Typing tool
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Typing tool
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Complete norovirus genomes
| KX024652 | GII.17 | |
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| GII.P17 |
ORF1: 1..780
ORF2: 761..2383
ORF3: 2383..3162
LOCUS KX024652 3239 bp RNA linear VRL 28-MAY-2016
DEFINITION Norovirus GII.17 strain Hu/GII.17/HUN5737/2015/HUN nonstructural
polyprotein (ORF1) gene, partial cds; and capsid protein VP1 (VP1)
and capsid protein VP2 (VP2) genes, complete cds.
ACCESSION KX024652
VERSION KX024652.1
KEYWORDS .
SOURCE Norovirus GII.17
ORGANISM Norovirus GII.17
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3239)
AUTHORS Reuter,G. and Pankovics,P.
TITLE Norovirus GII.17-2014 (Kawasaki) pandemic and the epidemiological
situation in Hungary
JOURNAL Epinfo 23 (2), 13-19 (2016)
REFERENCE 2 (bases 1 to 3239)
AUTHORS Reuter,G. and Pankovics,P.
TITLE Direct Submission
JOURNAL Submitted (05-APR-2016) Regional Laboratory of Virology, ANTSZ
Baranya County Institute of State Public Health Service, Szabadsag
u. 7., Pecs, Baranya H-7623, Hungary
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3239
/organism="Norovirus GII.17"
/mol_type="genomic RNA"
/strain="Hu/GII.17/HUN5737/2015/HUN"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:552592"
/geo_loc_name="Hungary"
/collection_date="19-Oct-2015"
/note="genotype: GII.17"
gene <1..780
/gene="ORF1"
CDS <1..780
/gene="ORF1"
/note="RdRp"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="ANG57126.1"
/translation="RAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAIN
EGLPSGVPCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKL
DPEKLTAKLKEYGLKPTRPDKTEGPLVVSEDLNGLTFLRRTVTRDPAGWFGKLDQNSI
LRQLYWTRGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEG
GMDFYVPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 761..2383
/gene="VP1"
CDS 761..2383
/gene="VP1"
/note="ORF2"
/codon_start=1
/product="capsid protein VP1"
/protein_id="ANG57127.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFHPTKFTPVGVN
DDNDGPPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 2383..3162
/gene="VP2"
CDS 2383..3162
/gene="VP2"
/note="ORF3"
/codon_start=1
/product="capsid protein VP2"
/protein_id="ANG57128.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTRTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKSTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSYGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 cgggcagtgc tggaagcggc acttgaaatc atggtgagat tttctgctga gccacagctg
61 gcacaaatag tggcagagga cctgctgtca ccaagtgtgg ttgatgtggg cgatttcaaa
121 atcgctatca atgaaggcct accatctggc gtgccttgca cctcacaatg gaattctatt
181 gcccactggt tacttacctt gtgtgccctt tctgaagtaa caggattagg tcctgacatc
241 atacaagcta actccatgta ctctttctat ggtgatgatg agattgtgag cacagacata
301 aaattggacc cagagaaatt gaccgcaaag ctcaaagaat atggccttaa acccactcgg
361 cccgacaaaa ctgaggggcc gttggtggtt agtgaggacc tgaatgggtt gactttcctc
421 cgccgaacag tcacccgtga tccagcaggt tggtttggaa agttggacca aaactccatc
481 ctcaggcagt tgtactggac aagaggaccc aaccatgaag accccagtga gaccatgata
541 ccacacgcac aaagacctgt gcagctcatg gcactactag gagaatcctc cctacatgga
