Typing tool
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Typing tool
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Complete norovirus genomes
| KX158285 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 127..933
ORF2: 933..2555
ORF3: 2536..7242
LOCUS KX158285 7356 bp RNA linear VRL 03-DEC-2016
DEFINITION Norovirus GII strain 15-59, complete genome.
ACCESSION KX158285
VERSION KX158285.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7356)
AUTHORS Nasheri,N., Ronholm,J. and Petronella,N.
TITLE Norovirus Genome sequencing and assembly
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7356)
AUTHORS Nasheri,N., Ronholm,J. and Petronella,N.
TITLE Direct Submission
JOURNAL Submitted (26-APR-2016) Bureau of Microbial Hazards, Health Canada,
251 Sir Frederick Banting Driveway, Ottawa, ON K1A 0K9, Canada
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 3.7.1
Assembly Name :: 15-59
Coverage :: 261x
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7356
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="15-59"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Canada"
/collection_date="2015"
/note="genotype: GII"
CDS complement(127..933)
/codon_start=1
/product="VP2"
/protein_id="APE73911.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIETTKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSNPQPSGALPGRANLRDAVPARSSSSKPS
NSSTATTVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
CDS complement(933..2555)
/codon_start=1
/product="VP1"
/protein_id="APE73912.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRLPIPLERLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSAEFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYITVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
CDS complement(2536..7242)
/codon_start=1
/product="ORF1"
/protein_id="APE73913.1"
/translation="MWDGEIYHYGLYVERGLILGVHKPPAAISLAKVELTPLSLFWRP
VYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGFFR
PYQEWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNILNILATCDW
TFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPIVMGGIGL
VLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRSIE
DAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTINSLL
ARIAAARSLVHRAKEELSSRLRPVVVMISGRPGIGKTHLARELAKKVAASLTGDQRVG
LIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENKGKV
FDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWKNA
FSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEYELQG
PALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQALKNIAIKKC
QIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARIRYYVKCAQEAL
YSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMTNKDGCLKPKDDEEFVVSSDD
IKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYY
EEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLITGSEIKKRNPEDFKP
KGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGAK
EFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTGELM
PLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVV
IGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWR
SSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVLEAAKK
TIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASK
ANLMFEEGKNMTPVYTGALKDELVKTDKVYGKIKKRLLWGSDLATMIRCARAFGGLMD
ELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAALEIM
VKFSPEPHLAQVVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLCA
LSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGP
LVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGTNHEDPFETMIPHSQR
PIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWE
GDRNLAPSFVNEDGVE"
ORIGIN
1 atgctatcat ccgctgcatc cacgttaaga gcttgtaaag accttggtgc atacggacgg
61 gaaatcttaa aattggttgt gaagcggttc ttcaaaaaga aagatagtca attttgtctt
121 ttcacattac gcccgtgact cccctcgctt acgaatgtga gcgaagagtg gctgcctgcg
181 cgtgttgaaa gcgccagtcc aggagtccaa aacctcttta ggcacggttg agactgtgcc
241 ttgactagag gatctgctag atggtggggt gacaaacgat atgttgtgtg cccccctcat
301 gaaaggtgac aaattcctac tttgatcctc aacccaactc ctagtccttg cagttgacgg
361 gaggctcgag acactggtac cagaaccagc tgtagaacca agtctcgttg aagtagtttg
421 atttgaatac acagtagtag cagtagaaga gttagaaggt ttactggagg aactccgagc
481 agggacagca tccctaagat tagctcttcc tggcagtgcc cccgatggtt gagggttaga
541 gaagcggcct gcattgtatg ttgtagtcct agcatcggga gcccagtacc ttgtcccgct
601 ccagtccaaa gcttttgtca tgggggcgtt gattgccccg cgggctgcat ccgtctcaga
661 gaacccaccc tctaggagca ttgcctgctt aactttcatc atttcctgtt gtaacttttt
721 ggtggtctca atttgtgcct ggagcatctc tttgtcatgt tgaaaggaag cctgttgtag
781 attgctgcta aattggaagg atgcttgttg caattttctg ttgttttcaa actcaacttt
841 ttggttgatg gccccagccc cagcattgat aagggaacca agtccagagc caaggacatc
901 agatgccaat ccagcaaaga aagctccagc cattatactg cacgtctacg ccccgttcca
961 tttcccatgg gggcaagcgt gtagaactgg ttgacccagg aatcaaatct aaaataacca
1021 ttggggggaa taaccaaatc atgttggcca gtgtgagcca ctgtaatata gcctgatttg
1081 tgaagcttac actcaaacaa aaccctacct gtgtctggat tcacaaatct tagcagagcc
1141 acatcagatt gtgctggggc tgcctcttgg tagaagtact gcacccattc ctgggggagc
1201 agacagtcca aatccatgtt ggggtacccg ctgcatccgg gcatggtgga tctgaagaag
1261 agaagttgct cacccggaaa ggtgggggct acagcggggg ccagatgcac attatgagtg
1321 tttctgcctg agtaacttgg gagcacccac tgttggggtt catttcggtg ggtggtgcta
1381 ccatcttgga tgacaccgac tggggtgaac tttgtgtttt ggttagcctc aaaatcatgg
1441 tttgtgtcag tttcaaattg gactctaccc agttttggag caaattcggc gctcccagtg
1501 tacactgtgg ctttgtggcc gcgtgttgag ccatctgtcc ttgtggtttg ggtgagcacg
1561 ccttgaatct tccctacaaa gtctggagtt cctagggggg ctgggatttc ttctgttggg
1621 tcataattgt tccaattttg agaagccaaa ttcattgtgt agttatgact acctgtgatg
1681 tgggtgacat ctcctctgaa ggtgcagatg ttgacagggg acagttgggt agtgcctagg
1741 agcacgccat cagtcgtgca cctgccgttt tgtggttgaa caacaaaggc actgctggga
1801 cccgtgaaca gcctttccaa aggaatgggt aatcttgaat tggtcatctc ctcaacagtt
1861 aaaactggga cagagaatgg tttagttctt gactcaactg tgggtggcac tagaaatatg
1921 aaatcaaaat cgggggatgg tctcgtgaga actcggcaag aaactgtgaa gacatcatcc
1981 ccagcattgt tagccctgag tggagtatac aacattgcta tcaacttaat ggtggggtca
2041 tttgattgat tataatgata aaaattattc ctaacatcgg gtaagggaat caacacaggt
2101 tctagttgcc taacatccac tactatatgg gggaacatag tgacctggct ggggctcaag
