Typing tool
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Typing tool
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Complete norovirus genomes
| KX079488 | GII.21 | |
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| GII.P21 |
ORF1: 5..5104
ORF2: 5085..6707
ORF3: 6707..7465
LOCUS KX079488 7510 bp RNA linear VRL 08-JUN-2016
DEFINITION Norovirus GII.21 strain NoV/Kor/JW, complete genome.
ACCESSION KX079488
VERSION KX079488.1
KEYWORDS .
SOURCE Norovirus GII.21
ORGANISM Norovirus GII.21
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7510)
AUTHORS Lee,J.W. and Paik,S.-Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2016) Department of Microbiology, College of
Medicine, The Catholic University of Korea, 222 Banpo-daero,
Seocho-gu, Seoul 06591, Korea
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7510
/organism="Norovirus GII.21"
/mol_type="genomic RNA"
/strain="NoV/Kor/JW"
/host="Homo sapiens"
/db_xref="taxon:1073050"
/country="South Korea"
/collection_date="01-Apr-2015"
gene 5..5104
/gene="ORF1"
CDS 5..5104
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="ANI70129.1"
/translation="MKMASNDASAAAAANSNNDNAKSSSDGVLSNMAVTFKRALGARS
KQPSPRDKPPRPPRPPTPELVKQIPPPPPNGEDEPTISYNVKEGVSGLPELSTVTQPE
ESSTAFSVPPLSQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELSPLSLYWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMVQRTTGFFRPYQDWNRKPLPTMDDSKVKKVANVLLCALSSLFTRPIKDIIGK
LKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKDEINELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLAAYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKKIASSLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEK
AKRDFPGQPDMWKDTFKPDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTASSLVARA
SGLLHERLDEYELQGPTSTTFNFDRNKVLAFRQLAAENKYGLVDTMRVGSQLKNVKTM
TELKQALKNITVKKCQLVYGGSTYTLESDGKGNVCVEKVKNTSVQTNNELSGVLHHLR
CARIRYYVKCVQEALYSILQIAGAAFITTRIAKRMNIQNLWSKPQVEDLEETSNREGC
PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLDFEAPPSIWSRIVNFGLGWGFWVSP
SLFITSTHVIPKGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEAMLEGGDNKGTYCGAPILG
PGNAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVGGGPSLQQVMREQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPQRWTYAQACASLDKTTSSGHPHHMRKNECW
NGEAFTGKLADQASKANLMYEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
STMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTVKLK
EYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5085..6707
/gene="ORF2"
CDS 5085..6707
/gene="ORF2"
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="ANI70130.1"
/translation="MKMASNDAAPSNDGAAGLVPEINTETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRNNFVQAPNGEFTVSPRNSPGEILMNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVDMLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNVFYHFNNQPAPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFTLPILTIGELTNSRFPAPIDQLYTSPNADVVVQPQNGRCTLDGELQGTT
QLLTTAICSYRGTTSNPTSDYWDDHLLHLVHPNGATYDPTEDVPAPFGTQDFRGILYG
VLTQNTQNPRDEVSNSRGIYISSTSDKFTPKLGTIGLHQVQGDTASNQQSKFTPVGIA
VNQNTPFKQWELPNYSGALTLNTNLAPAVGPNFPGEQILFFRSNVPSVQGNHPTQEID
