Typing tool
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Typing tool
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Complete norovirus genomes
| KX158281 | GII.6 | |
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| GII.P7 |
ORF1: 125..5086
ORF2: 5067..6710
ORF3: 6710..7513
LOCUS KX158281 7539 bp RNA linear VRL 03-DEC-2016
DEFINITION Norovirus GII strain 14-55, complete genome.
ACCESSION KX158281
VERSION KX158281.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7539)
AUTHORS Nasheri,N., Ronholm,J. and Petronella,N.
TITLE Norovirus Genome sequencing and assembly
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7539)
AUTHORS Nasheri,N., Ronholm,J. and Petronella,N.
TITLE Direct Submission
JOURNAL Submitted (26-APR-2016) Bureau of Microbial Hazards, Health Canada,
251 Sir Frederick Banting Driveway, Ottawa, ON K1A 0K9, Canada
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 3.7.1
Assembly Name :: 14-55
Coverage :: 223x
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7539
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="14-55"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Canada"
/collection_date="2015"
/note="genotype: GII"
CDS 125..5086
/codon_start=1
/product="ORF1"
/protein_id="APE73905.1"
/translation="MLGAVPKGTKAPSGDQHCPSVKIGTKTLTVPPEPPNGEDTVQFD
AKSETVRGLPDLTTVQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSV
YVSGGKALGVHKPPAAISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTA
FSNNCYNFCCWVLELNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAI
LCALGSLFSKPIKDLLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNIFWTPPDV
SSFIASLIGDFELQGPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKD
LGNYALDILKLVMKWFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLM
AFMKTLDLEEEKARKLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPAV
VMISGRPGIGKTHMARHLAKSIANTMSGDQRVGLIPRNGVDHWDAYRGERVVLWDDYG
MGNPVKDALTLQELADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEA
CSRRVDFLVYAESPEIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTP
HGKGTMRSLTQGSLTARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKY
GIMETMRVGTALKSVKTLEDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVE
DQTSQTANEVGAALLRLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERW
VKPTETQETSESEKEVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEY
DEFKRIREERNGKYSIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKK
QRKEERGVLGLVTGSDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIV
PLGTGWGFWVSSNLLITTTHVLPKGVKELFGVEIKQIQIHKSGEFCRFRFPRPIRPDV
TGLVLEEGAPEGTVCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGAN
AKNMDLGTGPGDCGCPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNE
NLGTYCGAPILGPGKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQ
VMRDQLKPFTEPRGKPPRPAVLEEAKKTVMNVLEQIIDPAKPWTYSQACASLDKTTSS
GSPHHVRKNDHWNGESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYK
KIKKRLLWGSDLGTMIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKY
RYHYDADYSRWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVIS
VQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDI
NLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSVARDPAGWFGKLDQD
SILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVISEIK
SGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
CDS 5067..6710
/codon_start=1
/product="VP1"
/protein_id="APE73906.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVLGVASQRNTTGSSIGATRAHEVHIDTTNPRYTPKLGSVLMHSESTDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGIGQGRRRVQ"
CDS 6710..7513
/codon_start=1
/product="VP2"
/protein_id="APE73907.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSDPPKVKVNSDSASVYSSASFAPSQST
HSTALTAGSSSSRTTSSSAASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKAS
SYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQTKPFTLPILTL"
ORIGIN
1 ggcgtctaac gacgctacca ctgcctttgg cagccaaaac tctgtcaatg acagtatcaa
61 caccgcccct tctaataaag aagaggttgg tgcattctcc aacattaaag ttggttttaa
121 gaaaatgctg ggtgccgttc ccaaggggac caaagcaccc agtggtgatc agcactgccc
181 ctcagttaag attgggacca agacattaac agttccccct gagcccccaa atggtgaaga
241 caccgtgcag tttgatgcga agtcggaaac agtgcgcggg ctaccagact tgacaacggt
301 gcagaatgaa cacgaaaaca caccatacac cgtcccccca ttgagtgaaa gggagcacag
361 accagccact gaaccgcttc ctggcacaat actggagatg tgggatggtg aattctacca
421 ttactctgtg tacgtcagcg gtggcaaagc cctaggggtt cacaagcccc ctgcagcgat
481 aagcctcgcg acgatagagc tcacacccat atctctttat tggaggcccg tttacacccc
541 caactatctg gtctgtccag acacgttgaa aggccttgct ggtgagaagt tcccctacac
601 ggccttcagc aacaactgtt acaacttctg ttgctgggtg cttgaactca atgacacgtg
661 gcttagcagg agaagcatct ctaggactac cggcttcttc aaaccatatc agtcttggaa
721 taggaaaccc cttccaaccg ttgatgatgg aaagatcaag aaggtggcca acgcaattct
781 ctgcgcactt ggatcactgt tttcaaaacc aatcaaggac ctattgggca aactcaaacc
841 attgaacctg ctgcacttgc tcgcatcatg tgactggacg tttgcgggta tagtagagac
901 agtcatccta atggcggaac ttttcaacat cttttggaca ccgccagatg tttccagttt
961 catagcctcc ctgataggtg attttgaatt gcaagggcct gaggacctgg ctgtggagct
1021 tgtccccgtg gtcatgggtg gcataggaat ggttctcggc tttactgctg agaagatagg
1081 ccgcatgctg tcatccgctg catcaacact acgggcatgc aaagacttgg ggaattatgc
1141 ccttgacata ttgaaactgg ttatgaagtg gttcttccca aagaaagaag agaaagccga
1201 gatggaaacc ctaagggcga ttgaggatgc cgtcctggac atggaagcta taggaaacaa
1261 ccatctcaca accctcctca aggacaagga tagcctcatg gctttcatga agactctaga
1321 tctagaagag gagaaggcaa ggaagctgtc caccaaatca tcctcgccag acatcgtcgg
1381 cactattaat gccatactgg ccagaatagc tgctgccagg tccctcttgc acaaggctaa
1441 agaagaaatg tttagcagga ttagacccgc ggttgtcatg atctcgggta gacctggcat
1501 tggcaaaacc cacatggcaa gacacttggc taagagtatc gccaacacca tgagcggcga
1561 ccagagagta ggactcatcc cacgcaacgg ggtcgatcat tgggacgcct acaggggaga
1621 gagggtggtc ttatgggatg attatggcat gggaaaccct gtcaaagatg ccctaacact
1681 gcaagagttg gccgacacct gcccagtaac tctaaactgt gataggatcg agaacaaggg
1741 gaagatgttt gacagtgatg tcatcataat cacgaccaat ctagtcaacc cggcgcccct
1801 cgattatgta aacttcgagg cgtgctccag aagggtcgac tttctggtct atgcagagtc
1861 accagaaatt gagaaggtta agagagattt ccccggccaa cctgacatgt ggaaggacca
1921 ttttaagcca gacttttccc acataaaact gaccctagcc ccacagggtg gatttgataa
1981 gaatggcaac accccgcatg gtaagggcac catgcgatcc ctaacccagg gttccctgac
2041 tgcaagggtt gcaggtcttg ttcatgagag gagagacgag tttcagctcc aggggaacga
2101 ccttcaaaca tacaactttg ataccaacag ggtctctgca tttaggaagc tggccgcaga
