Typing tool
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Complete norovirus genomes
KU954111 | GI.2 | ||
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GI.P2 |
ORF1: 1..1584 ORF2: 1568..3208 ORF3: 3208..3541LOCUS KU954111 3541 bp RNA linear VRL 03-APR-2017 DEFINITION Norwalk virus isolate Hu/GI.2/Taichung/16-P-2/2016/TW ORF1 gene, partial cds; VP1 gene, complete cds; and VP2 gene, partial cds. ACCESSION KU954111 VERSION KU954111.1 KEYWORDS . SOURCE Norwalk virus ORGANISM Norwalk virus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus. REFERENCE 1 (bases 1 to 3541) AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Liao,W.-T. TITLE Direct Submission JOURNAL Submitted (21-MAR-2016) Centers for Disease Control Department of Health Taiwain, R.O.C., Center for Research and Diagnostics, No. 161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C. FEATURES Location/Qualifiers source 1..3541 /organism="Norwalk virus" /mol_type="genomic RNA" /isolate="Hu/GI.2/Taichung/16-P-2/2016/TW" /isolation_source="stool specimen" /host="Homo sapiens; 45-year male with diarrhea" /db_xref="taxon:11983" /country="Taiwan" /collection_date="Jan-2016" CDS <1..1584 /note="nonstructural protein" /codon_start=1 /product="ORF1" /protein_id="ARC53066.1" /translation="SGNTVVCAVQASEGETTLEGGDKGHYAGHEIIKHGCGPALSTKT KFWKSSPEPLPPGVYEPAYLGGRDPRVTGGPSLQQVLRDQLKPFAEPRGRMPEPGLLE AAVETVTSSLEQVMDTPVPWSYSDACQSLDKTTSSGFPYHRRKNDDWNGTTFIRELGE QAAHANNMYEQAKSMKPMYTAALKDELVKPEKVYQKVKKRLLWGADLGTVVRAARAFG PFCDAIKSHTIKLPIKVGMNSIEDGPLIYAEHSKYKYHFDADYTAWDSTQNRQIMTES FSIMCRLTASPELASVVAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLI TLCALSEVTGLSPDVIQSMSYFSFYGDDEIVSTDIEFDPAKLTQVLREYGLKPTRPDK SEGPIIVRKSVDGLVFLRRTISRDAAGFQGRLDRASIERQIYWTRGPNHSDPFETLVP HQQRKVQLISLLGEASLHGEKFYRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDL GLWTGDRNLLPEFVNDDGV" CDS 1568..3208 /note="major structural protein" /codon_start=1 /product="VP1" /protein_id="ARC53068.1" /translation="MMMASKDAPQSADGASGAGQLVPEVNTADPLPMEPVAGPTTAVA TAGQVNMIDPWIVNNFVQSPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLSQMYNG WVGNMRVRILLAGNAFSAGKIIVCCVPPGFTSSSLTIAQATLFPHVIADVRTLEPIEM PLEDVRNVLYHTNDNQPTMRLVCMLYTPLRTGGGSGSSDSFVVAGRVLTAPSSDFSFL FLVPPTIEQKTRAFTVPNIPLQTLSNSRFPSLIQGMILSPDASQVVQFQNGRCLIDGQ LLGTTPATSGQLFRVRGKINQGARTLNLTEVDGKPFMAFDSPAPVGFPDFGKCDWHMR ISKTPNNTSSGDPMRSVSVQTNVQGFVPHLGSIQFDEVFNHPTGDYIGTIEWISQPST PPGTDINLWEIPDYGSSLSQAANLAPPVFPPGFGEALVYFVSAFPGPNNRSAPNDVPC LLPQEYITHFVSEQAPTMGDAALLHYVDPDTNRNLGEFKLYPGGYLTCVPNGVGAGPQ QLPLNGVFLFVSWVSRFYQLKPVGTASTARGRLGVRRI" CDS 3208..>3541 /note="minor structural protein" /codon_start=1 /product="VP2" /protein_id="ARC53067.1" /translation="MAQAIIGAIAASAAGSALGAGIRAGAEAALQSQRYQQDLALQRN TFEHDKDMLSYQVQASNALLAKNLNTRYSMLVAGGLSSADASRAVAGAPVTQLIDWNG TRVAAPRSS" ORIGIN 1 tcaggcaaca ccgttgtgtg cgccgttcag gccagtgaag gagaaaccac gcttgaaggc 61 ggtgacaaag gtcactatgc tggacatgaa ataattaagc atggttgtgg accagccctg 121 tcaaccaaaa ccaaattctg gaaatcatcc cccgaaccac taccccctgg ggtctatgaa 181 cccgcctacc tcgggggccg ggaccctagg gtaactggcg gtccctcact ccaacaggtg 241 ttgcgggacc aattaaagcc atttgctgag ccacgaggac gcatgccaga gccaggtctc 301 ttggaggccg cagttgagac tgtgacttca tcattagagc aggttatgga cactcccgtt 361 ccttggagct atagtgatgc gtgccagtcc cttgataaga ccactagttc tggttttccc 421 taccacagaa ggaagaatga cgactggaat ggcaccacct ttatcaggga gttaggggag 481 caggcagcac acgctaataa catgtatgaa caggctaaaa gtatgaaacc catgtacacg 541 gcagcgctta aagatgaact agtcaaacca gagaaggtat accaaaaagt gaagaagcgc 