CLIPQEWVSHFYQESAPSQSDVALVRYVNPDTGRTIFEAKLHRQGFITIAATGSNPVV
VPPNGYFRFDSWVNQFYALAPMGTGNGRRRAQ"
gene 6707..7465
/gene="ORF3"
CDS 6707..7465
/gene="ORF3"
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="ANI70131.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVTAGANAINQKVEYDLTKQLQSA
SFQHDKDMLQAQVNATKQLQSDMMAIKAGVLTAGGFSPADAARGAVNAPMTKVLDWSG
TRYWAPNSTKTTSQSGQFSFVNVHRPFVQSKTVQPSPPRAPSSSGSVRSLSTQSTMLS
NSSFSSLGTPSTQSTNLSSSRTADWVRSQRNLSPYMDGALQTAFVTPPSSRASSTGTV
STVPRGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgccaaca gcaacaacga
61 caacgcaaaa tcttcaagtg acggcgtatt atccaatatg gctgtcactt ttaaacgagc
121 cctcggggcg cggtccaaac aaccgtcccc gagggacaaa ccaccaagac ccccgagacc
181 acccacacca gagttggtta aacaaatccc ccctccccca cccaacgggg aggacgagcc
241 aaccatttct tacaacgtca aagagggtgt ttctggtttg cctgaactct caacggtcac
301 ccaaccggaa gagagctcta cggcattcag cgttccccct cttagtcaga gggagaacag
361 agacgcaaag gaacccctaa ctggaaccat cctggagatg tgggacgggg agatctacca
421 ttatggctta tatgtggaac gaggattagt gctcggtgta cacaaaccac cagcagccat
481 cagccttgct aaggttgaac tgtccccctt gtctttgtac tggagacctg tgtacacccc
541 acagtacctc atttcccctg acactctcaa aaagttgcat ggggagacgt tcccttacac
601 agcctttgac aacaactgtt atgccttctg ctgttgggtt cttgacttga acgattcatg
661 gctgagcaga aggatggtac agaggacaac gggcttcttt cggccttacc aggactggaa
721 cagaaaaccc ctccccacaa tggacgactc caaagtgaag aaggtggcca atgttctcct
781 ctgtgctctc tcatcattgt tcactagacc aattaaggac attattggaa agttaaaacc
841 cctaaatatc ctcaacatcc tagccacatg tgattggact tttgcaggca tagtagaatc
901 cctgatcctc ttggctgaac tgtttggagt tttctggaca cccccagatg tgtctgcaat
961 gatcgctccc ttactgggtg attatgagct acaggggcct gaggacctcg ctgtggaact
1021 cgtacctgta gtaatgggag ggataggttt ggtgctggga ttcaccaaag agaaaattgg
1081 caaaatgctt tcatctgctg cttcaaccct gagggcgtgc aaagatctcg gagcttatgg
1141 gctggagata ctcaaattgg tcatgaagtg gtttttccca aagaaagacg agataaacga
1201 attggcaatg gtgagatcca tcgaggacgc agtgctggac ctcgaggcca tcgagaacaa
1261 ccatatgaca gctctactca aggataagga cagccttgca gcctacatga ggactcttga
1321 cttggaggag gagaaggcga ggaagttgtc caccaagtct gcatcaccgg acatcgtggg
1381 cacgatcaat gccctactgg caaggattgc agctgcccga tctctagtac acagggctaa
1441 ggaagaactg tctagcagac ctcgaccggt cgttgtgatg atttcaggga gaccaggtat
1501 agggaagacc catctagcta gagagttggc aaagaagatt gcctcctcac tcacaggtga
1561 ccagagggtg ggcctcatcc cacgcaacgg ggtcgaccac tgggatgcat acaaaggtga
1621 aagagtcgtc ctctgggacg actacggaat gagcaaccct atccacgacg ccctcagact
1681 ccaggagctt gctgacacct gccccctaac acttaattgt gacaggattg aaaacaaagg
1741 taaagtcttt gacagtgacg ccataataat aaccaccaat ttggccaacc cagcgccact
1801 ggattatgtc aactttgaag cttgctcaag acgcatagac ttcctcgtct atgctgatgc
1861 ccctgaagtt gagaaggcta aacgagactt cccaggccag ccagacatgt ggaaggacac
1921 cttcaaacct gacttctcac acataaaact gacattagcc ccacaaggag gttttgacaa
1981 gaacggcaat acccctcatg ggaagggtgt tatgaagacc ctcactgcta gttccctcgt
2041 tgcccgagca tcagggctcc tccacgagag actagacgag tatgagctgc aaggcccaac
2101 ttccacaaca ttcaacttcg accgcaacaa ggtgcttgct tttaggcaac tcgctgctga
2161 gaacaagtac ggtctcgttg atacaatgag ggtcggatca caactcaaga atgtcaaaac
2221 catgacagaa ctcaaacagg ctctcaagaa catcacagtc aagaaatgcc agcttgtgta
