Typing tool
|
Complete norovirus genomes
KX024652 | GII.17 | ||
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GII.P17 |
ORF1: 1..780 ORF2: 761..2383 ORF3: 2383..3162LOCUS KX024652 3239 bp RNA linear VRL 28-MAY-2016 DEFINITION Norovirus GII.17 strain Hu/GII.17/HUN5737/2015/HUN nonstructural polyprotein (ORF1) gene, partial cds; and capsid protein VP1 (VP1) and capsid protein VP2 (VP2) genes, complete cds. ACCESSION KX024652 VERSION KX024652.1 KEYWORDS . SOURCE Norovirus GII.17 ORGANISM Norovirus GII.17 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3239) AUTHORS Reuter,G. and Pankovics,P. TITLE Norovirus GII.17-2014 (Kawasaki) pandemic and the epidemiological situation in Hungary JOURNAL Epinfo 23 (2), 13-19 (2016) REFERENCE 2 (bases 1 to 3239) AUTHORS Reuter,G. and Pankovics,P. TITLE Direct Submission JOURNAL Submitted (05-APR-2016) Regional Laboratory of Virology, ANTSZ Baranya County Institute of State Public Health Service, Szabadsag u. 7., Pecs, Baranya H-7623, Hungary COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3239 /organism="Norovirus GII.17" /mol_type="genomic RNA" /strain="Hu/GII.17/HUN5737/2015/HUN" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:552592" /country="Hungary" /collection_date="19-Oct-2015" /note="genotype: GII.17" gene <1..780 /gene="ORF1" CDS <1..780 /gene="ORF1" /note="RdRp" /codon_start=1 /product="nonstructural polyprotein" /protein_id="ANG57126.1" /translation="RAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAIN EGLPSGVPCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKL DPEKLTAKLKEYGLKPTRPDKTEGPLVVSEDLNGLTFLRRTVTRDPAGWFGKLDQNSI LRQLYWTRGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEG GMDFYVPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 761..2383 /gene="VP1" CDS 761..2383 /gene="VP1" /note="ORF2" /codon_start=1 /product="capsid protein VP1" /protein_id="ANG57127.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFHPTKFTPVGVN DDNDGPPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 2383..3162 /gene="VP2" CDS 2383..3162 /gene="VP2" /note="ORF3" /codon_start=1 /product="capsid protein VP2" /protein_id="ANG57128.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTRTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST HLTSGSSSNASSASTKSTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSYGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 cgggcagtgc tggaagcggc acttgaaatc atggtgagat tttctgctga gccacagctg 61 gcacaaatag tggcagagga cctgctgtca ccaagtgtgg ttgatgtggg cgatttcaaa 121 atcgctatca atgaaggcct accatctggc gtgccttgca cctcacaatg gaattctatt 181 gcccactggt tacttacctt gtgtgccctt tctgaagtaa caggattagg tcctgacatc 241 atacaagcta actccatgta ctctttctat ggtgatgatg agattgtgag cacagacata 301 aaattggacc cagagaaatt gaccgcaaag ctcaaagaat atggccttaa acccactcgg 361 cccgacaaaa ctgaggggcc gttggtggtt agtgaggacc tgaatgggtt gactttcctc 421 cgccgaacag tcacccgtga tccagcaggt tggtttggaa agttggacca aaactccatc 481 ctcaggcagt tgtactggac aagaggaccc aaccatgaag accccagtga gaccatgata 541 ccacacgcac aaagacctgt gcagctcatg gcactactag gagaatcctc cctacatgga 601 ccctcatttt acagcaaggt