Typing tool
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Complete norovirus genomes
KU954110 | GI.2 | ||
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GI.P2 |
ORF1: 1..1582 ORF2: 1566..3206 ORF3: 3206..3546LOCUS KU954110 3546 bp RNA linear VRL 03-APR-2017 DEFINITION Norwalk virus isolate Hu/GI.2/Kaohsiung/16-AF-2/2016/TW ORF1 gene, partial cds; VP1 gene, complete cds; and VP2 gene, partial cds. ACCESSION KU954110 VERSION KU954110.1 KEYWORDS . SOURCE Norwalk virus ORGANISM Norwalk virus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus. REFERENCE 1 (bases 1 to 3546) AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Liao,W.-T. TITLE Direct Submission JOURNAL Submitted (21-MAR-2016) Centers for Disease Control Department of Health Taiwain, R.O.C., Center for Research and Diagnostics, No. 161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C. FEATURES Location/Qualifiers source 1..3546 /organism="Norwalk virus" /mol_type="genomic RNA" /isolate="Hu/GI.2/Kaohsiung/16-AF-2/2016/TW" /isolation_source="stool specimen" /host="Homo sapiens; 18-year male with diarrhea" /db_xref="taxon:11983" /country="Taiwan" /collection_date="Feb-2016" CDS <1..1582 /note="nonstructural protein" /codon_start=2 /product="ORF1" /protein_id="ARC53063.1" /translation="GNTVVCAVQASEGETTLEGGDKGHYAGHEIIKHGCGPALSTKTK FWKSSPEPLPPGVYEPAYLGGRDPRVTGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEA AVETVTSSLEQVMDTPVPWSYSDACQSLDKTTSSGFPYHRRKNDDWNGTTFIRELGEQ AAHANNMYEQAKSMKPMYTAALKDELVKPEKVYQKVKKRLLWGADLGTVVRAARAFGP FCDAIKSHTIKLPIKVGMNSIEDGPLIYAEHSKYKYHFDADYTAWDSTQNRQIMTESF SIMCRLTASPELASVVAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLIT LCALSEVTGLSPDVIQSMSYFSFYGDDEIVSTDIEFDPAKLTQVLREYGLKPTRPDKS EGPIIVRKSVDGLVFLRRTISRDAAGFQGRLDRASIERQIYWTRGPNHSDPFETLVPH QQRKVQLISLLGEASLHGEKFYRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLG LWTGDRNLLPEFVNDDGV" CDS 1566..3206 /note="major structural protein" /codon_start=1 /product="VP1" /protein_id="ARC53064.1" /translation="MMMASKDAPQSADGASGAGQLVPEVNTADPLPMEPVAGPTTAVA TAGQVNMIDPWIVNNFVQSPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLSQMYNG WVGNMRVRILLAGNAFSAGKIIVCCVPPGFTSSSLTIAQATLFPHVIADVRTLEPIEM PLEDVRNVLYHTNDNQPTMRLVCMLYTPLRTGGGSGSSDSFVVAGRVLTAPSSDFSFL FLVPPTIEQKTRAFTVPNIPLQTLSNSRFPSLIQGMILSPDASQVVQFQNGRCLIDGQ LLGTTPATSGQLFRVRGKINQGARTLNLTEVDGKPFMAFDSPAPVGFPDFGKCDWHMR ISKTPNNTSSGDPMRSVSVQTNVQGFVPHLGSIQFDEVFNHPTGDYIGTIEWISQPST PPGTDINLWEIPDYGSSLSQAANLAPPVFPPGFGEALVYFVSAFPGPNNRSAPNDVPC LLPQEYITHFVSEQAPTMGDAALLHYVDPDTNRNLGEFKLYPGGYLTCVPNGVGAGPQ QLPLNGVFLFVSWVSRFYQLKPVGTASTARGRLGVRRI" CDS 3206..>3546 /note="minor structural protein" /codon_start=1 /product="VP2" /protein_id="ARC53065.1" /translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQSQRYQQDLALQRN TFEHDKDMLSYQVQASNALLAKNLNTRYSMLVAGGLSSADASRAVAGAPVTQLIDWNG TRVAAPRSSATT" ORIGIN 1 aggcaacacc gttgtgtgcg ccgttcaggc cagtgaagga gaaaccacgc ttgaaggcgg 61 tgacaaaggt cactatgctg gacatgaaat aattaagcat ggttgtggac cagccctgtc 121 aaccaaaacc aaattctgga aatcatcccc cgaaccacta ccccctgggg tctatgaacc 181 cgcctacctc gggggccggg accctagggt aactggcggt ccctcactcc aacaggtgtt 241 gcgggaccaa ttaaagccat ttgctgagcc acgaggacgc atgccagagc caggtctctt 301 ggaggccgca gttgagactg tgacttcatc attagagcag gttatggaca ctcccgttcc 361 ttggagctat agtgatgcgt gccagtccct tgataagacc actagttctg gttttcccta 421 ccacagaagg aagaatgacg actggaatgg caccaccttt atcagggagt taggggagca 481 ggcagcacac gctaataaca tgtatgaaca ggctaaaagt atgaaaccca tgtacacggc 541 agcgcttaaa gatgaactag tcaaaccaga gaaggtatac