2161 ccttcagttg gaaaatttgg tgggactgct gcaaatatga ccttcccggc ggtgaacgcg
2221 ttccccgcga gaattacctg cacttcaaaa ccacctgcat aaccattgta cattctggct
2281 aaatgggata ggtagggatt tagatcaggt cccaagggcg cgctccatag tatttcacct
2341 ggagcgtttc taggggatac tgtaaactct ccaccagggg cttgtacaaa attgtttcta
2401 atccaggggt caattacatt ttgttggccc gctacaggtg ccgcaatagc ggcaccaaca
2461 acgggctcca gagccataac ctcattgttg acctctggga cgaggttggc tgcggaccca
2521 tcagatgggt tggcgtcact cgacgccatc ttcattcaca aaactgggag ccagattgcg
2581 atcgccctcc cacgtgctca gatctgagaa tctcatccat ctgaacattg gctcttgtct
2641 gggcacgtaa aaatccatgc caccttcctt caactctgca atgactaatt tgctaatctt
2701 gctataaaat gccgggccgt ggagtgcagc ctcgcccagc aaggacatca attgtatggg
2761 tctttgggag tgtggtatca ttgtttcaaa tggatcttca tggttggtac ccctggtcca
2821 gtacatttgt ctgagaattg aactttgttc caattttcca aaccagccag ctgggtcacg
2881 ggtcacagtt ctccggagga atgtcaggcc atcgaggtct tcagagataa caaggggtcc
2941 ttcagtttta tcggggcggg ttggtttcag cccgtactcc ttgagttttg ctgtcagctt
3001 ctctgggtcc aactttatgt ctgtgctcac aatctcatca tcaccataga aggagaaaag
3061 ggagttggcc tgaatgatgt caggggacag gtccgtgact tcagagagtg cacaaagagt
3121 gaggagccag tgggcgatgg aattccactg ggaggtgcaa ggtaccccag agggaaggcc
3181 ctcacttatt gatatttgaa agtcacctac atccattacg ctaggggaaa ggaggtcttc
3241 tgcaactacc tgggccaggt gtggctctgg agagaactta accatgattt ctagtgctgc
3301 tgctagcaca tccctttgtt gtgttgagtc ccaccgggaa taatcagcat catagtgata
3361 tctatatctg gagtgcttct caaagatgat ggggccatcc tcattcatgt tcataccaac
3421 tctgacagga agtgtgacac agtgcgcctt gagttcatcc ataaggcctc caaaagctcg
3481 ggcgcaccgt atcatggtcg ccagatctga accccacaga agcctcttct tgatcttacc
3541 ataaactttg tcggtcttta ccaactcatc tttaagtgca cctgtgtaga ctggagtcat
3601 gttctttccc tcttcaaaca ttaggttggc cttggaggct tgatcagcca attttcctgt
3661 gaaggactcc ccattccaac aatcgttttt ccgcatgtgg tgtgggtgac cgctggaggt
3721 ggttttgtca agggatgcgc aagcttgcgc aaatgaccat ttttggggtg gatcaattgt
3781 ttgctcaagg acattgatga tggttttctt ggcagcttcc aacacatttg gtcttggtgg
3841 tttgcctctg ggttctgtga atggctttag ctggtccctc ataacttgtt gcaatgaagg
3901 gccacctttg actctggggt ctttgccacc gaggtaggct ggttcgtagg tgccaggtgg
3961 gagtggtgtt gtggatgatc tccaaaactt agtcttggta ctgagcttcg gagcgctccc
4021 tgggcccaag attggtgcgc cacagtatgt ccctttacta tcacctcctt caagtgtggc
4081 ttctccctca ctcccctggg tggcacatat gacagtgttt cctccacggg cagcggccgt
4141 atggactcct atgaccacgt agtcattccc cctcttgtag atgtaagggc agccgcagtc
4201 gcctggtgtt gtgcctaggt ccatactctt ggcgttggat cctgtcagga gcatacccat
4261 ttgccctcca actgtgcgcc cctgaatttt catggttgca tgggtcccca ttctggctgc
4321 cagaggcatg agttctccag ttggtctctt gatgagcagt gtggccacgg tcccctcggg
4381 cgcaccttct tctagaatca tgcccgtcac atcagttctg attggctttg ggaatctcaa
4441 ccggcagaat tcacctgatt tgtgtatctg gatctgcttg atagagactc cgaaaaactc
4501 ttttgcacct tggggtatga catgggttga tgttataaac agactggggg agacccagaa
4561 gccccagcct gaaccaaagt tgactatccg cgaccaaatg cttggtgggg cctcaaagtt
4621 gagtttctca ttgtagtcaa cacttctgtc atcatcagcc cacagctttc ccttgggttt
4681 gaagtcttct gggttcctct tcttgatttc agaacctgtg atcaagccga gagaggccct
4741 ctcctctttg cgttgtttcc ttgttggtct gaaaattctc tgccggattt tggcctcttc