601 ttgttatggg gggcagactt gggcacggtg gttcgggccg cgcgggcttt tggtccattc 661 tgtgatgcta taaaatccca cacaatcaaa ttgcccatta aagttggaat gaattcaatt 721 gaggatgggc cactgatcta tgcagaacat tcaaagtata agtaccattt tgatgcagat 781 tacacagctt gggattcaac tcaaaataga caaatcatga cagagtcatt ctcaatcatg 841 tgtcggctaa ctgcatcacc tgaactagct tcagtggtgg ctcaagattt gcttgcaccc 901 tcagagatgg atgttggcga ctatgtcata agagtgaagg aaggcctccc atctggtttt 961 ccatgtacat cacaggttaa tagtataaac cattggttaa taactctgtg tgccctttct 1021 gaagtaactg gtctgtcgcc agatgtcatc cagtccatgt catatttctc tttctatggt 1081 gatgatgaaa tagtgtcaac tgacatagaa tttgatccag caaaactgac acaagtcctc 1141 agagagtatg gacttaaacc cacccgcccc gacaaaagcg agggcccaat aattgtgagg 1201 aagagtgtgg atggtttggt ctttttgcgt cgcactatct cccgcgacgc cgcaggattc 1261 caggggcgac tggaccgggc atccattgaa agacaaatct actggactag aggacccaac 1321 cattcagacc cttttgagac cctggtgcca caccaacaaa ggaaagtcca actaatatca 1381 ttattgggtg aggcctcact gcatggtgaa aagttttaca ggaagatttc aagtaaagtc 1441 atccaggaaa ttaaaacagg gggccttgaa atgtatgtgc caggatggca agccatgttc 1501 cgttggatgc ggttccatga ccttggtttg tggacaggag atcgcaatct cctgcccgaa 1561 tttgtaaatg atgatggcgt ctaaggacgc ccctcaaagc gctgatggcg caagcggcgc 1621 aggtcaactg gtgccggagg ttaatacagc tgacccctta cccatggaac ctgtggctgg 1681 gccaacaaca gccgtagcca ctgctgggca agttaatatg attgatccct ggattgttaa 1741 taattttgtc cagtcacctc aaggtgagtt tacaatctct cctaacaata cccccggtga 1801 tattttgttt gatttacaat taggtccaca tctaaaccct ttcttgtcac atttgtccca 1861 aatgtataat ggctgggttg ggaacatgag agtcagaatt ctccttgccg ggaatgcatt 1921 ctcagctgga aagattatag tttgttgtgt cccccctggc tttacatctt cttctctcac 1981 tatagctcag gctacattgt ttccccatgt aattgctgat gtgagaaccc ttgagccaat 2041 agaaatgccc ctcgaggatg tacgcaatgt cctctatcac accaatgata atcaaccaac 2101 aatgcggctg gtgtgtatgc tatacacgcc gctccgcact ggtggggggt ctggtagttc 2161 tgattccttt gtagttgctg gcagggttct cacagcccct agtagcgact tcagtttctt 2221 gttccttgtc ccgcctacca tagagcagaa gactcgggct ttcactgtgc ctaatatccc 2281 cttgcaaacc ttgtccaatt ctaggtttcc ttccctcatc caggggatga ttctgtcccc 2341 cgatgcatct caagtggtcc aattccaaaa tgggcgttgc cttatagatg gtcaactctt 2401 aggcactaca cccgctacat caggacagct gttcagagta agaggaaaga taaatcaggg 2461 agcccgcaca cttaacctca cagaggtgga tggtaaacca ttcatggcat ttgattcccc 2521 tgcacctgtg gggttccccg attttggaaa atgtgactgg cacatgagaa ttagtaaaac 2581 cccaaacaac acaagttcag gtgaccccat gcgcagcgtc agcgtgcaaa ccaatgtgca 2641 gggttttgtg ccacacctgg gaagtataca atttgatgaa gtgtttaatc atcctacagg 2701 tgactacatt ggcaccattg aatggatttc ccagccatct acaccccctg gaacagatat 2761 taatctgtgg gagatccccg attatggatc atccctttcc caagcagcta atctggcccc 2821 cccagtattc ccccctggat ttggtgaggc ccttgtatac tttgtttctg ctttcccggg 2881 ccccaataac cgctcagccc cgaatgatgt accctgtctt ctccctcaag agtacataac 2941 ccactttgtc agtgaacaag ccccaacgat gggtgacgca gctttactgc attatgtcga 3001 ccctgatacc aacaggaacc ttggggagtt caagctatac cctggaggtt acctcacctg 3061 tgtaccaaac ggggtaggtg ccgggcctca acagctccct ctcaatggtg tttttctctt 3121 tgtttcttgg gtgtctcgtt tttaccagct taagcctgtg ggaacagcca gtacggcaag 3181 aggtaggctt ggagtacgcc gtatataatg gcccaagcca tcataggagc aattgccgcg 3241 tcagctgcag gctcagcatt gggtgcgggc atccgggctg gtgccgaggc tgcgcttcag 3301 agtcaaagat accaacaaga cttagccctg caaaggaata cttttgaaca tgataaggat 3361 atgctttcct accaggtcca ggcaagtaat gcacttttgg caaagaatct caatacccgc 3421 tattctatgc ttgttgcagg gggtctttct agtgctgatg cttctcgggc tgttgctggg 3481 gcccctgtaa cacaattgat tgattggaac ggcactcggg ttgccgcccc caggtcaagt 3541 g //