Typing tool
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Typing tool
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Complete norovirus genomes
| KU954110 | GI.2 | |
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| GI.P2 |
ORF1: 1..1582
ORF2: 1566..3206
ORF3: 3206..3546
LOCUS KU954110 3546 bp RNA linear VRL 03-APR-2017
DEFINITION Norwalk virus isolate Hu/GI.2/Kaohsiung/16-AF-2/2016/TW ORF1 gene,
partial cds; VP1 gene, complete cds; and VP2 gene, partial cds.
ACCESSION KU954110
VERSION KU954110.1
KEYWORDS .
SOURCE Norwalk virus
ORGANISM Norwalk virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3546)
AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Liao,W.-T.
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2016) Centers for Disease Control Department of
Health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..3546
/organism="Norwalk virus"
/mol_type="genomic RNA"
/isolate="Hu/GI.2/Kaohsiung/16-AF-2/2016/TW"
/isolation_source="stool specimen"
/host="Homo sapiens; 18-year male with diarrhea"
/db_xref="taxon:11983"
/geo_loc_name="Taiwan"
/collection_date="Feb-2016"
CDS <1..1582
/note="nonstructural protein"
/codon_start=2
/product="ORF1"
/protein_id="ARC53063.1"
/translation="GNTVVCAVQASEGETTLEGGDKGHYAGHEIIKHGCGPALSTKTK
FWKSSPEPLPPGVYEPAYLGGRDPRVTGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEA
AVETVTSSLEQVMDTPVPWSYSDACQSLDKTTSSGFPYHRRKNDDWNGTTFIRELGEQ
AAHANNMYEQAKSMKPMYTAALKDELVKPEKVYQKVKKRLLWGADLGTVVRAARAFGP
FCDAIKSHTIKLPIKVGMNSIEDGPLIYAEHSKYKYHFDADYTAWDSTQNRQIMTESF
SIMCRLTASPELASVVAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLIT
LCALSEVTGLSPDVIQSMSYFSFYGDDEIVSTDIEFDPAKLTQVLREYGLKPTRPDKS
EGPIIVRKSVDGLVFLRRTISRDAAGFQGRLDRASIERQIYWTRGPNHSDPFETLVPH
QQRKVQLISLLGEASLHGEKFYRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLG
LWTGDRNLLPEFVNDDGV"
CDS 1566..3206
/note="major structural protein"
/codon_start=1
/product="VP1"
/protein_id="ARC53064.1"
/translation="MMMASKDAPQSADGASGAGQLVPEVNTADPLPMEPVAGPTTAVA
TAGQVNMIDPWIVNNFVQSPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLSQMYNG
WVGNMRVRILLAGNAFSAGKIIVCCVPPGFTSSSLTIAQATLFPHVIADVRTLEPIEM
PLEDVRNVLYHTNDNQPTMRLVCMLYTPLRTGGGSGSSDSFVVAGRVLTAPSSDFSFL
FLVPPTIEQKTRAFTVPNIPLQTLSNSRFPSLIQGMILSPDASQVVQFQNGRCLIDGQ
LLGTTPATSGQLFRVRGKINQGARTLNLTEVDGKPFMAFDSPAPVGFPDFGKCDWHMR
ISKTPNNTSSGDPMRSVSVQTNVQGFVPHLGSIQFDEVFNHPTGDYIGTIEWISQPST
PPGTDINLWEIPDYGSSLSQAANLAPPVFPPGFGEALVYFVSAFPGPNNRSAPNDVPC
LLPQEYITHFVSEQAPTMGDAALLHYVDPDTNRNLGEFKLYPGGYLTCVPNGVGAGPQ
QLPLNGVFLFVSWVSRFYQLKPVGTASTARGRLGVRRI"
CDS 3206..>3546
/note="minor structural protein"
/codon_start=1
/product="VP2"
/protein_id="ARC53065.1"
/translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQSQRYQQDLALQRN
TFEHDKDMLSYQVQASNALLAKNLNTRYSMLVAGGLSSADASRAVAGAPVTQLIDWNG
TRVAAPRSSATT"
ORIGIN
1 aggcaacacc gttgtgtgcg ccgttcaggc cagtgaagga gaaaccacgc ttgaaggcgg
61 tgacaaaggt cactatgctg gacatgaaat aattaagcat ggttgtggac cagccctgtc
121 aaccaaaacc aaattctgga aatcatcccc cgaaccacta ccccctgggg tctatgaacc
181 cgcctacctc gggggccggg accctagggt aactggcggt ccctcactcc aacaggtgtt
241 gcgggaccaa ttaaagccat ttgctgagcc acgaggacgc atgccagagc caggtctctt
301 ggaggccgca gttgagactg tgacttcatc attagagcag gttatggaca ctcccgttcc
361 ttggagctat agtgatgcgt gccagtccct tgataagacc actagttctg gttttcccta
421 ccacagaagg aagaatgacg actggaatgg caccaccttt atcagggagt taggggagca
481 ggcagcacac gctaataaca tgtatgaaca ggctaaaagt atgaaaccca tgtacacggc
541 agcgcttaaa gatgaactag tcaaaccaga gaaggtatac caaaaagtga agaagcgctt
