Typing tool
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Typing tool
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Complete norovirus genomes
| KU954111 | GI.2 | |
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| GI.P2 |
ORF1: 1..1584
ORF2: 1568..3208
ORF3: 3208..3541
LOCUS KU954111 3541 bp RNA linear VRL 03-APR-2017
DEFINITION Norwalk virus isolate Hu/GI.2/Taichung/16-P-2/2016/TW ORF1 gene,
partial cds; VP1 gene, complete cds; and VP2 gene, partial cds.
ACCESSION KU954111
VERSION KU954111.1
KEYWORDS .
SOURCE Norwalk virus
ORGANISM Norwalk virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3541)
AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Liao,W.-T.
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2016) Centers for Disease Control Department of
Health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..3541
/organism="Norwalk virus"
/mol_type="genomic RNA"
/isolate="Hu/GI.2/Taichung/16-P-2/2016/TW"
/isolation_source="stool specimen"
/host="Homo sapiens; 45-year male with diarrhea"
/db_xref="taxon:11983"
/geo_loc_name="Taiwan"
/collection_date="Jan-2016"
CDS <1..1584
/note="nonstructural protein"
/codon_start=1
/product="ORF1"
/protein_id="ARC53066.1"
/translation="SGNTVVCAVQASEGETTLEGGDKGHYAGHEIIKHGCGPALSTKT
KFWKSSPEPLPPGVYEPAYLGGRDPRVTGGPSLQQVLRDQLKPFAEPRGRMPEPGLLE
AAVETVTSSLEQVMDTPVPWSYSDACQSLDKTTSSGFPYHRRKNDDWNGTTFIRELGE
QAAHANNMYEQAKSMKPMYTAALKDELVKPEKVYQKVKKRLLWGADLGTVVRAARAFG
PFCDAIKSHTIKLPIKVGMNSIEDGPLIYAEHSKYKYHFDADYTAWDSTQNRQIMTES
FSIMCRLTASPELASVVAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLI
TLCALSEVTGLSPDVIQSMSYFSFYGDDEIVSTDIEFDPAKLTQVLREYGLKPTRPDK
SEGPIIVRKSVDGLVFLRRTISRDAAGFQGRLDRASIERQIYWTRGPNHSDPFETLVP
HQQRKVQLISLLGEASLHGEKFYRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDL
GLWTGDRNLLPEFVNDDGV"
CDS 1568..3208
/note="major structural protein"
/codon_start=1
/product="VP1"
/protein_id="ARC53068.1"
/translation="MMMASKDAPQSADGASGAGQLVPEVNTADPLPMEPVAGPTTAVA
TAGQVNMIDPWIVNNFVQSPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLSQMYNG
WVGNMRVRILLAGNAFSAGKIIVCCVPPGFTSSSLTIAQATLFPHVIADVRTLEPIEM
PLEDVRNVLYHTNDNQPTMRLVCMLYTPLRTGGGSGSSDSFVVAGRVLTAPSSDFSFL
FLVPPTIEQKTRAFTVPNIPLQTLSNSRFPSLIQGMILSPDASQVVQFQNGRCLIDGQ
LLGTTPATSGQLFRVRGKINQGARTLNLTEVDGKPFMAFDSPAPVGFPDFGKCDWHMR
ISKTPNNTSSGDPMRSVSVQTNVQGFVPHLGSIQFDEVFNHPTGDYIGTIEWISQPST
PPGTDINLWEIPDYGSSLSQAANLAPPVFPPGFGEALVYFVSAFPGPNNRSAPNDVPC
LLPQEYITHFVSEQAPTMGDAALLHYVDPDTNRNLGEFKLYPGGYLTCVPNGVGAGPQ
QLPLNGVFLFVSWVSRFYQLKPVGTASTARGRLGVRRI"
CDS 3208..>3541
/note="minor structural protein"
/codon_start=1
/product="VP2"
/protein_id="ARC53067.1"
/translation="MAQAIIGAIAASAAGSALGAGIRAGAEAALQSQRYQQDLALQRN
TFEHDKDMLSYQVQASNALLAKNLNTRYSMLVAGGLSSADASRAVAGAPVTQLIDWNG
TRVAAPRSS"
ORIGIN
1 tcaggcaaca ccgttgtgtg cgccgttcag gccagtgaag gagaaaccac gcttgaaggc
61 ggtgacaaag gtcactatgc tggacatgaa ataattaagc atggttgtgg accagccctg
121 tcaaccaaaa ccaaattctg gaaatcatcc cccgaaccac taccccctgg ggtctatgaa
181 cccgcctacc tcgggggccg ggaccctagg gtaactggcg gtccctcact ccaacaggtg
241 ttgcgggacc aattaaagcc atttgctgag ccacgaggac gcatgccaga gccaggtctc
301 ttggaggccg cagttgagac tgtgacttca tcattagagc aggttatgga cactcccgtt
361 ccttggagct atagtgatgc gtgccagtcc cttgataaga ccactagttc tggttttccc
421 taccacagaa ggaagaatga cgactggaat ggcaccacct ttatcaggga gttaggggag
481 caggcagcac acgctaataa catgtatgaa caggctaaaa gtatgaaacc catgtacacg
541 gcagcgctta aagatgaact agtcaaacca gagaaggtat accaaaaagt gaagaagcgc
