Typing tool
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Typing tool
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Complete norovirus genomes
| KX158282 | GII.6 | |
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| GII.P7 |
ORF1: 11..784
ORF2: 784..2427
ORF3: 2408..7369
LOCUS KX158282 7491 bp RNA linear VRL 03-DEC-2016
DEFINITION Norovirus GII strain 14-56, complete genome.
ACCESSION KX158282
VERSION KX158282.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7491)
AUTHORS Nasheri,N., Ronholm,J. and Petronella,N.
TITLE Norovirus Genome sequencing and assembly
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7491)
AUTHORS Nasheri,N., Ronholm,J. and Petronella,N.
TITLE Direct Submission
JOURNAL Submitted (26-APR-2016) Bureau of Microbial Hazards, Health Canada,
251 Sir Frederick Banting Driveway, Ottawa, ON K1A 0K9, Canada
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 3.7.1
Assembly Name :: 14-56
Coverage :: 121x
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7491
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="14-56"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Canada"
/collection_date="2015"
/note="genotype: GII"
CDS complement(11..784)
/codon_start=1
/product="VP2"
/protein_id="APE73910.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSDPPKVKVNSDSASVYSSASFAPSQST
HSTALTAGSSSSRTTSSSAASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKAS
SYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQI"
CDS complement(784..2427)
/codon_start=1
/product="VP1"
/protein_id="APE73909.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVLGVASQRNTTGSSIGATRAHEVHIDTTNPRYTPKLGSVLMHSESTDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGIGQGRRRVQ"
CDS complement(2408..7369)
/codon_start=1
/product="ORF1"
/protein_id="APE73908.1"
/translation="MLGAVPKGTKAPSGDQHCPSVKIGTKTLTVPPEPPNGEDTVQFD
AKSETVRGLPDLTTVQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSV
YVSGGKALGVHKPPAAISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTA
FSNNCYNFCCWVLELNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAI
LCALGSLFSKPIKDLLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNIFWTPPDV
SSFIASLIGDFELQGPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKD
LGNYALDILKLVMKWFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLM
AFMKTLDLEEEKARKLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPAV
VMISGRPGIGKTHMARHLAKSIANTMSGDQRVGLIPRNGVDHWDAYRGERVVLWDDYG
MGNPVKDALTLQELADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEA
CSRRVDFLVYAESPEIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTP
HGKGTMRSLTQGSLTARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKY
GIMETMRVGTALKSVKTLEDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVE
DQTSQTANEVGAALLRLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERW
VKPTETQETSESEKEVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEY
DEFKRIREERNGKYSIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKK
QRKEERGVLGLVTGSDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIV
PLGTGWGFWVSSNLLITTTHVLPKGVKELFGVEIKQIQIHKSGEFCRFRFPRPIRPDV
TGLVLEEGAPEGTVCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGAN
AKNMDLGTGPGDCGCPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNE
NLGTYCGAPILGPGKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQ
VMRDQLKPFTEPRGKPPRPAVLEEAKKTVMNVLEQIIDPAKPWTYSQACASLDKTTSS
GSPHHVRKNDHWNGESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYK
KIKKRLLWGSDLGTMIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKY
RYHYDADYSRWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVIS
VQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDI
NLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSVARDPAGWFGKLDQD
SILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVISEIK
SGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
ORIGIN
1 aatcttttca ctaaatctgt gactcccctc gcctgcgcac atgagcgaag agaggctgcc
61 tatgggtatt gaacatagga gtccaggagt ccaaaacagc tttgggaacg gttgagaccg
121 acccatatga tgaagccttg ctcgatggtg gtgtgacaaa agttgtttgg agagcaccat
181 ccataaacgg gctaagcctc tcattttgtc ctctcaccca gtcactggtt ctagatagag
241 tggaagctgc agaagaggat gttgtcctag atgagctaga ccccgcagtc aaagccgttg
301 agtgggttga ttgtgaagga gcaaaagatg cagaactata cacactagca gaatcactat
361 taaccttgac ttttgggggg tcagaacggg gtaaagtggg ttgcctatgt acagggttgc
421 tggaaaactg gcccgaataa ctggttgtct tcatactatt tggggcgaag taccttgttc
481 cattccaatc caaaattttt gtcatcggcg cgttcacagc acctctcgcg gcatctgtgg
541 gggaaaagcc gccagcggac aagacccctt gccttatgtt catcatttcc tgctggagct
601 gtttagtggc cagtacttgt gactgcaaca tctccttgtc atgtttgaag gatgccaatt
661 ggagctgttt attaaaatca tactctacct tttgattaat tgcattggcc ccagcattga
721 ttagggaccc gacaccactt gttatggcgt cacctgccaa tccagctaag aaagctcctg
781 ccattattga acccttctgc gcccctgtcc aattcccatg ggggtgagtg tgtagaattg
841 attgacccag gcctcaaacc tgaagtaacc atttgggggc acaactatgg ggttgtttcc
901 agaatttgcc acagtgatga acccttctct atgcagtttt gcctcaaaga tgtttcttcc
961 agtgtcaggg ttgacatatc tgataagagc caccgcagac tgtgatggag cggcctcctg
1021 gtagaaatgc tgaacccact cctgtgggat gagacaatct atgtgacctg atccatagcc
1081 accagcagat ggcaccactg atctgaagaa gagaatgcgc tcaccaggga aagcaggggc
1141 aactgcgggg gccaaattca tgttaagagt aaggtgacca gaatactcag gcaattccca
1201 ttggtgccaa tcatcggctc ccatgccaat gggggtaaag cgggtaggct gtccatcatc
1261 aaaatcagtg gattcagaat gcatcaacac agagccaagc tttggggtat atctagggtt
1321 tgtggtatct atgtgcactt catgggcgcg ggttgctcct atagagctcc ctgtggtgtt
1381 tctttgacta gcgaccccaa gcacagttcc tttgaaatct atggcaccca aaactgctgg
1441 cacctcatct gttgggtcat atggtgtccc atcgaggttc ttcagctgaa cgtggagagg
1501 gtggttcctc acccgtgggg ctgaatctgt tgaatctgca gacctcgacg tctggctaat
1561 tagcgtgccc ctgaaggagc aaatttgggt gggtaccagt tgggtggtcc cttgaagtgt
1621 tccatctaga gtgcacctgc cattttgtgg ttgcaccaca attgcctcat tagggtcagt
1681 gtacaacata tctatcggag cggggaatct ggagttggac agttctccaa gagtcagaat
1741 agggagtgta aagggcttag tctttgactc cacagttggt ggcaccaaga acgtgaactc
1801 aaagtcgggg gcagggcggg tcagaactct gcaagacact gtaaacacat cctcaccaga
1861 atttgctcta aggggtgtgt acaacatagc cacaagtctc atccgagggg tgttttcctg
1921 attataatga aagaatctat tccttatatc agggaggggc aaaagcactg gctcaagctg
1981 tctcacatca acaattacat gggggcacat tgtaatttgg gctgcactaa tgttctcaac
2041 aggaaaatgt ggtgggacgg cggcaaagat gattttacca gctgtgaacg cattcccagc
2101 taggaccacc tgaacctgca taccaccagc atagccgtta tacatgcggg acaagtgact