2161 caacaagtat gggatcatgg agactatgag agtgggcaca gcgcttaaga gtgtcaagac
2221 cttggaggat ctgaaagttg cactgaggga tgtgaagttc aatgagtgtg agataattta
2281 cagaaactcc aagtaccgag tctcttccaa tggtaaaggt tctgtctctg ttgacaaagt
2341 tgaggaccaa acatcccaga ctgcaaacga agtgggtgca gcactcctta gactcaggca
2401 ggcaagagcc agatactatg tcagctgctt ccaagatctc gtttacactc taatacaggt
2461 cgccggagca tcattcgttg tcaacaggat ctctaaaagg ttctgctggg agagatgggt
2521 caaaccaacc gagacccagg aaacgagtga atccgaaaag gaagtggccc aaggcagatg
2581 ggagattgag cccaaggaca cagagccaga aggtaagaag ggtaagaaca agaaaggaag
2641 aggcaagaaa cacacagctt tctccagtaa aggcctgagt gatgaggagt atgacgagtt
2701 caagagaatc agagaagaaa ggaacggaaa atactccatt gaggaatacc tgcaagaccg
2761 ggatcgctac tatgaggaag tggcagttgc ccgggcgaca gaggaggact tctgtgaaga
2821 ggaggaggcc aagataagac aaagaatctt tcgccccacg aagaaacaga ggaaggaaga
2881 aaggggggtg cttggtttgg tcactggctc agacatcagg aagagaagac cagacgattt
2941 tcaaccgaag ggtaacctgt gggcagacga caccaggagt gtggactaca acgagagact
3001 tgatttcgag gcgcctccga gtgtctggtc gagaatagtc ccattgggca ctggctgggg
3061 cttctgggtc tcatcaaacc tcctgatcac aacaacacac gtcctgccta agggggttaa
3121 ggaacttttt ggagttgaaa tcaaacagat tcaaatccat aagtctggag agttctgcag
3181 gttcaggttc ccgagaccaa ttagaccaga tgtcacaggg ctcgtgttgg aggaaggcgc
3241 tccagaaggc actgtctgct ccatactcgt aaagagacct acaggtgaga tgatcccctt
3301 ggcagtgagg atgggcacgc atgcatccat gaaaatacag ggtaggaccg tcggtggcca
3361 gatgggaatg ctcctcacag gggcaaatgc gaagaacatg gatcttggca ccggtcctgg
3421 tgactgcggt tgcccttaca tctacaaacg tggcaatgat atagttgtcg cgggtgtcca
3481 caccgcagca gcccggggag gcaacactgt catatgtgcc actcaagggc aagatgggga
3541 agcagtcctt gagggaaatg agaaccttgg cacttactgc ggtgccccaa tcttgggtcc
3601 aggcaaggcg cccaaactta gcacgaagac caagttctgg cgctcatcac cagacgcttt
3661 gccgccaggc acttatgagc ctgcctactt ggggggtaag gaccccagag tggaaaaagg
3721 accatctctg cagcaagtca tgagggacca gctaaaacct ttcacagaac ccaggggcaa
3781 gccacctaga cctgcagtct tagaagaggc caaaaagaca gtgatgaatg ttctagagca
3841 aatcattgac cctgctaagc cgtggaccta ttcccaagca tgtgcctcac tggacaagac
3901 cacttccagt ggcagccccc atcatgtcag gaaaaatgac cattggaatg gggaatcctt
3961 cactggcccc cttgcagacc aagcatccaa agccaacctc atgtacgagc aggccaaaca
4021 tgtgcagccc gtatacacgg ccgcacttaa agatgaacta gtcaaaactg acaagatcta
4081 caagaagata aagaaaaggc tcttatgggg gtcggatctt ggcacaatga tcaggtgtgc
4141 cagggctttt ggcggtctca tggatagcat gaaggcaagt tgcatagccc tcccatgtag
4201 ggtaggaatg aacatgaatg aagatggtcc cattatattt gacaaacatt ctaagtatag
4261 gtatcattat gatgctgact attccaggtg ggactcaacc cagcaaagga gcattctctc
4321 ggccgctatg gaagtgatgg tgcggttctc tgccgaacca gagctggcac aagtggttgc
4381 agaggacctc ctggcaccca gccaactaga tgttggcgat ttcgtcatct cagtccagga
4441 gggtctgcca tcaggggttc catgcacatc acaatggaat tcaatagcac actggatcct
4501 taccttgagt gcaatggcag aagtgtcggg tctctcgcca gatgttgttc aagcccactc
4561 ctgtttctca ttctacggtg atgatgagat agtcagcact gacatcaacc ttgatcccat
4621 gaagttgaca cagaaactca gagagtatgg cctggtcccc actcgacctg acaaaactga
4681 gggtcccctc gtaataactg aagacctcac cggcctaacg ttcctgcgta ggtcagttgc
4741 acgggaccca gctgggtggt ttgggaaatt ggaccaggac tcaatcctca gacagttgta
4801 ctggacaagg ggccccaatc atgagaaccc atatgagagc atggtccctc attcccagcg
