Typing tool
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Typing tool
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Complete norovirus genomes
| KU757053 | GII.17 | |
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| GII.P17 |
ORF1: 1..2665
ORF2: 2646..4268
ORF3: 4268..5047
LOCUS KU757053 5114 bp RNA linear VRL 28-SEP-2016
DEFINITION Norovirus Hu/GII/CN/2015/GII.17/TF150108-1, partial genome.
ACCESSION KU757053
VERSION KU757053.1
KEYWORDS .
SOURCE Norovirus Hu/GII/CN/2015/GII.17/TF150108-1
ORGANISM Norovirus Hu/GII/CN/2015/GII.17/TF150108-1
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 5114)
AUTHORS Wang,X., Ding,J., Yong,W. and Xie,G.
TITLE Genetic characterization of emergent GII.17 norovirus variants from
2013 to 2015 in Nanjing, China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5114)
AUTHORS Wang,X., Ding,J., Yong,W. and Xie,G.
TITLE Direct Submission
JOURNAL Submitted (24-FEB-2016) Department of Microbiology, Nanjing
Municipal Center for Disease Control and Prevention, Zizhulin No.
2, Nanjing, Jiangsu 210003, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..5114
/organism="Norovirus Hu/GII/CN/2015/GII.17/TF150108-1"
/mol_type="genomic RNA"
/strain="Hu/GII/CN/2015/GII.17/TF150108-1"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1903563"
/country="China: Nanjing"
CDS <1..2665
/codon_start=2
/product="ORF1"
/protein_id="AOR82915.1"
/translation="IYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGC
PKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV
TGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSP
SLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEG
TVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKQTSSGYPHHVRKNDYW
SGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
STMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD
STQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVIECDFKIAINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGP
NHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQE
SMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 2646..4268
/codon_start=1
/product="ORF2"
/protein_id="AOR82916.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 4268..5047
/codon_start=1
/product="ORF3"
/protein_id="AOR82917.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPNEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 catttactct ctactccaaa ttgctggtgc agccttcgtc acctcacgca tcgtgaggcg
61 catgaacata tcaaacctct ggtcgaagcc acccatcgag gagggtgatg agcctgaaga
121 cagaggagga tgccccaagc ccagggatga agatgacctc actattgact ctagagacat
181 taaagtggaa gggaagaagg gcaagaacaa gtctggccgg ggcaagaaac acacagcctt
241 ctcttccaag ggcctcagtg atgaagagta cgatgagtac aagagaatca gagaggagag
301 gaatggcaaa tactcaatag aggaatacct ccaagatagg gacagatact atgaagagct
361 tgccattgct aaggccactg aggaggactt ctgtgaggag gaggagatca aaatccgcca
421 gagaatcttc cgacccacca ggaagcagcg gaaagaggaa agggccacgc ttgggcttgt
481 cacaggatcg gaaatcagaa agaggaatcc agatgacttt aaaccaaaag gaaaattgtg
541 ggctgatgac aacaggagcg tggattacaa tgagaggata gattttgagg ctcccccgag
601 tgtttggtct aggatagtca actttggcac aggctgggga ttctgggttt ctccaagtct
661 ctttataact tcaacacacg tcataccaaa aggaatcact gaggcctttg gagtgcccat
721 aaaccaaatc caaattcaca aatctggaga attttgccgc ttgcggtttc caaagccaat
781 tagaccagac gtgagtggga tgatcttgga agagggcgcc cctgaaggca ctgttgtgtc
841 tattctcatc aaaaggacaa caggggagct gatgcctctt gcagtcagaa tggggactca
901 tgccacaatg aaaatccaag gtagaacggt gggtggtcag atgggtatgc ttctcactgg
961 ctcaaatgct aaaagcatgg atctaggcac aacgccaggt gactgcggat gtccatacat
1021 atacaaaagg ggcaatgacc ttgtggtcat tggggtgcac actgcagcag ctcgtggagg
1081 caacacggtc atatgtgcca cacagggaag tgaaggtgaa gccactcttg aaggaggtga
