Typing tool
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Typing tool
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Complete norovirus genomes
| KX158283 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..3543
ORF2: 3524..5146
ORF3: 5146..5952
LOCUS KX158283 5963 bp RNA linear VRL 03-DEC-2016
DEFINITION Norovirus GII strain 15-58, partial genome.
ACCESSION KX158283
VERSION KX158283.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 5963)
AUTHORS Nasheri,N., Ronholm,J. and Petronella,N.
TITLE Norovirus Genome sequencing and assembly
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5963)
AUTHORS Nasheri,N., Ronholm,J. and Petronella,N.
TITLE Direct Submission
JOURNAL Submitted (26-APR-2016) Bureau of Microbial Hazards, Health Canada,
251 Sir Frederick Banting Driveway, Ottawa, ON K1A 0K9, Canada
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 3.7.1
Assembly Name :: 15-58
Coverage :: 75x
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..5963
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="15-58"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Canada"
/collection_date="2015"
/note="genotype: GII"
CDS <1..3543
/codon_start=1
/product="ORF1"
/protein_id="APE73914.1"
/translation="QRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELA
DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPE
VEKAKRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLI
ARASGLLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDV
KTMSDLKQALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALH
HLRCARIRYYVKCAQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMTNK
DGCLKPKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE
RNGKYSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASL
GLITGSEIKKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFW
VSPSLFITSTHVIPQGAKEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGA
PEGTVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTT
PGDCGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAP
ILGPGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPF
TEPRGKPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKN
DCWNGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKIKKRLLWG
SDLATMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYS
RWDSTQQRDVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVMDVGDFQISISEGLPSGV
PCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTA
KLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWT
RGTNHEDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVP
RQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 3524..5146
/codon_start=1
/product="ORF2"
/protein_id="APE73915.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRLPIPLERLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSAEFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYITVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
CDS 5146..5952
/codon_start=1
/product="ORF3"
/protein_id="APE73916.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIETTKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSNPQPSGALPGRANLRDAVPARSSSSKPS
NSSTATTVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 cagcgtgtgg gtcttatccc acgcaatggt gtcgaccact gggacgcata caagggcgaa
61 agagttgtcc tatgggatga ctatggaatg agcaacccca tccatgatgc cctcaggttg
121 caggagcttg ctgacacttg ccctctcacg ctaaattgtg acagaattga gaacaaaggg
181 aaagtttttg acagtgatgc cataattatc accaccaatc tggccaaccc agcaccactg
