Typing tool
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Typing tool
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Complete norovirus genomes
| KU935739 | GII.6 | |
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| GII.P7 |
ORF1: 5..5098
ORF2: 5079..6722
ORF3: 6722..7498
LOCUS KU935739 7581 bp RNA linear VRL 31-OCT-2016
DEFINITION Norovirus GII isolate 0907-26, complete genome.
ACCESSION KU935739
VERSION KU935739.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7581)
AUTHORS Huo,Y.
TITLE Characterization of major capsid protein of a GII.6 norovirus
isolated in China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7581)
AUTHORS Huo,Y.
TITLE Direct Submission
JOURNAL Submitted (16-MAR-2016) Center for Translational Medicine, The
Sixth People's Hospital of Zhengzhou, No. 28 Jingguang Rd,
Zhengzhou, Henan 450000, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7581
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="0907-26"
/isolation_source="feces"
/db_xref="taxon:122929"
/country="China"
/collection_date="07-Sep-2015"
/note="genotype: GII.6"
gene 5..5098
/gene="POL"
CDS 5..5098
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AOY41703.1"
/translation="MKMASNDATTAFGSQNSVNDSINTAPSNKEEVGAFSNIKVGFKK
MLGAVPKGTKAPSSDQHCPSVKIGTKTLTVPPEPPNGEDTVQFDAKSETVRGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFGIFWTPPDVSSFIASLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGTALKS
VKTLEDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDQTSQTANEVGAAL
LRLRQARARYYVSCFQDLVYTLMQVAGASFVVNRISKRFCWERWVKPTETQETSESEK
EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGINELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
gene 5079..6722
/gene="VP1"
CDS 5079..6722
/gene="VP1"
/codon_start=1
/product="capsid protein"
/protein_id="AOY41704.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRARNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGNSIGATRAHEVHIDTTNPRYTPKLGSVLMYSESNDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
gene 6722..7498
/gene="VP2"
CDS 6722..7498
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="AOY41705.1"
/translation="MAGAFLAGLAGDAITNGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSESPKIKVNSDSASVYSSASTAPSQST
HSTALTAGSSSSRTTSSSAVASTLSRTSDWVRGQNERLSPFMDGALHTTFVTPPSSKA
SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQI"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac cactgccttt ggcagccaaa actctgtcaa
61 tgacagtatc aacaccgccc cttctaataa agaagaggtt ggtgcattct ccaacatcaa
121 agttggtttt aagaaaatgc tgggtgccgt tcccaagggg accaaagcac ccagtagtga
181 tcagcactgc ccctcagtta agatcgggac caagacatta acagttcccc ctgagccccc
241 aaatggtgaa gacaccgtgc agtttgatgc gaagtcggaa actgtgcgcg ggttaccaga
301 cttgacaacg gtgcagaatg aacacgaaaa cacaccatac actgtccccc cgttgagtga
361 aagggagcac agaccagcta ctgaaccgct tcctggcaca atactggaga tgtgggatgg
