Typing tool
|
Complete norovirus genomes
KU757054 | GII.17 | ||
---|---|---|---|
GII.P17 |
ORF1: 1..2665 ORF2: 2646..4268 ORF3: 4268..5047LOCUS KU757054 5114 bp RNA linear VRL 28-SEP-2016 DEFINITION Norovirus Hu/GII/CN/2015/GII.17/FX150123-1, partial genome. ACCESSION KU757054 VERSION KU757054.1 KEYWORDS . SOURCE Norovirus Hu/GII/CN/2015/GII.17/FX150123-1 ORGANISM Norovirus Hu/GII/CN/2015/GII.17/FX150123-1 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 5114) AUTHORS Wang,X., Ding,J., Yong,W. and Xie,G. TITLE Genetic characterization of emergent GII.17 norovirus variants from 2013 to 2015 in Nanjing, China JOURNAL Unpublished REFERENCE 2 (bases 1 to 5114) AUTHORS Wang,X., Ding,J., Yong,W. and Xie,G. TITLE Direct Submission JOURNAL Submitted (24-FEB-2016) Department of Microbiology, Nanjing Municipal Center for Disease Control and Prevention, Zizhulin No. 2, Nanjing, Jiangsu 210003, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..5114 /organism="Norovirus Hu/GII/CN/2015/GII.17/FX150123-1" /mol_type="genomic RNA" /strain="Hu/GII/CN/2015/GII.17/FX150123-1" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1803562" /country="China: Nanjing" CDS <1..2665 /codon_start=2 /product="ORF1" /protein_id="AOR82918.1" /translation="IYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGC PKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV TGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSP SLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEG TVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP RGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDRQNSSGYPHHVRKNDYW SGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDL STMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD STQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVIECDFKIAINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLK EYGLKPTRPDKTEGPLVIIEDLNGLTFLRRTVTRDPAGWFGKLDQNSILTHLYWTRGP NHEDPSETMIPHAQRPVQLMALQGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQE SMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 2646..4268 /codon_start=1 /product="ORF2" /protein_id="AOR82919.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" CDS 4268..5047 /codon_start=1 /product="ORF3" /protein_id="AOR82920.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 catttactct ctactccaaa ttgctggtgc agccttcgtc acctcacgca tcgtgaggcg 61 catgaacata tcaaacctct ggtcgaagcc acccatcgag gagggtgatg agcctgaaga 121 cagaggagga tgccccaagc ccagggatga agatgacctc actattgact ctagagacat 181 taaagtggaa gggaagaagg gcaagaacaa gtctggccgg ggcaagaaac acacagcctt 241 ctcttccaag ggcctcagtg atgaagagta cgatgagtac aagagaatca gagaggagag 301 gaatggcaaa tactcaatag aggaatacct ccaagatagg gacagatact atgaagagct 361 tgccattgct aaggctactg aggaggactt ctgtgaggag gaggagatca aaatccgcca 421 gagaatcttc cgacccacca ggaagcagcg gaaagaggaa agggccacgc ttgggcttgt 481 cacaggatcg gaaatcagaa agaggaatcc agatgacttt aaaccaaaag gaaaattgtg 541 ggctgatgac aacaggagcg tggattacaa tgagaggata gattttgagg ctcccccgag 601 tgtttggtct aggatagtca actttggcac aggctgggga ttctgggttt ctccaagtct 661 ctttataact tcaacacacg tcataccaaa aggaatcact gaggcctttg gagtgcccat 721 aaaccaaatc caaattcaca aatctggaga attttgccgc ttgcggtttc caaagccaat 781 tagaccagac gtgagtggga tgatcttgga agagggcgcc cctgaaggca ctgttgtgtc 841 tattctcatc aaaaggacaa caggggagct gatgcctctt gcagtcagaa tggggactca 901 tgccacaatg aaaatccaag gtagaacggt gggtggtcag atgggtatgc ttctcactgg 961 ctcaaatgct aaaagcatgg atctaggcac aacgccaggt gactgcggat gtccatacat 1021 atacaaaagg ggcaatgacc ttgtggtcat tggggtgcac actgcagcag ctcgtggagg 1081 caacacggtc atatgtgcca cacagggaag tgaaggtgaa gccactcttg aaggaggtga 1141 caacaagggt acctattgtg gagcccccat tttgggacct ggcaatgcac caaaattgag 1201 cacaaagaca aaattctgga gatcctctaa cgcaccgctt cccccaggta cttatgaacc 1261 agcatacctt ggtgggagag acccgcgcgt gaagggaggc ccatctctgc aacaagttat 1321 gagagaccaa cttaaacctt ttacagagcc cagagggaag ccaccaaacc caaatgtctt 1381 agagtcagca aagaagacta tcatcaatgt tctggaacaa accattgacc cccctcaaaa 1441 gtggtcatat gcccaagctt gtgcatccct cgacagacaa aactccagtg gatacccgca 1501 ccacgtccgg aagaatgact attggagtgg tgaatccttc acaggaaaac ttgcagatca 1561 ggcttcaaaa gcaaatctca tgtatgagga aggcaagcac atgcaaccag