tagcaaatta gtcatatctg aacttaaaga gggaggaatg 661 gatttttatg tgcccagaca agagtcaatg ttcagatgga tgaggttctc agatctaagc 721 acatgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgaatga 781 cgccgctcca tctaatgatg gtgctgctgg tctcgtacca gagggcaaca acgagaccct 841 tcccctagaa ccagttgcgg gcgcagctat agccgcaccc gtcactggcc aaaataacat 901 aattgacccc tggattagaa caaattttgt gcaagcacca aatggagagt ttacagtgtc 961 acccagaaac tctcctggag aaattttatt aaacttagag ttgggccctg atttgaaccc 1021 ttatttggct catttgtcaa ggatgtacaa tgggtatgct ggtggagtgg aagttcaggt 1081 tctcctggca gggaacgcgt tcactgccgg aaagatcctc ttcgccgccg tcccgccaaa 1141 tttcccagtg gaattcttaa gcccagccca gatcacaatg ctcccacatt taatagtaga 1201 tgttaggact cttgaaccaa ttatgatccc actccctgat gttaggaata cattcttcca 1261 ttatagtaac cagcctaaca gccgcatgag attagtggct atgctctaca ccccactcag 1321 atctaatggc tcaggtgatg atgtctttac tgtctcttgc agggttttga ctaggcctac 1381 tcctgatttt gagttcactt atttagtgcc accttctgtt gaatctaaaa ctaagccttt 1441 ttccttacct attttaaccc tttctgagct cacaaattcg aggttcccag tccccatcga 1501 ttcgcttttc accgcccaga ataatgtgtt gcaggtgcag tgtcaaaatg gcaggtgtac 1561 acttgatggt gagttacaag gcacaaccca gttgctccca tctggcatct gtgcattcag 1621 aggacgggtg acagcacaaa ttaaccaacg tgacaggtgg cacatgcaac tgcaaaacct 1681 caatggtaca acatatgacc caactgatga tgtgccagcc ccgctgggta cacctgactt 1741 caagggcgtc gtatttggga tggtaagcca aagaaatgtg ggtaatgatg cgcctggctc 1801 aaccagagcc caacaggcgt gggtttcaac ctatagcccc caatttgtcc ccaaattagg 1861 ttctgtcaat cttagaatta gtgataatga tgatttccaa ttccacccga caaaattcac 1921 accagtgggc gtcaatgatg acaatgatgg ccccccgttc agacaatggg aactaccaaa 1981 ctattcaggg gagcttacct tgaatatgaa tcttgccccc ccagttgctc caaattttcc 2041 tggtgaacaa ttgttattct tcagatcttt cgtgccatgc tcaggaggtt acaaccaagg 2101 tattatagat tgtcttattc cccaagaatg gatccaacat ttctatcagg aatcagcacc 2161 ctcccagtca gacgtggccc taatcaggta tgtcaacccc gacacgggac gcacactgtt 2221 tgaagcaaaa ttgcacagat ctggttacat tactgtggct cactctggag actatcctct 2281 tgttgttccg gctaatggac actttagatt tgattcttgg gttaatcagt tttactcact 2341 cgccccaatg ggaactggga atgggcgaag gagggctcag taatggctgg ggctttcatt 2401 gcaggattgg caggcgacat gctcacgtca tctgtgggct cccttgtgaa cgcaggggca 2461 aacgccatca accaaaagat agactttgaa aacaacaaac aactccagtc tgcttccttt 2521 cagcatgata aagagatgct ccaagcgcag gtgagggcaa ccaagcagct gcaatctgaa 2581 atgatagccc taaaacaggg ggttttggcc gcaggcggct tttcccccac tgatgcagca 2641 aggggatcca ttggtgcacc catgacaaag gtgcttgact ggtctggcac tcgatactgg 2701 gcgcccaatt ccacaaggac aactggctat tcgggacaat tcacctcttc acctgtgcat 2761 atgtctagcc caaatgctcc acaatcaaaa cctgcaaagc ctaggtctct agctccttcc 2821 tcttcttcta gcagtgtcta tagtatgtat actcaatcta ctcatttaac atctggctct 2881 tctagtaatg cttcttctgc ctccacaaaa tcgacaaatt taagctctgg ctcctctcaa 2941 aacagaacag cagagtgggt aaatcaacag agaagtctta gccctttcat gagtggcgca 3001 cttaacatct cacatgtcac gccaccttca agtagggctt ccagttatgg gacggtctcg 3061 accgtgccca aggaagtttt ggactcctgg acgtctgcgt ttaacacaca cagacagccg 3121 ctcttcgcac acctcagagt gaggggggag tcacgtgttt agtgaaaaga aataattggc 3181 tataatgtga tttctttcta aatttggcta atttgtatct tttaaaaaaa aaaaaaaaa //