2161 cagataagga ttgagctcag ggcctaattc aagatttaga agcatctcac caggtgagtt
2221 ccttggtgaa acagtaaact caccctgtgg tgcctgaaca aaattttctc taatccaggg
2281 gtcaattata ttttgttggc cgacgacagg agcagcaatt gaggctccca ccaccggctc
2341 aagtgccata acctcattgg tggcctctgg tacgaggttg gcagcaccat cattcgatgg
2401 agcagcgtca ttcgacgcca tcttcattca caccctcggg agcaagattg cgatcgccct
2461 cccatgtgct gaggtcagaa aatctcatcc atctgaacat ggcctcttgt ctgggcacat
2521 agaattccag accaccactt ttgatctcac taatgaccat cttgctaacc ttcttgtaaa
2581 actgggggcc atgcagtgaa gcctcaccga gaagggccat aagctgtgtg gcccgctggg
2641 aatgagggac catgctctca tatgggttct catgattggg gccccttgtc cagtacaact
2701 gtctgaggat tgagtcctgg tccaatttcc caaaccaccc agctgggtcc cgtgcaactg
2761 acctacgcag gaacgttagg ccggtgaggt cttcagttat tacgagggga ccctcagttt
2821 tgtcaggtcg agtggggacc aggccatact ctctgagttt ctgtgtcaac ttcatgggat
2881 caaggttgat gtcagtgctg actatctcat catcaccgta gaatgagaaa caggagtggg
2941 cttgaacaac atctggcgag agacccgaca cttctgccat tgcactcaag gtaaggatcc
3001 agtgtgctat tgaattccat tgtgatgtgc atggaacccc tgatggcaga ccctcctgga
3061 ctgagatgac gaaatcgcca acatctagtt ggctgggtgc caggaggtcc tctgcaacca
3121 cttgtgccag ctctggttcg gcagagaacc gcaccatcac ttccatagcg gccgagagaa
3181 tgctcctttg ctgggttgag tcccacctgg aatagtcagc atcataatga tacctatact
3241 tagaatgttt gtcaaatata atgggaccat cttcattcat gttcattcct accctacatg
3301 ggagggctat gcaacttgcc ttcatgctat ccatgagacc gccaaaagcc ctggcacacc
3361 tgatcattgt gccaagatcc gacccccata agagcctttt ctttatcttc ttgtagatct
3421 tgtcagtttt gactagttca tctttaagtg cggccgtgta tacgggctgc acatgtttgg
3481 cctgctcgta catgaggttg gctttggatg cttggtctgc aagggggcca gtgaaggatt
3541 ccccattcca atggtcattt ttcctgacat gatgggggct gccactggaa gtggtcttgt
3601 ccagtgaggc acatgcttgg gaataggtcc acggcttagc agggtcaatg atttgctcta
3661 gaacattcat cactgtcttt ttggcctctt ctaagactgc aggtctaggt ggcttgcccc
3721 tgggttctgt gaaaggtttt agctggtccc tcatgacttg ctgcagagat ggtccttttt
3781 ccactctggg gtccttaccc cccaagtagg caggctcata agtgcctggc ggcaaagcgt
3841 ctggtgatga gcgccagaac ttggtcttcg tgctaagttt gggcgccttg cctggaccca
3901 agattggggc accgcagtaa gtgccaaggt tctcatttcc ctcaaggact gcttccccat
3961 cttgcccttg agtggcacat atgacagtgt tgcctccccg ggctgctgcg gtgtggacac
4021 ccgcgacaac tatatcattg ccacgtttgt agatgtaagg gcaaccgcag tcaccaggac
4081 cggtgccaag atccatgttc ttcgcatttg cccctgtgag gagcattccc atctggccac
4141 cgacggtcct accctgtatt ttcatggatg catgcgtgcc catcctcact gccaagggga
4201 tcatctcacc tgtaggtctc tttacgagta tggagcagac agtgccttct ggagcgcctt
4261 cctccaacac gagccctgtg acatctggtc taattggtct cgggaacctg aacctgcaga
4321 actctccaga cttatggatt tgaatctgtt tgatttcaac tccaaaaagt tccttaaccc
4381 ccttaggcag gacgtgtgtc gttgtgatca ggaggtttga tgagacccag aagccccagc
4441 cagtgcccaa tgggactatt ctcgaccaga cactcggagg cgcctcgaaa tcaagtctct
4501 cgttgtagtc cacactcctg gtgtcgtctg cccacaggtt acccttcggt tgaaaatcgt
4561 ctggtcttct cttcctgatg tctgagccag tgaccaaacc aagcaccccc ctttcttcct
4621 tcctctgttt cttcgtgggg cgaaagattc tttgtcttat cttggcctcc tcctcttcac
4681 agaagtcctc ctctgtcgcc cgggcaactg ccacttcctc atagtagcga tcccggtctt
4741 gcaggtattc ctcaatggag tattttccgt tcctttcttc tctgattctc ttgaactcgt