tttacaccgc 1621 agcactcaaa gacgagctcg tgaaaactga caaaatttat ggcaaaatca agaaaagact 1681 cctgtggggt tctgacctct ccacaatgat tcgatgcgcc agagcatttg gtggtctcat 1741 ggatgaattc aaagcaaatt gtattacact ccctatcaga gttggtatga atatgaatga 1801 agatggtccc ataatatttg agaaacactc caggtacagg taccactatg atgctgatta 1861 ctcccgctgg gactccacac aacagcgggc agtgctggaa gcggcacttg aaatcatggt 1921 gagattttct gctgagccac agctggcaca aatagtggca gaggacctgc tgtcaccaag 1981 tgtggtgata gagtgcgatt tcaaaatcgc tatcaatgaa ggcctaccat ctggcgtgcc 2041 ttgcacctca caatggaatt ctattgccca ctggttactt accttgtgtg ccctttctga 2101 agtgacagga ttaggtcctg acatcataca agctaactcc atgtactctt tctatggtga 2161 tgatgagatt gtgagcacag acataaaatt ggacccagag aaattgaccg caaagctcaa 2221 agaatatggc cttaaaccca ctcggcccga caaaactgag gggccgttgg tgattattga 2281 ggacctgaat gggttgactt tcctccgccg aacagtcacc cgtgatccag caggttggtt 2341 tggaaagttg gaccaaaact ccatcctcac gcatttgtac tggacaagag gacccaacca 2401 tgaagacccc agtgagacca tgataccaca cgcacaaaga cctgtgcagc tcatggcact 2461 acaaggagaa tcctccctac atggaccctc attttacagc aaggttagca aattagtcat 2521 atctgaactt aaagagggag gaatggattt ttatgtgccc agacaagagt caatgttcag 2581 atggatgagg ttctcagatc taagcacatg ggagggcgat cgcaatctgg ctcccagttt 2641 tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa tgatggtgct gctggtctcg 2701 taccagaggg caacaacgag acccttcccc tagaaccagt tgcgggcgca gctatagccg 2761 cacccgtcac tggccaaaat aacataattg acccctggat tagaacaaat tttgtgcaag 2821 caccaaatgg agagttcaca gtgtcaccca gaaactctcc tggagaaatt ttattaaact 2881 tagagttggg ccctgatttg aacccttatc tggctcattt gtcaaggatg tacaatgggt 2941 atgctggtgg agtggaagtt caggttctcc tggcagggaa cgcgttcact gccggaaaga 3001 tcctcttcgc cgccgtcccg ccaaatttcc cagtggaatt cttaagccca gcccagatca 3061 caatgctccc acatttaata gtagatgtta ggactcttga accaattatg atcccactcc 3121 ctgatgttag gaatacattc ttccattata gtaaccagcc taacagccgc atgagattag 3181 tggctatgct ctatacccca ctcagatcta atggctcagg tgatgatgtc tttactgtct 3241 cttgcagggt tttgactagg cctactcctg attttgagtt cacttattta gtgccacctt 3301 ctgttgaatc taaaactaag cctttttcct tacctatttt aaccctttct gagctcacaa 3361 attcgaggtt cccagtcccc atcgattcgc ttttcaccgc ccagaataat gtgttgcagg 3421 tgcagtgtca aaatggcagg tgcacacttg atggtgagtt acaaggcaca acccagttgc 3481 tcccaactgg catctgtgca ttcagaggac gggtgacagc acaaattaac caacgtgaca 3541 ggtggcacat gcaactgcaa aacctcaatg gtacaacata tgacccaact gatgatgtgc 3601 cagccccgct gggtacacct gacttcaagg gcgtcgtgtt tgggatggta agccaaagaa 3661 atgtgggtaa tgatgcgcct ggctcaacta gagcccaaca ggcgtgggtt tcaacctata 3721 gcccccaatt tgtccccaaa ttaggttctg tcaatcttag aattagtgat aatgatgatt 3781 tccaattcca gccgacaaaa ttcacaccag tgggcgtcaa tgatgacgat gatggccacc 3841 cgttcagaca atgggaacta ccaaactatt caggggagct taccttgaat atgaatcttg 3901 cccccccagt tgctccaaat tttcctggtg aacaattgtt attcttcaga tctttcgtgc 3961 catgctcagg aggttacaac caaggtatta tagattgtct tattccccaa gaatggatcc 4021 aacacttcta tcaggaatca gcaccctccc agtcagacgt ggccctaatc aggtatgtca 4081 accccgatac gggacgtaca ctgtttgaag caaaattgca cagatctggt tacatcactg 4141 tggctcactc tggagactat cctcttgttg ttccggctaa tggacacttt agatttgatt 4201 cttgggtaaa tcagttttac tcactcgccc caatgggaac tgggaatggg cgaaggaggg 4261 ctcagtaatg gctggggctt tcattgcagg attggcaggc gacatgctca cgtcatctgt 4321 gggctccctt gtgaacgcag gggcaaacgc catcaaccaa aagatagact ttgaaaacaa 4381 caaacaactc cagtctgctt cctttcagca tgataaagag atgctccaag cgcaggtgag 4441 ggcaaccaag cagctgcaat ctgaaatgat agccctaaaa cagggggttt tggccgcagg 4501 cggcttttcc cccactgatg cagcaagggg atccattggt gcacccatga caaaggtgct 4561 tgactggtct ggcactcgat actgggcgcc caattccaca aagacaactg gctattcggg 4621 acaattcacc tcttcacctg tgcatatgtc tagcccaaat gctccacaat caaaacctgc 4681 aaagcctagg tctctagctc cttcctcttc ttctagcagt gtctatagta tgtatactca 4741 atctactcat ttaacatctg gctcttctag taatgcttct tctgcctcca caaaattgac 4801 aaatttaagc tctggctcct ctcaaaacag aacagcagag tgggtaaatc aacagagaag 4861 tcttagccct ttcatgagtg gcgcacttaa catctcacat gtcacgccac cctcaagtag 4921 ggcttccagt tctgggacgg tctcgaccgt gcccaaggaa gttttggact cctggacgtc 4981 tgcgtttaac acacacagac agccgctctt cgcacacctc agagtgaggg gggagtcacg 5041 tgtttagtga aaagaaataa ttggctataa tgtgatttct ttctaaaatt tggctaattt 5101 gtatctttta aaaa //