2281 tggcgggagc acatacacac tcgaatctga tggcaaaggc aatgtgtgtg ttgagaaggt
2341 gaagaacaca agtgtgcaga ctaacaacga gctctccggc gttctgcacc atctcaggtg
2401 tgccaggatt aggtactatg ttaagtgtgt ccaggaagct ctctactcca tcttgcaaat
2461 tgccggggct gcattcatca ccacgcgcat tgcaaagcgc atgaacatac aaaacctatg
2521 gtccaaacca caagtggaag atttggagga gactagcaac agggagggct gtccaaaacc
2581 taaagatgat gaggaatttg ttatctcctc tgatgacatc aaaaccgagg gcaagaaagg
2641 aaagaacaag actggccgtg gcaagaagca cacagccttt tccagcaaag gtctcagtga
2701 tgaggagtac gatgagtaca agagaatcag agaagagaga aatggcaagt actccataga
2761 ggaataccta caggacagag acaagtacta tgaggaggtg gccatagcca gggcaactga
2821 ggaagatttc tgtgaggaag aggaggccaa aatccggcaa aggatattta gaccaacaag
2881 aaagcaacgc aaagaggaaa gggcctctct tggtttggtc acaggttctg agattaggaa
2941 gagaaatcca gatgacttca aacctaaagg gaagctatgg gctgatgatg acaggagtgt
3001 tgactacaat gagaaacttg acttcgaggc tccaccaagc atttggtcac gaatagttaa
3061 ctttggttta gggtggggct tctgggtctc gcctagcctc ttcataacat caacccacgt
3121 cattcccaaa ggtgcacagg agttctttgg agtgcctatc aagcaaatac aaattcataa
3181 atcaggagag ttctgccggc taagatttcc aaaaccaatc aggacagatg tcacgggcat
3241 gatcttagag gaaggtgctc cagaaggaac tgttgccaca cttctcatca agagaccaac
3301 tggggaactc atgcccttgg cagccagaat gggtacccac gcgaccatga aaatccaggg
3361 tcgcactgtt ggtgggcaga tgggcatgct actcacgggg tctaacgcca agagtatgga
3421 tttgggcaca actcctggtg actgtggctg tccctacatc tacaagaggg ggaacgacta
3481 cgtggtcatt ggagtccaca ccgccgctgc ccgtggagga aacactgtca tctgtgcaac
3541 ccaaggaagt gagggtgaag ccatgctaga gggtggcgac aataagggaa cctactgtgg
3601 agcaccaata ttaggccctg gaaatgcccc taaactcagt accaaaacca aattctggag
3661 gtcttctacc acccccctgc cacccggaac ctatgaacca gcttatctgg gtggcaagga
3721 ccccagagtg gggggtggtc cctcactgca acaggttatg agggagcaac taaaaccatt
3781 cactgagccc agaggcaaac caccaaaacc tagtgtgcta gaagctgcca agaagactat
3841 aatcaatgtg cttgaacaga caatagaccc acctcaaaga tggacatacg cacaggcgtg
3901 tgcatcacta gataagacca cttccagcgg ccaccctcac cacatgcgga agaacgagtg
3961 ctggaacgga gaggctttca caggaaaatt ggcagaccaa gcatcaaaag ctaatttaat
4021 gtatgaggaa ggaaagaaca tgaccccagt atacacagga gctctgaagg acgaactagt
4081 caagactgat aagatctatg ggaagatcaa aaagagactc ctatggggtt cagacctatc
4141 aaccatgata cggtgtgcac gagctttcgg tgggctgatg gacgagctca aggcccattg
4201 cgtcacacta ccagttaggg ttggcatgaa catgaatgag gatggaccca taatatttga
4261 gaaacattcc agatacagat accattatga tgcagattac tctcgctggg actcgacaca
4321 gcaaagagca gtgctggctg cagccctgga aataatggtc aaattttcac cagaacctca
4381 tctggcccaa gtagttgcag aagacctctt gtcccccagt gtgatggatg tgggtgattt
4441 caagatttca atcaacgagg ggttaccctc tggtgtgcct tgcacctcac aatggaactc
4501 cattgctcac tggctcctca cactgtgtgc actgtctgaa gttacagatc tgtcccctga
4561 catcatccag gcaaactccc tattctcctt ttatggtgat gatgaaatag tgagcacaga
4621 catcaaattg gacccagaga aactgacagt aaagttgaag gaatacgggt taaaaccaac
4681 ccgtcctgat aaaacagaag gacccttaat tatctctgaa gatttggatg gcctgacctt
4741 cttacggaga acggtgactc gcgatccggc tgggtggttt ggcaaactgg accaaagttc
4801 aatactcagg caaatgtact ggaccagggg accaaaccat gaggacccct ctgaaacaat