421 tgaattctac cattactctg tgtacgtcag cggtggcaaa gccctagggg ttcacaagcc
481 ccctgcagcg ataagcctcg cgacgataga gctcacaccc atatctcttt attggaggcc
541 cgtttacacc cccaactatc tggtctgccc agacacgttg aagggccttg ctggtgagaa
601 gttcccctac acggccttca gcaacaactg ttacaacttc tgttgctggg tgcttgagct
661 caatgacacg tggcttagca ggagaagcat ctctaggacc accggcttct ttaaaccata
721 ccagtcttgg aataggaaac cccttccaac cgttgatgat ggaaagatca aaaaggtggc
781 caacgcaatt ctctgtgcac ttggatcact gttttcaaaa ccaattaagg acctattggg
841 caaacttaaa ccattgaact tgctgcactt gctcgcatca tgtgactgga cttttgcggg
901 tatagtagag acagtcatcc taatggcgga acttttcggc atcttttgga caccgccaga
961 tgtttccagt ttcatagctt ccctgatagg tgattttgaa ttgcaagggc ctgaggacct
1021 ggctgtggag cttgtacccg tggttatggg tggcatagga atggttctcg gcttcactgc
1081 tgagaagata ggccgcatgc tatcgtccgc tgcatcaaca ctacgggcgt gcaaagactt
1141 ggggaattat gctcttgaca tattgaaact ggttatgaag tggttcttcc caaagaaaga
1201 agagaaagcc gagatggaaa ccctaagggc gattgaggat gccgtcctgg acatggaagc
1261 tataggaaat aaccatctca caaccctcct caaggacaag gatagcctca cggctttcat
1321 gaagacttta gatctagaag aagagaaggc aaggaaactg tccaccaaat catcctcgcc
1381 agacattgtc ggcaccatta atgccatact agctagaata gctgctgcca ggtccctctt
1441 gcacaaggct aaagaagaaa tgttcagcag gatcagaccc gtggttgtca tgatctcggg
1501 tagacctggc attggcaaaa cccacatggc aagacacttg gctaagagta tcgccaacac
1561 catgagcggc gaccagagag tggggctcgt cccacgcaac ggggttgatc attgggacgc
1621 ctacagggga gagagggtgg ttttatggga tgattatggc atgggaaacc ctgtcaaaga
1681 tgccctaaca ctgcaagagc tggccgacac ctgcccagta actctaaact gtgataggat
1741 tgagaacaag gggaagatgt ttgacagtga tgtcatcata atcacgacca atttagtcaa
1801 cccagcgccc ctcgattatg taaacttcga ggcgtgctcc agaagggtcg acttcctggt
1861 ctatgcagag tcaccagaaa ttgagaaggt taagagagac ttccctggcc aacctgacat
1921 gtggaaggac cattttaagc cagacttttc ccacataaaa ctgactctag ccccacaggg
1981 tggatttgac aagaatggca acaccccgca tggtaagggc accatgcgat ccctaaccca
2041 ggggtccctg actgcaaggg ttgcaggtct tgttcatgag aggagagacg agtttcagct
2101 ccaggggaat gaccttcaaa catataactt tgacaccaac agagtctctg catttaggaa
2161 gctggccgca gacaacaagt atgggatcat ggagactatg agagtgggca cagcgcttaa
2221 gagtgtcaag accttggaag atctgaaagt tgcactgagg gatgtgaagt tcaatgagtg
2281 tgagataatt tacagaaact ccaagtaccg agtctcttcc aatggtaaag gttctgtctc
2341 tgttgacaaa gttgaggacc aaacatccca gaccgcaaac gaagtgggtg cagcactcct
2401 tagactcaga caggcaagag ccagatacta tgtcagctgc ttccaagacc tcgtttacac
2461 tctaatgcag gtcgccggag catcattcgt cgtcaacagg atctctaaaa ggttctgctg
2521 ggagagatgg gtcaaaccaa ccgagaccca ggaaacgagt gaatccgaaa aggaagtggc
2581 ccaaggcaga tgggagattg agcccaagga cacagaacca gaaggtaaga agggtaagaa
2641 caagaaggga agaggcaaga aacacacagc tttctccagt aaaggcctga gtgatgagga
2701 gtatgacgag ttcaagagaa tcagagaaga aaggaacgga aaatactcca ttgaggaata
2761 cctgcaagac cgggatcgct actatgagga ggtggcagtc gcccgggcga cagaggagga