4861 ggccacacag cttatggccc ttctcggtga ggcttcactg catggccccc agttttacaa
4921 gaaggttagc aagatggtca ttagtgagat caaaagtggt ggtctggaat tctatgtgcc
4981 cagacaagag gccatgttca gatggatgag attttctgac ctcagcacat gggagggcga
5041 tcgcaatctt gctcccgagg gtgtgaatga agatggcgtc gaatgacgct gctccatcga
5101 atgatggtgc tgccaacctc gtaccagagg ccaccaatga ggttatggca cttgagccgg
5161 tggtgggagc ctcaattgct gctcctgtcg tcggccaaca aaatataatt gacccctgga
5221 ttagagaaaa ttttgttcag gcaccacagg gtgagtttac tgtttcacca aggaactcac
5281 ctggtgagat gcttctaaat cttgaattag gccctgagct caatccttat ctgagtcact
5341 tgtcccgcat gtataacggc tatgctggtg gtatgcaggt tcaggtggtc ctagctggga
5401 atgcgttcac agctggtaaa atcatctttg ccgccgtccc accacatttt cctgttgaga
5461 acattagtgc agcccaaatt acaatgtgcc cccatgtaat tgttgatgtg agacagcttg
5521 agccagtgct tttgcccctc cctgatataa ggaatagatt ctttcattat aatcaggaaa
5581 acacccctcg gatgagactt gtggctatgt tgtacacacc ccttagagca aattctggtg
5641 aggatgtgtt tacagtgtct tgcagagttc tgacccgccc tgcccccgac tttgagttca
5701 cgttcttggt gccaccaact gtggagtcaa agactaagcc ctttacactc cctattctga
5761 ctcttggaga actgtccaac tccagattcc ccgctccgat agatatgttg tacactgacc
5821 ctaatgaggc aattgtggtg caaccacaaa atggcaggtg cactctagat ggaacacttc
5881 aagggaccac ccaactggta cccacccaaa tttgctcctt caggggcacg ctaattagcc
5941 agacgtcgag gtctgcagat tcaacagatt cagccccacg ggtgaggaac caccctctcc
6001 acgttcagct gaagaacctc gatgggacac catatgaccc aacagatgag gtgccagcag
6061 ttttgggtgc catagatttc aaaggaactg tgcttggggt cgctagtcaa agaaacacca
6121 cagggagctc tataggagca acccgcgccc atgaagtgca catagatacc acaaacccta
6181 gatatacccc aaagcttggc tctgtgttga tgcattctga atccactgat tttgatgatg
6241 gacagcctac ccgctttacc cccattggca tgggagccga tgattggcac caatgggaat
6301 tgcctgagta ttctggtcac cttactctta acatgaattt ggcccccgca gttgcccctg
6361 ctttccctgg tgagcgcatt ctcttcttca gatcagtggt gccatctgct ggtggctatg
6421 gatcaggtca catagattgt ctcatcccac aggagtgggt tcagcatttc taccaggagg
6481 ccgctccatc acagtctgcg gtggctctta tcagatatgt caaccctgac actggaagaa
6541 acatctttga ggcaaaactg catagagaag ggttcatcac tgtggcaaat tctggaaaca
6601 accccatagt tgtgccccca aatggttact tcaggtttga ggcctgggtc aatcaattct
6661 acacactcac ccccatggga attggacagg ggcgcagaag ggttcaataa tggcaggagc
6721 tttcttagct ggattggcag gtgacgccat aacaagtggt gtcgggtccc taatcaatgc
6781 tggggccaat gcaattaatc aaaaggtaga gtatgatttt aataaacagc tccaattggc
6841 atccttcaaa catgacaagg agatgttgca gtcacaagta ctggccacta aacagctcca
6901 gcaggaaatg atgaacataa ggcaaggggt cttgtccgct ggcggctttt cccccacaga
6961 tgccgcgaga ggtgctgtga acgcgccgat gacaaaaatt ttggattgga atggaacaag
7021 gtacttcgcc ccaaatagta tgaagacaac cagttattcg ggccagtttt ccagcaaccc
7081 tgtacatagg caacccactt taccccgttc tgacccccca aaagtcaagg ttaatagtga
7141 ttctgctagt gtgtatagtt ctgcatcttt tgctccttca caatcaaccc actcaacggc
7201 tttgactgcg gggtctagct catctaggac aacatcctct tctgcagctt ccactctatc
7261 tagaaccagt gactgggtga gaggacaaaa tgagaggctt agcccgttta tggatggtgc
7321 tctccaaaca acttttgtca caccaccatc gagcaaggct tcatcatatg ggtcggtctc
7381 aaccgttccc aaagctgttt tggactcctg gactcctatg ttcaataccc ataggcagcc
7441 tctcttcgct catgtgcgca ggcgagggga gtcacagact aagcccttta cactccctat
7501 tctgactctt tgagaacttt ccaactccag attccccgc
//