4801 catactcctc atcactcagg cctttactgg agaaagctgt gtgtttcttg cctcttcctt
4861 tcttgttctt acccttctta ccttctggct ctgtgtcctt gggctcaatc tcccatctgc
4921 cttgggccac ttccttttcg gattcactcg tttcctgggt ctcggttggt ttgacccatc
4981 tctcccagca gaacctttta gagatcctgt tgacaacgaa tgatgctccg gcgacctgta
5041 ttagagtgta aacgagatct tggaagcagc tgacatagta tctggctctt gcctgcctga
5101 gtctaaggag tgctgcaccc acttcgtttg cagtctggga tgtttggtcc tcaactttgt
5161 caacagagac agaaccttta ccattggaag agactcggta cttggagttt ctgtaaatta
5221 tctcacactc attgaacttc acatccctca gtgcaacttt cagatcctcc aaggtcttga
5281 cactcttaag cgctgtgccc actctcatag tctccatgat cccatacttg ttgtctgcgg
5341 ccagcttcct aaatgcagag accctgttgg tatcaaagtt gtatgtttga aggtcgttcc
5401 cctggagctg aaactcgtct ctcctctcat gaacaagacc tgcaaccctt gcagtcaggg
5461 aaccctgggt tagggatcgc atggtgccct taccatgcgg ggtgttgcca ttcttatcaa
5521 atccaccctg tggggctagg gtcagtttta tgtgggaaaa gtctggctta aaatggtcct
5581 tccacatgtc aggttggccg gggaaatctc tcttaacctt ctcaatttct ggtgactctg
5641 catagaccag aaagtcgacc cttctggagc acgcctcgaa gtttacataa tcgaggggcg
5701 ccgggttgac tagattggtc gtgattatga tgacatcact gtcaaacatc ttccccttgt
5761 tctcgatcct atcacagttt agagttactg ggcaggtgtc ggccaactct tgcagtgtta
5821 gggcatcttt gacagggttt cccatgccat aatcatccca taagaccacc ctctctcccc
5881 tgtaggcgtc ccaatgatcg accccgttgc gtgggatgag tcctactctc tggtcgccgc
5941 tcatggtgtt ggcgatactc ttagccaagt gtcttgccat gtgggttttg ccaatgccag
6001 gtctacccga gatcatgaca accgcgggtc taatcctgct aaacatttct tctttagcct
6061 tgtgcaagag ggacctggca gcagctattc tggccagtat ggcattaata gtgccgacga
6121 tgtctggcga ggatgatttg gtggacagct tccttgcctt ctcctcttct agatctagag
6181 tcttcatgaa agccatgagg ctatccttgt ccttgaggag ggttgtgaga tggttgtttc
6241 ctatagcttc catgtccagg acggcatcct caatcgccct tagggtttcc atctcggctt
6301 tctcttcttt ctttgggaag aaccacttca taaccagttt caatatgtca agggcataat
6361 tccccaagtc tttgcatgcc cgtagtgttg atgcagcgga tgacagcatg cggcctatct
6421 tctcagcagt aaagccgaga accattccta tgccacccat gaccacgggg acaagctcca
6481 cagccaggtc ctcaggccct tgcaattcaa aatcacctat cagggaggct atgaaactgg
6541 aaacatctgg cggtgtccaa aagatgttga aaagttccgc cattaggatg actgtctcta
6601 ctatacccgc aaacgtccag tcacatgatg cgagcaagtg cagcaggttc aatggtttga
6661 gtttgcccaa taggtccttg attggttttg aaaacagtga tccaagtgcg cagagaattg
6721 cgttggccac cttcttgatc tttccatcat caacggttgg aaggggtttc ctattccaag
6781 actgatatgg tttgaagaag ccggtagtcc tagagatgct tctcctgcta agccacgtgt
6841 cattgagttc aagcacccag caacagaagt tgtaacagtt gttgctgaag gccgtgtagg
6901 ggaacttctc accagcaagg cctttcaacg tgtctggaca gaccagatag ttgggggtgt
6961 aaacgggcct ccaataaaga gatatgggtg tgagctctat cgtcgcgagg cttatcgctg
7021 cagggggctt gtgaacccct agggctttgc caccgctgac gtacacagag taatggtaga
7081 attcaccatc ccacatctcc agtattgtgc caggaagcgg ttcagtggct ggtctgtgct
7141 ccctttcact caatgggggg acggtgtatg gtgtgttttc gtgttcattc tgcaccgttg
7201 tcaagtctgg tagcccgcgc actgtttccg acttcgcatc aaactgcacg gtgtcttcac
7261 catttggggg ctcaggggga actgttaatg tcttggtccc aatcttaact gaggggcagt
7321 gctgatcacc actgggtgct ttggtcccct tgggaacggc acccagcatt ttcttaaaac
7381 caactttaat gttggagaat gcaccaacct cttctttatt agaaggggcg gtgttgatac
7441 tgtcattgac agagttttgg ctgccaaagg cagtggtagc gtcgttagac g
//