2821 cttctgtgaa gaggaggagg ccaagataag acaaagaatc tttcgcccca caaagaagca
2881 gaggaaggaa gaaagggggg tgcttggttt ggttactggc tcagacatca ggaagagaag
2941 accagacgat tttcaaccga agggcaacct gtgggcagac gacaccagga gtgtggacta
3001 caacgagaga cttgatttcg aggctccccc gagtgtctgg tcaagaatag tcccattggg
3061 cactggctgg ggtttctggg tctcatcaaa cctcctgatc acaacaacgc acgtcctacc
3121 taaggggatt aatgaactct ttggagttga gatcaaacag attcagattc ataagtctgg
3181 agagttctgc aggtttagat tcccaagacc aattagacca gatgtcacag ggctcgtgtt
3241 ggaggaaggc gctccagaag gcactgtctg ctccatactc gtaaagagac ctacaggtga
3301 gatgatcccc ctggcagtga ggatgggcac acatgcatcc atgaaaatac agggtaggac
3361 cgtcggtggc cagatgggaa tgctcctcac aggggcaaat gcgaagaaca tggatcttgg
3421 caccggtcct ggtgactgcg gttgccctta catctacaaa cgtggcaatg atatagttgt
3481 cgcgggtgtc cacaccgcag cagcccgggg aggcaacact gtcatatgtg ccactcaagg
3541 gcaagatggg gaagcagtcc ttgagggaaa tgagaacctt ggcacttact gcggtgctcc
3601 aatcttgggt ccaggcaagg cgcccaaact tagcacgaag accaagttct ggcgttcatc
3661 accagacgct ttgccgccag gcacttacga gcctgcctac ttgggaggta aggaccctag
3721 agtggaaaaa ggaccatccc tgcagcaagt catgagggac cagctaaaac ctttcacaga
3781 acccaggggc aagccaccta gacctgcagt cttagaagaa gccaaaaaga cagtgatgaa
3841 tgttctagag caaaccattg accctgctaa accgtggacc tattcccaag catgcgcctc
3901 actggacaag accacttcca gtggcagccc ccatcatgtc aggaaaaatg accattggaa
3961 tggggaatcc ttcactggcc ccctcgcaga ccaagcatcc aaagccaacc tcatgtacga
4021 gcaggccaaa catgtgcagc ccgtgtacac ggccgcactt aaagatgaac tagtcaaaac
4081 tgataagatc tacaagaaga taaagaaaag gctcttgtgg gggtcggatc ttggcacaat
4141 gatcaggtgt gccagggcct ttggcggtct catggatagc atgaaggcaa gctgcatagc
4201 cctcccatgt agggtaggaa tgaacatgaa tgaagatggc cccatcatat ttgacaagca
4261 ttctaagtat aggtaccatt atgatgctga ctattccagg tgggactcaa cccagcaaag
4321 gagcattctc tcggccgcta tggaagtgat ggtgcggttc tctgctgaac cagagctggc
4381 acaagtggtt gcagaggacc tcctggcacc cagccaacta gatgttggcg atttcgtcat
4441 ctcagtccag gagggtctgc catcaggggt cccatgcaca tcacaatgga attcaatagc
4501 acactggatc ctaaccttga gtgcaatggc agaagtgtcg ggtctctcac cagatgttgt
4561 tcaagcccac tcctgtttct cattctacgg tgatgatgag atcgtcagca ctgatatcaa
4621 ccttgatccc atgaagttga cacaaaagct cagagagtat ggcctggtcc ccacccgacc
4681 tgacaaaact gagggtcccc tcgtaataac tgaagatctc accggcctaa cgttcctgcg
4741 taggtcaatt gcacgggacc cagctgggtg gtttggaaaa ttggaccaag actcaatcct
4801 cagacagttg tactggacaa ggggccccaa ccatgagaac ccatatgaga gcatggtccc
4861 tcattcccag cgggccacac aacttatggc ccttctcggt gaggcttcac tacatggtcc
4921 ccagttttac aagaaagtta gcaagatggt tattaatgag atcaaaagtg gtggtctgga
4981 attctatgtg cccagacaag aggccatgtt cagatggatg agattctctg acctcagcac
5041 atgggagggc gatcgcaatc ttgctcccga gggtgtgaat gaagatggcg tcgaatgacg
5101 ctgctccatc gaatgatggt gctgccaacc tcgtaccaga ggccaccaat gaggttatgg
5161 cacttgagcc ggtggtggga gcctcaattg ctgctcctgt cgtcggccaa caaaatataa