caaaaagtga agaagcgctt 601 gttatggggg gcagacttgg gcacggtggt tcgggccgcg cgggcttttg gtccattctg 661 tgatgctata aaatcccaca caatcaaatt gcccattaaa gttggaatga attcaattga 721 ggatgggcca ctgatctatg cagaacattc aaagtataag taccattttg atgcagatta 781 cacagcttgg gattcaactc aaaatagaca aatcatgaca gagtcattct caatcatgtg 841 tcggctaact gcatcacctg aactagcttc agtggtggct caagatttgc ttgcaccctc 901 agagatggat gttggcgact atgtcataag agtgaaggaa ggcctcccat ctggttttcc 961 atgtacatca caggttaata gtataaacca ttggttaata actctgtgtg ccctttctga 1021 agtaactggt ctgtcgccag atgtcatcca gtccatgtca tatttctctt tctatggtga 1081 tgatgaaata gtgtcaactg acatagaatt tgatccagca aaactgacac aagtcctcag 1141 agagtatgga cttaaaccca cccgccccga caaaagcgag ggcccaataa ttgtgaggaa 1201 gagtgtggat ggtttggtct ttttgcgtcg cactatctcc cgcgacgccg caggattcca 1261 ggggcgactg gaccgggcat ccattgaaag acaaatctac tggactagag gacccaacca 1321 ttcagaccct tttgagaccc tggtgccaca ccaacaaagg aaggtccaac taatatcatt 1381 attgggtgag gcctcactgc atggtgaaaa gttttacagg aagatttcaa gtaaagtcat 1441 ccaggaaatt aaaacagggg gccttgaaat gtatgtgcca ggatggcaag ccatgttccg 1501 ttggatgcgg ttccatgacc ttggtttgtg gacaggagat cgcaatctcc tgcccgaatt 1561 tgtaaatgat gatggcgtct aaggacgccc ctcaaagcgc tgatggcgca agcggcgcag 1621 gtcaactggt gccggaggtt aatacagctg accccttacc catggaacct gtggctgggc 1681 caacaacagc cgtagccact gctgggcaag ttaatatgat tgatccctgg attgttaata 1741 attttgtcca gtcacctcaa ggtgagttca caatctctcc taacaatacc cccggtgata 1801 ttttgtttga tttacaatta ggtccacatc taaacccttt cttgtcacat ttgtcccaaa 1861 tgtataatgg ctgggttggg aacatgagag tcagaattct ccttgctggg aatgcattct 1921 cagctggaaa gattatagtt tgttgtgtcc cccctggctt tacatcttct tctctcacca 1981 tagctcaggc tacattgttt ccccatgtaa ttgctgatgt gagaaccctt gagccaatag 2041 aaatgcccct cgaggatgta cgcaacgtcc tctatcacac caatgataat caaccaacaa 2101 tgcggctggt gtgtatgcta tacacgccgc tccgcactgg tggggggtct ggtagttctg 2161 attcctttgt agttgctggc agggttctca cagcccctag tagcgacttc agtttcttgt 2221 tccttgtccc gcctaccata gaacagaaga ctcgggcttt cactgtgcct aatatcccct 2281 tgcaaacctt gtccaattct aggtttcctt ccctcatcca ggggatgatt ctgtcccccg 2341 atgcatctca agtggtccaa ttccaaaatg ggcgttgcct tatagatggt caactcttag 2401 gcactacacc cgctacatca ggacagctat tcagagtaag aggaaagata aatcagggag 2461 cccgcacact taacctcaca gaggtggatg gtaaaccatt catggcattt gattcccctg 2521 cacctgtggg gttccccgat tttggaaaat gtgattggca catgagaatc agcaaaaccc 2581 caaacaacac aagttcaggt gaccccatgc gcagtgtcag cgtgcaaacc aatgtgcagg 2641 gttttgtgcc acacctggga agtatacaat ttgatgaagt gtttaatcat cccacaggtg 2701 actacattgg caccattgaa tggatttccc agccatccac accccctgga acagatatta 2761 atctgtggga gatccccgat tatggatcat ccctttccca agcagctaat ctggcccccc 2821 cagtattccc ccctggattt ggtgaggccc ttgtatactt tgtttctgct ttcccgggcc 2881 ccaataaccg ctcagccccg aatgatgtac cctgtcttct ccctcaagag tacataaccc 2941 actttgtcag tgaacaagcc ccaacgatgg gtgacgcagc tttactgcat tatgtcgacc 3001 ctgataccaa caggaacctt ggggagttca agctataccc tggaggttac ctcacctgtg 3061 taccaaacgg ggtaggtgcc gggcctcaac agctccctct caatggtgtt tttctctttg 3121 tttcttgggt gtctcgtttt taccagctta agcctgtggg aacagccagt acggcaaggg 3181 gtaggcttgg agtacgccgt atataatggc ccaagccatc atcggagcga ttgccgcgtc 3241 agctgcaggc tcagcattgg gtgcgggcat ccaggctggt gccgaggctg cgcttcagag 3301 tcaaagatac caacaagact tagccctgca aaggaatact tttgaacatg ataaggatat 3361 gctttcctac caggtccagg caagtaatgc acttttggca aagaatctca atacccgcta 3421 ttctatgctt gttgcagggg gtctttctag tgctgatgct tctcgggctg ttgctggggc 3481 ccctgtaaca caattgattg attggaacgg cactcgggtt gccgccccca ggtcaagtgc 3541 aacaac //