601 ccctcatttt acagcaaggt tagcaaatta gtcatatctg aacttaaaga gggaggaatg
661 gatttttatg tgcccagaca agagtcaatg ttcagatgga tgaggttctc agatctaagc
721 acatgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgaatga
781 cgccgctcca tctaatgatg gtgctgctgg tctcgtacca gagggcaaca acgagaccct
841 tcccctagaa ccagttgcgg gcgcagctat agccgcaccc gtcactggcc aaaataacat
901 aattgacccc tggattagaa caaattttgt gcaagcacca aatggagagt ttacagtgtc
961 acccagaaac tctcctggag aaattttatt aaacttagag ttgggccctg atttgaaccc
1021 ttatttggct catttgtcaa ggatgtacaa tgggtatgct ggtggagtgg aagttcaggt
1081 tctcctggca gggaacgcgt tcactgccgg aaagatcctc ttcgccgccg tcccgccaaa
1141 tttcccagtg gaattcttaa gcccagccca gatcacaatg ctcccacatt taatagtaga
1201 tgttaggact cttgaaccaa ttatgatccc actccctgat gttaggaata cattcttcca
1261 ttatagtaac cagcctaaca gccgcatgag attagtggct atgctctaca ccccactcag
1321 atctaatggc tcaggtgatg atgtctttac tgtctcttgc agggttttga ctaggcctac
1381 tcctgatttt gagttcactt atttagtgcc accttctgtt gaatctaaaa ctaagccttt
1441 ttccttacct attttaaccc tttctgagct cacaaattcg aggttcccag tccccatcga
1501 ttcgcttttc accgcccaga ataatgtgtt gcaggtgcag tgtcaaaatg gcaggtgtac
1561 acttgatggt gagttacaag gcacaaccca gttgctccca tctggcatct gtgcattcag
1621 aggacgggtg acagcacaaa ttaaccaacg tgacaggtgg cacatgcaac tgcaaaacct
1681 caatggtaca acatatgacc caactgatga tgtgccagcc ccgctgggta cacctgactt
1741 caagggcgtc gtatttggga tggtaagcca aagaaatgtg ggtaatgatg cgcctggctc
1801 aaccagagcc caacaggcgt gggtttcaac ctatagcccc caatttgtcc ccaaattagg
1861 ttctgtcaat cttagaatta gtgataatga tgatttccaa ttccacccga caaaattcac
1921 accagtgggc gtcaatgatg acaatgatgg ccccccgttc agacaatggg aactaccaaa
1981 ctattcaggg gagcttacct tgaatatgaa tcttgccccc ccagttgctc caaattttcc
2041 tggtgaacaa ttgttattct tcagatcttt cgtgccatgc tcaggaggtt acaaccaagg
2101 tattatagat tgtcttattc cccaagaatg gatccaacat ttctatcagg aatcagcacc
2161 ctcccagtca gacgtggccc taatcaggta tgtcaacccc gacacgggac gcacactgtt
2221 tgaagcaaaa ttgcacagat ctggttacat tactgtggct cactctggag actatcctct
2281 tgttgttccg gctaatggac actttagatt tgattcttgg gttaatcagt tttactcact
2341 cgccccaatg ggaactggga atgggcgaag gagggctcag taatggctgg ggctttcatt
2401 gcaggattgg caggcgacat gctcacgtca tctgtgggct cccttgtgaa cgcaggggca
2461 aacgccatca accaaaagat agactttgaa aacaacaaac aactccagtc tgcttccttt
2521 cagcatgata aagagatgct ccaagcgcag gtgagggcaa ccaagcagct gcaatctgaa
2581 atgatagccc taaaacaggg ggttttggcc gcaggcggct tttcccccac tgatgcagca
2641 aggggatcca ttggtgcacc catgacaaag gtgcttgact ggtctggcac tcgatactgg
2701 gcgcccaatt ccacaaggac aactggctat tcgggacaat tcacctcttc acctgtgcat
2761 atgtctagcc caaatgctcc acaatcaaaa cctgcaaagc ctaggtctct agctccttcc
2821 tcttcttcta gcagtgtcta tagtatgtat actcaatcta ctcatttaac atctggctct
2881 tctagtaatg cttcttctgc ctccacaaaa tcgacaaatt taagctctgg ctcctctcaa
2941 aacagaacag cagagtgggt aaatcaacag agaagtctta gccctttcat gagtggcgca
3001 cttaacatct cacatgtcac gccaccttca agtagggctt ccagttatgg gacggtctcg
3061 accgtgccca aggaagtttt ggactcctgg acgtctgcgt ttaacacaca cagacagccg
3121 ctcttcgcac acctcagagt gaggggggag tcacgtgttt agtgaaaaga aataattggc
3181 tataatgtga tttctttcta aatttggcta atttgtatct tttaaaaaaa aaaaaaaaa
//