601 gttatggggg gcagacttgg gcacggtggt tcgggccgcg cgggcttttg gtccattctg
661 tgatgctata aaatcccaca caatcaaatt gcccattaaa gttggaatga attcaattga
721 ggatgggcca ctgatctatg cagaacattc aaagtataag taccattttg atgcagatta
781 cacagcttgg gattcaactc aaaatagaca aatcatgaca gagtcattct caatcatgtg
841 tcggctaact gcatcacctg aactagcttc agtggtggct caagatttgc ttgcaccctc
901 agagatggat gttggcgact atgtcataag agtgaaggaa ggcctcccat ctggttttcc
961 atgtacatca caggttaata gtataaacca ttggttaata actctgtgtg ccctttctga
1021 agtaactggt ctgtcgccag atgtcatcca gtccatgtca tatttctctt tctatggtga
1081 tgatgaaata gtgtcaactg acatagaatt tgatccagca aaactgacac aagtcctcag
1141 agagtatgga cttaaaccca cccgccccga caaaagcgag ggcccaataa ttgtgaggaa
1201 gagtgtggat ggtttggtct ttttgcgtcg cactatctcc cgcgacgccg caggattcca
1261 ggggcgactg gaccgggcat ccattgaaag acaaatctac tggactagag gacccaacca
1321 ttcagaccct tttgagaccc tggtgccaca ccaacaaagg aaggtccaac taatatcatt
1381 attgggtgag gcctcactgc atggtgaaaa gttttacagg aagatttcaa gtaaagtcat
1441 ccaggaaatt aaaacagggg gccttgaaat gtatgtgcca ggatggcaag ccatgttccg
1501 ttggatgcgg ttccatgacc ttggtttgtg gacaggagat cgcaatctcc tgcccgaatt
1561 tgtaaatgat gatggcgtct aaggacgccc ctcaaagcgc tgatggcgca agcggcgcag
1621 gtcaactggt gccggaggtt aatacagctg accccttacc catggaacct gtggctgggc
1681 caacaacagc cgtagccact gctgggcaag ttaatatgat tgatccctgg attgttaata
1741 attttgtcca gtcacctcaa ggtgagttca caatctctcc taacaatacc cccggtgata
1801 ttttgtttga tttacaatta ggtccacatc taaacccttt cttgtcacat ttgtcccaaa
1861 tgtataatgg ctgggttggg aacatgagag tcagaattct ccttgctggg aatgcattct
1921 cagctggaaa gattatagtt tgttgtgtcc cccctggctt tacatcttct tctctcacca
1981 tagctcaggc tacattgttt ccccatgtaa ttgctgatgt gagaaccctt gagccaatag
2041 aaatgcccct cgaggatgta cgcaacgtcc tctatcacac caatgataat caaccaacaa
2101 tgcggctggt gtgtatgcta tacacgccgc tccgcactgg tggggggtct ggtagttctg
2161 attcctttgt agttgctggc agggttctca cagcccctag tagcgacttc agtttcttgt
2221 tccttgtccc gcctaccata gaacagaaga ctcgggcttt cactgtgcct aatatcccct
2281 tgcaaacctt gtccaattct aggtttcctt ccctcatcca ggggatgatt ctgtcccccg
2341 atgcatctca agtggtccaa ttccaaaatg ggcgttgcct tatagatggt caactcttag
2401 gcactacacc cgctacatca ggacagctat tcagagtaag aggaaagata aatcagggag
2461 cccgcacact taacctcaca gaggtggatg gtaaaccatt catggcattt gattcccctg
2521 cacctgtggg gttccccgat tttggaaaat gtgattggca catgagaatc agcaaaaccc
2581 caaacaacac aagttcaggt gaccccatgc gcagtgtcag cgtgcaaacc aatgtgcagg
2641 gttttgtgcc acacctggga agtatacaat ttgatgaagt gtttaatcat cccacaggtg
2701 actacattgg caccattgaa tggatttccc agccatccac accccctgga acagatatta
2761 atctgtggga gatccccgat tatggatcat ccctttccca agcagctaat ctggcccccc
2821 cagtattccc ccctggattt ggtgaggccc ttgtatactt tgtttctgct ttcccgggcc
2881 ccaataaccg ctcagccccg aatgatgtac cctgtcttct ccctcaagag tacataaccc
2941 actttgtcag tgaacaagcc ccaacgatgg gtgacgcagc tttactgcat tatgtcgacc
3001 ctgataccaa caggaacctt ggggagttca agctataccc tggaggttac ctcacctgtg
3061 taccaaacgg ggtaggtgcc gggcctcaac agctccctct caatggtgtt tttctctttg
3121 tttcttgggt gtctcgtttt taccagctta agcctgtggg aacagccagt acggcaaggg
3181 gtaggcttgg agtacgccgt atataatggc ccaagccatc atcggagcga ttgccgcgtc
3241 agctgcaggc tcagcattgg gtgcgggcat ccaggctggt gccgaggctg cgcttcagag
3301 tcaaagatac caacaagact tagccctgca aaggaatact tttgaacatg ataaggatat
3361 gctttcctac caggtccagg caagtaatgc acttttggca aagaatctca atacccgcta
3421 ttctatgctt gttgcagggg gtctttctag tgctgatgct tctcgggctg ttgctggggc
3481 ccctgtaaca caattgattg attggaacgg cactcgggtt gccgccccca ggtcaagtgc
3541 aacaac
//