4861 gataccacac tcccaaagac ccatacaact gatgtcacta ctaggtgaag ctgcactaca
4921 tggcccatca ttctatagta aaatcagcaa gttggtcatc tcagaattga aagagggtgg
4981 gatggacttt tacgtgccca gacaagaacc aatgtttagg tggatgagat tctcagattt
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccgc tccatctaat gatggtgctg caggtctcgt accagagatc aacactgaga
5161 ccttgcccct cgagcccgtg gccggagcgg caattgctgc ccctgttacg ggccaaaata
5221 atataattga tccctggatt agaaacaatt ttgtgcaggc ccctaatggt gagtttacag
5281 tctcccctag aaattcccct ggtgaaattt taatgaattt ggagctaggg ccagatctta
5341 atccatattt ggctcacctt tcaagaatgt acaatggtta tgctggagga gtggaagtgc
5401 aagtgctcct agctgggaat gcgttcacgg caggaaagat cctttttgca gcagtccccc
5461 caaatttccc cgttgatatg cttagtcctg ctcaaatcac aatgcttccc catttaattg
5521 tagatgtcag aactttggag cccattatga tccctctgcc tgatgttagg aacgttttct
5581 atcactttaa taaccagcct gccccaagaa tgagattggt tgctatgctc tacactcctt
5641 taagatccaa tgggtccggt gatgatgtat tcactgtctc ctgcagggtg ctaaccagac
5701 ctactccgga ctttgagttt acatatttag ttcccccctc ggtagagtct aaaaccaagc
5761 ctttcaccct acccatccta acaattggag agttgacaaa ttctagattc ccagccccga
5821 tcgatcagtt gtacacttca cccaacgctg atgtagttgt ccaaccccaa aatggccggt
5881 gcacactgga cggtgagcta caaggcacaa cacaacttct gacaacggca atatgttcat
5941 acaggggcac aacatcaaac cccactagtg actactggga tgatcacctc ctgcacttgg
6001 tccaccccaa tggggcaaca tatgacccga ccgaggacgt gccagctcct tttggcacgc
6061 aggactttcg gggcattctg tatggggtgt tgactcaaaa cacccaaaat cccagggacg
6121 aagtctccaa ctcccgtggg atctacatct catccactag tgacaagttc actccaaaat
6181 tgggtacaat tggcttacac caagtgcaag gcgacacagc cagcaaccaa caatcaaaat
6241 tcacaccagt agggatagcg gtgaatcaaa acactccttt caaacagtgg gaactcccaa
6301 actactctgg tgccctcacc ctcaacacaa accttgcacc agcggttggg cccaacttcc
6361 ctggggagca aatccttttc ttcaggtcaa atgtcccaag tgttcaaggt aaccacccta
6421 ctcaagagat tgattgcctg atcccacaag aatgggtttc ccacttctat caagaatcag
6481 ctccctctca gagtgatgtg gctttggtca ggtatgtcaa tcctgacaca gggcgcacaa
6541 tctttgaggc caaactgcat aggcagggat ttatcaccat agcggccact ggaagcaacc
6601 ccgtggtcgt gccccccaat gggtacttca gatttgattc ctgggtcaac cagttttatg
6661 cactcgcccc catgggaact gggaatgggc gcagaagagc tcaataatgg ctggagcttt
6721 tatagcagga ttggcaggtg acatgctcac caatactgtt ggttccctgg taacagcggg
6781 ggctaatgct ataaaccaaa aagttgaata tgacctcacc aaacaactgc aaagtgcctc
6841 cttccaacat gacaaggaca tgcttcaagc ccaggtcaac gcaacaaaac aattgcagag
6901 tgacatgatg gccatcaaag caggggtttt gaccgctggc ggcttttccc ctgctgatgc
6961 agccagaggg gcagtcaatg ctccaatgac aaaagtctta gactggtcag ggacgcgtta
7021 ctgggcaccc aattcaacca aaacaacaag ccaatctggt cagttctcct ttgtaaatgt
7081 gcatagaccc tttgttcaat caaaaactgt ccaaccatct cctccgcggg cgccctcatc
7141 ttcgggtagc gttcgcagcc tttctactca atcaacaatg ctttcaaatt ctagcttttc
7201 ttcccttggg actccttcaa ctcagtcaac aaatctttct tcttctcgaa cggcggactg
7261 ggttcgaagt cagaggaacc tgagccccta catggacggg gctctgcaga cagcctttgt
7321 caccccacca tcaagcagag cttcttctac aggcaccgtc tcaacagtgc ctagaggggt
7381 tttggactcc tggacacctg cgttcaacac ccgcaggcag ccgcttttcg cacacctcag
7441 gaagaggggg gagtcacaag cctagtgaaa agaatcactt taataaattc ttttaaaaaa
7501 aaaaaaaaaa
//