgcaag ggttgcaggt cttgttcatg agaggagaga cgagtttcag ctccagggga
2101 acgaccttca aacatataac tttgatacca acagagtctc tgcatttagg aagctggccg
2161 cagacaacaa gtatgggatc atggagacta tgagagtggg ctcagcgctt aagagtgtca
2221 aaaccttgga agatctgaaa gttgcactga gggatgtgaa gttcaatgag tgtgagataa
2281 tttacagaaa ctccaaatac cgagtctctt ccaatggcaa aggttctgtc tctgttgaca
2341 aagttgagga ccaaacatcc caggccgcaa acgaagtggg tgcagcactt cttagactca
2401 gacaggcaag ggccaggtac tatgtcagct gcttccaaga cctcgtttac actctaatac
2461 aggtcgccgg agcatcattc gttgtcaaca ggatctctaa aaggttctgt tgggagagat
2521 gggtcaaacc aaccgagacc caggaaacga gtgaatccga aaaggaagtg gcccaaggca
2581 gatgggagat tgagcccaag gacacagaac cagaaggtaa gaagggtaag aacaagaaag
2641 gaagaggcaa gaaacacaca gctttctcca gtaaaggtct gagtgatgag gagtatgacg
2701 agtacaagag aatcagagaa gaaaggaacg gaaaatactc cattgaggaa tacctgcaag
2761 accgggatcg ctactatgag gaagtggcag ttgcccgggc gacagaggag gacttctgtg
2821 aagaggaaga ggccaagata agacaaagaa tctttcgccc cacaaagaaa cagaggaagg
2881 aagaaagggg ggtgcttggt ttggttactg gctcagacat caggaagaga agaccagacg
2941 attttcagcc gaagggcaac ctgtgggcag acgacaccag gagtgtggac tacaacgaga
3001 gacttgattt cgaggctccc ccaagtgtct ggtcaagaat agtcccattg ggcactggct
3061 ggggcttctg ggtctcatca aacctcctga tcacaacaac gcacgtccta cctaagggga
3121 ttaatgagct ctttggagtt gagatcaaac agattcagat tcataagtct ggggagttct
3181 gcaggttcag attcccaaga ccaattagac cagacgtcac agggctcgtg ttggaggagg
3241 gcgctccaga aggcactgtc tgctccatac tcgtaaagag acctacaggt gagatgatcc
3301 ccctggcagt gaggatgggc acgcatgcat ccatgaaaat acagggtagg accgtcggtg
3361 gccagatggg gatgctcctc acaggggcaa atgcgaagaa catggatctt ggcaccggtc
3421 ctggtgactg cggttgcccc tacatctaca aacgtggcaa tgatatagtt gtcgcgggtg
3481 tccacaccgc agcagcccgg ggaggcaaca ctgtcatatg tgccactcaa gggcaagatg
3541 gggaagcagt ccttgaggga aatgagaacc ttggcactta ctgcggtgct ccaatcttgg
3601 gtccaggcaa ggcgcccaaa cttagcacga agaccaagtt ctggcgttca tcaccagacg
3661 ctttgccgcc aggcacttat gaacctgcct acttgggagg taaggaccct agagtggaaa
3721 aaggaccatc cctgcagcaa gtcatgaggg accagctaaa acctttcaca gaacccaggg
3781 gcaagccacc tagacctgca gtcttagaag aagccaaaaa gacagtgatg aatgttctag
3841 agcaaaccat tgaccctgct aaaccgtgga cctactccca agcatgtgcc tcactggaca
3901 agaccacttc cagtggtagc ccccatcatg ccaggaaaaa tgaccattgg aatggggaat
3961 ccttcactgg ccccctcgca gaccaagcat ccaaagccaa cctcatgtac gagcaggcca
4021 aacatgtgca gcccgtgtac acggccgcac tcaaagatga actagtcaaa actgataaga
4081 tctacaagaa gataaagaaa aggctcttat gggggtcgga tcttggtaca atgatcaggt
4141 gtgccagggc ctttggcggc ctcatggata gcatgaaggc aagctgcata gctctcccat
4201 gtagggtagg aatgaacatg aatgaagatg gccccatcat atttgacaag cattctaagt
4261 ataggtacca ttatgatgct gactattcca ggtgggactc aacccagcaa aggagcgttc
4321 tctcggccgc tatggaagtg atggtgcggt tctctgctga accagagctg gcacaagtgg
4381 ttgcagagga cctcctggca cccagccaac tagatgttgg cgatttcgtc atctcagtcc
4441 aggagggtct gccatcaggg gtcccatgca catcacaatg gaattcaata gcacactgga
4501 tcctaacctt gagtgcaatg gcagaagtgt cgggtctctc accagatgtt gttcaagccc
4561 actcctgttt ctcattctac ggtgatgatg agatcgtcag cactgacatc aaccttgatc
4621 ccatgaagtt gacacagaag ctcagagagt atggcctggt ccccacccga cctgacaaaa
4681 ctgagggtcc cctcgtaata actgaagatc tcaccggcct aacgttcctg cgcaggtcaa
4741 ttgcacggga cccagctggg tggtttggaa agttggacca agactcaatc ctcagacagt