5221 ttgacccctg gattagagaa aattttgttc aggcaccaca gggtgagttt actgtttcac
5281 caaggaactc acctggtgag atgcttctaa atcttgaatt aggccctgag ctcaaccctt
5341 atctgagtca tttgtcccgc atgtataacg gctatgctgg tggtatgcag gttcaggtgg
5401 tcctagctgg gaatgcgttc acagctggta aaatcatctt tgccgccgtc ccaccacatt
5461 tccctgttga gaacattagt gcagcccaaa tcacaatgtg cccccatgtg attgttgatg
5521 taagacagct tgagccagtg cttttgcccc ttcctgacat aaggaataga ttctttcatt
5581 ataatcagga aaataccccc cggatgagac ttgtggctat gttgtacaca ccccttagag
5641 caaattctgg tgaggatgtg tttactgtgt cttgcagagt tctgacccgc cctgcccctg
5701 actttgagtt cacgtttttg gtgccaccaa ctgtggagtc aaagactaag ccctttacac
5761 tccctattct gactcttgga gagctgtcca actccagatt ccccgctccg atagacatgt
5821 tgtacactga ccccaatgaa gcaattgtgg tgcaaccaca aaatggcagg tgcacactag
5881 atggaacact tcaggggacc acccaactgg tacccaccca aatttgctcc ttcaggggca
5941 cgctaattag ccagacgtcg aggtctgcag attcaacaga ttcagcccca cgggcgagga
6001 accaccctct ccacgttcag ctgaagaacc tcgatgggac accatatgac ccaacagatg
6061 aggtgccagc agttttaggc gccatagatt tcaaaggaac tgtttttgga gtcgctagcc
6121 aaaggaacac cacagggaac tctataggag caacccgcgc ccatgaagtg cacatagaca
6181 ccacaaaccc tagatacacc ccaaagcttg gctctgtgtt gatgtattct gaatctaatg
6241 attttgatga tggacaaccc acccgcttca cccccatcgg catgggagcc gatgattggc
6301 accaatggga attgcccgaa tattctggtc acctcactct taacatgaat ttggcccccg
6361 cagttgcccc tgctttccct ggtgagcgca ttctcttctt cagatcagtg gtgccgtctg
6421 ctggtggcta tggatcaggt cacatagatt gcctcatccc acaggagtgg gttcagcatt
6481 tctaccagga ggccgcccca tcacagtccg cggtggctct tatcagatat gtcaaccctg
6541 acactggaag aaacatcttt gaggcaaaac tgcatagaga agggttcatc actgtggcaa
6601 attctggaaa caaccccata gttgtgcccc caaatggtta cttcaggttt gaggcctggg
6661 ttaatcaatt ctacacactc acccccatgg gaactggaca ggggcgcaga agagttcaat
6721 aatggcagga gctttcttag ctggattggc aggtgacgcc ataacaaatg gtgtcgggtc
6781 cctaatcaat gctggggcca atgcaattaa ccaaaaggtg gaatatgact tcaataagca
6841 gctccaattg gcatccttca aacatgacaa agagatgttg caatcacaag tactggccac
6901 taaacagctc cagcaggaga tgatgaacat aaggcaaggg gtcttgtccg ctggcggctt
6961 ttcccctaca gatgccgcga ggggtgctgt gaacgcgccg atgacaaaaa ttttggattg
7021 gaatgggaca aggtactttg ccccaaatag tatgaagaca accagttatt cgggccagtt
7081 ttccagcaac cctgtgcata ggcaacccac tttaccccgc tctgaatccc caaaaatcaa
7141 ggttaatagt gattctgcta gtgtgtatag ttctgcatct actgctcctt cacaatcaac
7201 tcactcaacg gctttgactg cggggtctag ctcatctagg acaacatcct cttctgcagt
7261 agcttctacc ctatctagga ctagtgattg ggtgagagga caaaatgaaa ggcttagccc
7321 gtttatggat ggtgccctcc acacaacttt tgtcacacca ccatcgagca aggcttcatc
7381 atatgggtcg gtctcaaccg ttcccaaagc tgttttggac tcctggactc ctatgttcaa
7441 cacccatagg cagcctctct tcgctcatgt gcgcaggcga ggggagtcac agatttagtg
7501 aaaagattga ttaggttttc tttctttctt cttttccttt tctttctttt aaaaaaaaaa
7561 aaaaaaaaaa aaaaaaaaaa a
//