241 gattatgtca actttgaagc gtgctcgaga cgtattgact tcctcgtgta cgcagaagcc
301 cctgaggtgg agaaggcaaa gcgcgacttc ccaggtcaac ctgacatgtg gaagaacgct
361 ttcagtcctg acttctcaca cataaaactg tcattggctc cacagggtgg ttttgacaag
421 aacggcaaca ccccgcatgg aaaaggggtc atgaagaccc tcaccactgg ctccctcatc
481 gcccgagcat cagggctgct ccatgagagg ctagacgaat atgaactgca aggcccagca
541 ctcaccactt tcaactttga ccgcaacaag atacttgctt ttaggcagct cgctgctgaa
601 aacaagtatg ggctgatgga cacaatgaga gttggaaaac agctcaagga tgtcaagacc
661 atgtcagacc tcaaacaagc actcaagaac atcgcgatca agaagtgcca gatagtgtac
721 aatggtggca cctacacact tgaggccgat ggcaagggta gtgtgaaagt tgacaaagtg
781 caaagtgcca ctgtgcagac caacaatgaa ctagccggtg ccctacacca cctaaggtgc
841 gctagaatca gatactatgt taagtgcgcc caggaggcac tgtattccat catccaaatc
901 gctggggctg cattcgtcac cacgcgcatc gctaagcgca tgaatataca gaatctctgg
961 tccaagccac aggtggaaga cacagaagag atgaccaaca aagatggttg cctaaaaccc
1021 aaagatgatg aagagtttgt cgtctcatcc gatgacatca aaactgaggg caagaaaggg
1081 aagaacaagt ccggccgtgg caagaagcac acagcctttt caagcaaagg gctcagtgat
1141 gaggagtacg atgagtacaa gagaatcaga gaagaaagga atggtaagta ctccatagaa
1201 gagtaccttc aggacagaga caggtactac gaggaggtgg ccattgccag ggcaaccgaa
1261 gaggacttct gtgaagaaga agaggccaaa atccggcaga gaattttcag accaacaagg
1321 aaacaacgca aagaggagag ggcctctctc ggcttgatca caggttctga aatcaagaag
1381 aggaacccag aagacttcaa acccaaggga aagctgtggg ctgatgatga cagaagtgtt
1441 gactacaatg agaaactcaa ctttgaggcc ccaccaagca tttggtcgcg gatagtcaac
1501 tttggttcag gctggggctt ctgggtctcc cccagtctgt ttataacatc aacccatgtc
1561 ataccccaag gtgcaaaaga gtttttcgga gtctctatca agcagatcca gatacacaaa
1621 tcaggtgaat tctgccggtt gagattccca aagccaatca gaactgatgt gacgggcatg
1681 attctagaag aaggtgcgcc cgaggggacc gtggccacac tgctcatcaa gagaccaact
1741 ggagaactca tgcctctggc agccagaatg gggacccatg caaccatgaa aattcagggg
1801 cgcacagttg gagggcaaat gggtatgctc ctgacaggat ccaacgccaa gagtatggac
1861 ctaggcacaa caccaggcga ctgcggctgc ccttacatct acaagagggg gaatgactac
1921 gtggtcatag gagtccatac ggccgctgcc cgtggaggaa acactgtcat atgtgccacc
1981 caggggagtg agggagaagc cacacttgaa ggaggtgata gtaaagggac atactgtggc
2041 gcaccaatct tgggcccagg gagcgctccg aagctcagta ccaagactaa gttttggaga
2101 tcatccacaa caccactccc acctggcacc tacgaaccag cctacctcgg tggcaaagac
2161 cccagagtca aaggtggccc ttcattgcaa caagttatga gggaccagct aaagccattc
2221 acagaaccca gaggcaaacc accaagacca aatgtgttgg aagctgccaa gaaaaccatc
2281 atcaatgtcc ttgagcaaac aattgatcca ccccaaaaat ggtcatttgc gcaagcttgc
2341 gcatcccttg acaaaaccac ctccagcggt cacccacacc acatgcggaa aaacgattgt
2401 tggaatgggg agtccttcac aggaaaattg gctgatcaag cctccaaggc caacctaatg
2461 tttgaagagg gaaagaacat gactccagtc tacacaggtg cacttaaaga tgagttggta
2521 aagaccgaca aagtttatgg taagatcaag aagaggcttc tgtggggttc agatctggcg
2581 accatgatac ggtgcgcccg agcttttgga ggccttatgg atgaactcaa ggcgcactgt
2641 gtcacacttc ctgtcagagt tggtatgaac atgaatgagg atggccccat catctttgag
2701 aagcactcca gatatagata tcactatgat gctgattatt cccggtggga ctcaacacaa
2761 caaagggatg tgctagcagc agcactagaa atcatggtta agttctctcc agagccacac
2821 ctggcccagg tagttgcaga agacctcctt tcccctagcg taatggatgt aggtgacttt
2881 caaatatcaa taagtgaggg ccttccctct ggggtacctt gcacctccca gtggaattcc
2941 atcgcccact ggctcctcac tctttgtgca ctctctgaag tcacggacct gtcccctgac
3001 atcattcagg ccaactccct tttctccttc tatggtgatg atgagattgt gagcacagac
3061 ataaagttgg acccagagaa gctgacagca aaactcaagg agtacgggct gaaaccaacc