4801 ttcttcacag aagtcctctt cggttgccct ggcaatggcc acctcctcgt agtacctgtc
4861 tctgtcctga aggtactctt ctatggagta cttaccattc ctttcttctc tgattctctt
4921 gtactcatcg tactcctcat cactgagccc tttgcttgaa aaggctgtgt gcttcttgcc
4981 acggccggac ttgttcttcc ctttcttgcc ctcagttttg atgtcatcgg atgagacgac
5041 aaactcttca tcatctttgg gttttaggca accatctttg ttggtcatct cttctgtgtc
5101 ttccacctgt ggcttggacc agagattctg tatattcatg cgcttagcga tgcgcgtggt
5161 gacgaatgca gccccagcga tttggatgat ggaatacagt gcctcctggg cgcacttaac
5221 atagtatctg attctagcgc accttaggtg gtgtagggca ccggctagtt cattgttggt
5281 ctgcacagtg gcactttgca ctttgtcaac tttcacacta cccttgccat cggcctcaag
5341 tgtgtaggtg ccaccattgt acactatctg gcacttcttg atcgcgatgt tcttgagtgc
5401 ttgtttgagg tctgacatgg tcttgacatc cttgagctgt tttccaactc tcattgtgtc
5461 catcagccca tacttgtttt cagcagcgag ctgcctaaaa gcaagtatct tgttgcggtc
5521 aaagttgaaa gtggtgagtg ctgggccttg cagttcatat tcgtctagcc tctcatggag
5581 cagccctgat gctcgggcga tgagggagcc agtggtgagg gtcttcatga ccccttttcc
5641 atgcggggtg ttgccgttct tgtcaaaacc accctgtgga gccaatgaca gttttatgtg
5701 tgagaagtca ggactgaaag cgttcttcca catgtcaggt tgacctggga agtcgcgctt
5761 tgccttctcc acctcagggg cttctgcgta cacgaggaag tcaatacgtc tcgagcacgc
5821 ttcaaagttg acataatcca gtggtgctgg gttggccaga ttggtggtga taattatggc
5881 atcactgtca aaaactttcc ctttgttctc aattctgtca caatttagcg tgagagggca
5941 agtgtcagca agctcctgca acctgagggc atcatggatg gggttgctca ttccatagtc
6001 atcccatagg acaactcttt cgcccttgta tgcgtcccag tggtcgacac cattgcgtgg
6061 gataagaccc acacgctggt cccctgtgag ggaggccgcg accttcttgg ccagctccct
6121 ggcaaggtga gtctttccta tccctggtct tcccgatatc atcacaacga caggtctcag
6181 cctgctggag agctcttctt tcgcccgatg cactagggag cgtgcagcag cgattcttgc
6241 cagaagagag ttgattgtgc ccacaatatc gggtgaagca gatttggttg agagcttcct
6301 ggctttctcc tcctcaaggt caagggttct catataggtt gccaaactgt ctttgtcttt
6361 gagcagggtg gtcatgtggt tgttttcaat tgcctcgagg tctagcactg catcctcgat
6421 ggatctcacc atagccagtt catttgcttc ctctttcttt gggaagaacc acttcatgac
6481 caattttaag atttccagtc cgtatgcacc aaggtcttta caagctctta aagtggatgc
6541 agcggatgat agcatctttc caattttctc tttggtaaat cctagcacca aacctatccc
6601 ccccatcact attgggacca gttccactgc aaggtcctca ggtccttgca gttcataatc
6661 acctagcaag ggggcgatca tcgcagacac atctgggggt gtccagaaaa ctccaaagag
6721 ttctgctaag agtattaaag attccactat acctgcgaag gtccagtcac atgtagccag
6781 aatgttaagg atgttaagag gtttcaactt ccctattatg tccttaatgg gtctggtgaa
6841 tagtgaagac aaagtgcaca agaatatgtt ggctaccttc tttaatttgg aatcatccat
6901 ggtggggagg ggtttcctgt tccattcctg gtacggcctg aagaaaccag ttgttctctg
6961 gatcattctc ctgcttagcc atgagtcgtt taggtctaac acccaacaac aaaaggcgta
7021 gcaattgttg tcaaatgcag tgtaagggaa tgactctcca tgtaatctcc taagagtgtc
7081 tggagagatg agatactggg gggtgtatac aggtctccag aacaaagaga gcggtgttag
7141 ctcgaccttg gcaaggctga tggctgccgg tggcttgtgc acaccaagta taagacctcg
7201 ctccacgtac aggccgtaat ggtaaatttc tccatcccac atttcaataa ttgttccagt
7261 tagtggctcc ttggcgtcct tgctctccct ttggttgagt ggggggacac tgaacgccgt
7321 gttggtctct tccggttgtc tgacagtggt gagctc
//