4801 tgtactggac aaggggcccc aaccatgaga acccatatga gagcatggtc cctcattccc
4861 agcgggccac acaacttatg gcccttctcg gtgaggcttc actgcacggt ccccagtttt
4921 acaagaaagt tagcaagatg gttattaatg agatcaaaag tggtggtctg gaattctatg
4981 tgcccagaca agaggccatg ttcagatgga tgagattctc tgacctcagc acatgggagg
5041 gcgatcgcaa tcttgctccc gagggtgtga atgaagatgg cgtcgaatga cgctgctcca
5101 tcgaatgatg gtgctgccaa cctcgtacca gaggccacca atgaggttat ggcgcttgag
5161 ccggtggtgg gagcctcaat tgctgctcct gtcgtcggcc aacaaaatat aattgacccc
5221 tggattagag aaaactttgt tcaggcacca cagggcgagt ttactgtttc accaaggaac
5281 tcacctggtg agatgcttct aaatcttgaa ctaggccctg agctcaaccc ttatctgagt
5341 cacttgtccc gcatgtataa cggctatgct ggtggtatgc aggttcaggt ggtcctagct
5401 gggaatgcgt tcacagctgg taaaatcatc tttgccgccg tcccaccaca tttccctgtt
5461 gagaacatta gtgcagccca aatcacaatg tgcccccatg taatcgttga tgtgagacag
5521 cttgagccag tgcttttgcc cctccctgac ataaggaata gattctttca ttataaccag
5581 gaaaataccc cccgaatgag acttgtggct atgttgtata caccccttag agcaaattct
5641 ggtgaggatg tgtttacggt gtcttgcaga gttctgaccc gccctgcccc cgactttgag
5701 ttcacgtttt tggtgccacc aactgtggag tcaaagacta agccctttac actccctatt
5761 ctgactcttg gagagctgtc caactccaga ttccccgctc cgatagacat gttgtacact
5821 gatcccaatg aggcaattgt ggtgcaacca caaaatggca ggtgcactct agatggaaca
5881 cttcaaggga ccacccaact ggtacccacc caaatttgct ccttcagggg cacgctaatt
5941 agccagacgt cgaggtctgc agattcaaca gattcagccc cacgggcgag gaaccaccct
6001 ctccacgttc agctgaagaa cctcgatggg acaccatatg acccaacaga tgaggtgcca
6061 gcagttttgg gtgccataga tttcaaagga actgtgtttg gggtcgctag ccaaagaaac
6121 accacaggga actctatagg agcaacccgc gcccatgaag tgcatataga caccacaaac
6181 cctagataca ccccaaagct tggctctgtg ttgatgcatt ctgaatctac tgattttgat
6241 gatggacaac ccacccgctt tacccccatt ggtatgggag ccgatgattg gcaccaatgg
6301 gaattgcccg aatattctgg tcacctcact cttaatatga atttggcccc cgcagttgcc
6361 cctgctttcc ctggtgagcg cattctcttc ttcagatcag tggtaccgtc tgctggtggc
6421 tatggatcag gtcacataga ttgcctcatc ccacaggaat gggttcagca tttctaccag
6481 gaggccgctc catcacagtc cgcggtggct cttatcagat atgtcaaccc tgacactgga
6541 agaaacatct ttgaggcaaa actgcataga gaagggttca tcactgtggc aaattctgga
6601 aacaacccca tagttgtgcc cccaaatggt tacttcaggt ttgaggcctg ggtcaatcag
6661 ttctacacac tcacccccat gggaactgga caggggcgca gaagagttca ataatggcag
6721 gagctttctt agctggattg gcaggtgacg ccataacaag tggtgtcggg tccctaatca
6781 atgccggggc caatgcaatt aaccagaagg tagaatatga ctttaataaa cagctccaat
6841 tggcatcctt caaacatgac aaagagatgt tgcaatcaca agtactggcc actaaacagc
6901 tccagcagga gatgatgaac ataaggcaag gggtcttgtc cgctggcggc ttttccccta
6961 cagatgccgc gagaggtgct gtgaacgcgc cgatgacaaa aattttggat tggaatggaa
7021 caaggtactt tgccccaaat agtatgaaga caaccagtta ttcgggccag ttttccagca
7081 accctgtgca taggcaaccc actttacccc gttctgaacc cccaaaaatt aaggttaata
7141 gtgattctgc tagtgtgtat agttctgcat ctactgctcc ttcacaatca actcactcaa
7201 cggctttgac tgcggggtct agctcatcta ggacaacatc ctcttctgca gtagcttcca
7261 ccctatctag gactagtgac tgggtgagag gacaaaatga aaggcttagc ccgtttatgg
7321 atggtgctct ccaaacaact tttgtcacac caccatcgag caaagcttca tcatatgggt
7381 cggtctcaac cgttcccaaa gctgttttgg actcctggac tcctatgttc aatacccata
7441 ggcagcctct cttcgctcat gtgcgcaggc gaggggagtc acagatttag tgaaaagatt
7501 gattaggtga tggtgctctc caaacaactt ttgtcac
//