3121 cgccccgata aaactgaagg accccttgtt atctctgaag acctcgatgg cctgacattc
3181 ctccggagaa ctgtgacccg tgacccagct ggctggtttg gaaaattgga acaaagttca
3241 attctcagac aaatgtactg gaccaggggt accaaccatg aagatccatt tgaaacaatg
3301 ataccacact cccaaagacc catacaattg atgtccttgc tgggcgaggc tgcactccac
3361 ggcccggcat tttatagcaa gattagcaaa ttagtcattg cagagttgaa ggaaggtggc
3421 atggattttt acgtgcccag acaagagcca atgttcagat ggatgagatt ctcagatctg
3481 agcacgtggg agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgag
3541 tgacgccaac ccatctgatg ggtccgcagc caacctcgtc ccagaggtca acaatgaggt
3601 tatggctctg gagcccgttg ttggtgccgc tattgcggca cctgtagcgg gccaacaaaa
3661 tgtaattgac ccctggatta gaaacaattt tgtacaagcc cctggtggag agtttacagt
3721 atcccctaga aacgctccag gtgaaatact atggagcgcg cccttgggac ctgatctaaa
3781 tccctaccta tcccatttag ccagaatgta caatggttat gcaggtggtt ttgaagtgca
3841 ggtaattctc gcggggaacg cgttcaccgc cgggaaggtc atatttgcag cagtcccacc
3901 aaattttcca actgaaggct tgagccccag ccaggtcact atgttccccc atatagtagt
3961 ggatgttagg caactagaac ctgtgttgat tcccttaccc gatgttagga ataattttta
4021 tcattataat caatcaaatg accccaccat taagttgata gcaatgttgt atactccact
4081 cagggctaac aatgctgggg atgatgtctt cacagtttct tgccgagttc tcacgagacc
4141 atcccccgat tttgatttca tatttctagt gccacccaca gttgagtcaa gaactaaacc
4201 attctctgtc ccagttttaa ctgttgagga gatgaccaat tcaagattac ccattccttt
4261 ggaaaggctg ttcacgggtc ccagcagtgc ctttgttgtt caaccacaaa acggcaggtg
4321 cacgactgat ggcgtgctcc taggcactac ccaactgtcc cctgtcaaca tctgcacctt
4381 cagaggagat gtcacccaca tcacaggtag tcataactac acaatgaatt tggcttctca
4441 aaattggaac aattatgacc caacagaaga aatcccagcc cccctaggaa ctccagactt
4501 tgtagggaag attcaaggcg tgctcaccca aaccacaagg acagatggct caacacgcgg
4561 ccacaaagcc acagtgtaca ctgggagcgc cgaatttgct ccaaaactgg gtagagtcca
4621 atttgaaact gacacaaacc atgattttga ggctaaccaa aacacaaagt tcaccccagt
4681 cggtgtcatc caagatggta gcaccaccca ccgaaatgaa ccccaacagt gggtgctccc
4741 aagttactca ggcagaaaca ctcataatgt gcatctggcc cccgctgtag cccccacctt
4801 tccgggtgag caacttctct tcttcagatc caccatgccc ggatgcagcg ggtaccccaa
4861 catggatttg gactgtctgc tcccccagga atgggtgcag tacttctacc aagaggcagc
4921 cccagcacaa tctgatgtgg ctctgctaag atttgtgaat ccagacacag gtagggtttt
4981 gtttgagtgt aagcttcaca aatcaggcta tattacagtg gctcacactg gccaacatga
5041 tttggttatt ccccccaatg gttattttag atttgattcc tgggtcaacc agttctacac
5101 gcttgccccc atgggaaatg gaacggggcg tagacgtgca gtataatggc tggagctttc
5161 tttgctggat tggcatctga tgtccttggc tctggacttg gttcccttat caatgctggg
5221 gctggggcca tcaaccaaaa agttgagttt gaaaacaaca gaaaattgca acaagcatcc
5281 ttccaattta gcagcaatct acaacaggct tcctttcaac atgacaaaga gatgctccag
5341 gcacaaattg agaccaccaa aaagttacaa caggaaatga tgaaagttaa gcaggcaatg
5401 ctcctagagg gtgggttctc tgagacggat gcagcccgcg gggcaatcaa cgcccccatg
5461 acaaaagctt tggactggag cgggacaagg tactgggctc ccgatgctag gactacaaca
5521 tacaatgcag gccgcttctc taaccctcaa ccatcggggg cactgccagg aagagctaat
5581 cttagggatg ctgtccctgc tcggagttcc tccagtaaac cttctaactc ttctactgct
5641 actactgtgt attcaaatca aactacttca acgagacttg gttctacagc tggttctggt
5701 accagtgtct cgagcctccc gtcaactgca aggactagga gttgggttga ggatcaaagt
5761 aggaatttgt cacctttcat gaggggggca cacaacatat cgtttgtcac cccaccatct
5821 agcagatcct ctagtcaagg cacagtctca accgtgccta aagaggtttt ggactcctgg
5881 actggcgctt tcaacacgcg caggcagcca ctcttcgctc acattcgtaa gcgaggggag
5941 tcacgggcgt aatgtgaaaa gac
//