601 ttgttatggg gggcagactt gggcacggtg gttcgggccg cgcgggcttt tggtccattc
661 tgtgatgcta taaaatccca cacaatcaaa ttgcccatta aagttggaat gaattcaatt
721 gaggatgggc cactgatcta tgcagaacat tcaaagtata agtaccattt tgatgcagat
781 tacacagctt gggattcaac tcaaaataga caaatcatga cagagtcatt ctcaatcatg
841 tgtcggctaa ctgcatcacc tgaactagct tcagtggtgg ctcaagattt gcttgcaccc
901 tcagagatgg atgttggcga ctatgtcata agagtgaagg aaggcctccc atctggtttt
961 ccatgtacat cacaggttaa tagtataaac cattggttaa taactctgtg tgccctttct
1021 gaagtaactg gtctgtcgcc agatgtcatc cagtccatgt catatttctc tttctatggt
1081 gatgatgaaa tagtgtcaac tgacatagaa tttgatccag caaaactgac acaagtcctc
1141 agagagtatg gacttaaacc cacccgcccc gacaaaagcg agggcccaat aattgtgagg
1201 aagagtgtgg atggtttggt ctttttgcgt cgcactatct cccgcgacgc cgcaggattc
1261 caggggcgac tggaccgggc atccattgaa agacaaatct actggactag aggacccaac
1321 cattcagacc cttttgagac cctggtgcca caccaacaaa ggaaagtcca actaatatca
1381 ttattgggtg aggcctcact gcatggtgaa aagttttaca ggaagatttc aagtaaagtc
1441 atccaggaaa ttaaaacagg gggccttgaa atgtatgtgc caggatggca agccatgttc
1501 cgttggatgc ggttccatga ccttggtttg tggacaggag atcgcaatct cctgcccgaa
1561 tttgtaaatg atgatggcgt ctaaggacgc ccctcaaagc gctgatggcg caagcggcgc
1621 aggtcaactg gtgccggagg ttaatacagc tgacccctta cccatggaac ctgtggctgg
1681 gccaacaaca gccgtagcca ctgctgggca agttaatatg attgatccct ggattgttaa
1741 taattttgtc cagtcacctc aaggtgagtt tacaatctct cctaacaata cccccggtga
1801 tattttgttt gatttacaat taggtccaca tctaaaccct ttcttgtcac atttgtccca
1861 aatgtataat ggctgggttg ggaacatgag agtcagaatt ctccttgccg ggaatgcatt
1921 ctcagctgga aagattatag tttgttgtgt cccccctggc tttacatctt cttctctcac
1981 tatagctcag gctacattgt ttccccatgt aattgctgat gtgagaaccc ttgagccaat
2041 agaaatgccc ctcgaggatg tacgcaatgt cctctatcac accaatgata atcaaccaac
2101 aatgcggctg gtgtgtatgc tatacacgcc gctccgcact ggtggggggt ctggtagttc
2161 tgattccttt gtagttgctg gcagggttct cacagcccct agtagcgact tcagtttctt
2221 gttccttgtc ccgcctacca tagagcagaa gactcgggct ttcactgtgc ctaatatccc
2281 cttgcaaacc ttgtccaatt ctaggtttcc ttccctcatc caggggatga ttctgtcccc
2341 cgatgcatct caagtggtcc aattccaaaa tgggcgttgc cttatagatg gtcaactctt
2401 aggcactaca cccgctacat caggacagct gttcagagta agaggaaaga taaatcaggg
2461 agcccgcaca cttaacctca cagaggtgga tggtaaacca ttcatggcat ttgattcccc
2521 tgcacctgtg gggttccccg attttggaaa atgtgactgg cacatgagaa ttagtaaaac
2581 cccaaacaac acaagttcag gtgaccccat gcgcagcgtc agcgtgcaaa ccaatgtgca
2641 gggttttgtg ccacacctgg gaagtataca atttgatgaa gtgtttaatc atcctacagg
2701 tgactacatt ggcaccattg aatggatttc ccagccatct acaccccctg gaacagatat
2761 taatctgtgg gagatccccg attatggatc atccctttcc caagcagcta atctggcccc
2821 cccagtattc ccccctggat ttggtgaggc ccttgtatac tttgtttctg ctttcccggg
2881 ccccaataac cgctcagccc cgaatgatgt accctgtctt ctccctcaag agtacataac
2941 ccactttgtc agtgaacaag ccccaacgat gggtgacgca gctttactgc attatgtcga
3001 ccctgatacc aacaggaacc ttggggagtt caagctatac cctggaggtt acctcacctg
3061 tgtaccaaac ggggtaggtg ccgggcctca acagctccct ctcaatggtg tttttctctt
3121 tgtttcttgg gtgtctcgtt tttaccagct taagcctgtg ggaacagcca gtacggcaag
3181 aggtaggctt ggagtacgcc gtatataatg gcccaagcca tcataggagc aattgccgcg
3241 tcagctgcag gctcagcatt gggtgcgggc atccgggctg gtgccgaggc tgcgcttcag
3301 agtcaaagat accaacaaga cttagccctg caaaggaata cttttgaaca tgataaggat
3361 atgctttcct accaggtcca ggcaagtaat gcacttttgg caaagaatct caatacccgc
3421 tattctatgc ttgttgcagg gggtctttct agtgctgatg cttctcgggc tgttgctggg
3481 gcccctgtaa cacaattgat tgattggaac ggcactcggg ttgccgcccc caggtcaagt
3541 g
//