1141 caacaagggt acctattgtg gagcccccat tttgggacct ggcaatgcac caaaattgag
1201 cacaaagaca aaattctgga gatcctctaa cgcaccgctt cccccaggta cttatgaacc
1261 agcatacctt ggtgggagag acccgcgcgt gaagggaggc ccatctctgc aacaagttat
1321 gagagaccaa cttaaacctt ttacagagcc cagagggaag ccaccaaacc caaatgtctt
1381 agagtcagca aagaagacta tcatcaatgt tctggaacaa accattgacc cccctcaaaa
1441 gtggtcatat gcccaagctt gtgcatccct cgacaaacaa acctccagtg gatacccgca
1501 ccacgtccgg aagaatgact attggagtgg tgaatccttc acaggaaaac ttgcagatca
1561 ggcttcaaaa gcaaatctca tgtatgagga aggcaagcac atgcaaccag tttacaccgc
1621 agcactcaaa gacgagctcg tgaaaactga caaaatttat ggcaaaatca agaaaagact
1681 cctgtggggt tctgacctct ccacaatgat tcgatgcgcc agagcatttg gtggtctcat
1741 ggatgaattc aaagcaaatt gtattacact ccctatcaga gttggtatga atatgaatga
1801 agatggtccc ataatatttg agaaacactc caggtacagg taccactatg atgctgatta
1861 ctcccgctgg gactccacac aacagcgggc agtgctggaa gcggcacttg aaatcatggt
1921 gagattttct gctgagccac agctggcaca aatagtggca gaggacctgc tgtcaccaag
1981 tgtggtgata gagtgcgatt tcaaaatcgc tatcaatgaa ggcctaccat ctggcgtgcc
2041 ttgcacctca caatggaatt ctattgccca ctggttactt accctgtgtg ccctttctga
2101 agtgacagga ttaggtcctg acatcataca agctaactcc atgtactctt tctatggtga
2161 tgatgagatt gtgagcacag acataaaatt ggacccagag aaattgaccg caaagctcaa
2221 agaatatggc cttaaaccca ctcggcccga caaaactgag gggccgttgg tgattagtga
2281 ggacctgaat gggttgactt tcctccgccg aacagtcacc cgtgatccag caggttggtt
2341 tggaaagttg gaccaaaact ccatcctcag gcagttgtac tggacaagag gacccaacca
2401 tgaagacccc agtgagacca tgataccaca cgcacaaaga cctgtgcagc tcatggcact
2461 actaggagaa tcctccctac atggaccctc attttacagc aaggttagca aattagtcat
2521 atctgaactt aaagagggag gaatggattt ttatgtgccc agacaagagt caatgttcag
2581 atggatgagg ttctcagatc taagcacatg ggagggcgat cgcaatctgg ctcccagttt
2641 tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa tgatggtgct gctggtctcg
2701 taccagaggg caacaacgag acccttcccc tagaaccagt tgcgggcgca gctatagccg
2761 cacccgtcac tggccaaaat aatataattg acccctggat tagaacaaat tttgtgcaag
2821 caccaaatgg agagttcaca gtgtcaccca gaaactctcc tggagaaatt ttattaaatt
2881 tagagttggg ccctgatttg aacccttatt tggctcattt gtcaaggatg tacaatgggt
2941 atgctggtgg agtggaagtt caggttctcc tggcagggaa cgcgttcact gccggaaaga
3001 tcctcttcgc cgccgtcccg ccaaatttcc cagtggaatt cttaagccca gcccagatca
3061 caatgctccc acatttaata gtagatgtta ggactcttga accaattatg atcccactcc
3121 ctgatgttag gaatacattc ttccattata gtaaccagcc taacagccgc atgagattag
3181 tggctatgct ctacacccca ctcagatcta atggctcagg tgatgatgtc tttactgtct
3241 cttgcagggt tttgactagg cctactcctg attttgagtt cacttattta gtgccacctt
3301 ctgttgaatc taaaactaag cctttttcct tacctatttt aaccctttct gagctcacaa
3361 attcgaggtt tccagtcccc atcgattcgc ttttcaccgc ccagaataat gtgttgcagg
3421 tgcagtgtca aaatggcagg tgtacacttg atggtgagtt acagggcaca acccagttgc
3481 tcccaactgg catctgtgca ttcagaggac gggtgacagc acaaattaac caacgtgaca
3541 ggtggcacat gcaactgcaa aacctcaatg gtacaacata tgacccaact gatgatgtgc
3601 cagccccgct gggtacacct gacttcaagg gcgtcgtgtt tgggatggta agccaaagaa
3661 atgtgggtaa tgatgcgcct ggctcaacca gagcccaaca ggcgtgggtt tcaacctata
3721 gcccccaatt tgtccccaaa ttaggttctg tcaatcttag aattagtgat aatgatgatt
3781 tccaattcca gccgacaaaa ttcacaccag tgggcgtcaa tgatgacgat gatggccacc
3841 cgttcagaca atgggaacta ccaaactatt caggggagct caccttgaat atgaatcttg
3901 cccccccagt tgctccaaat tttcctggtg aacaattgtt attcttcaga tctttcgtgc
3961 catgctcagg aggttacaac caaggtatta tagattgtct tattccccaa gaatggatcc
4021 aacacttcta tcaggaatca gcaccctccc agtcagacgt ggccctaatc aggtatgtca
4081 accccgatac gggacgtaca ctgtttgaag caaaattgca cagatctggt tacattactg
4141 tggctcattc tggagactat cctcttgttg ttccggctaa tggacacttt agatttgatt
4201 cttgggtaaa tcagttttac tcactcgccc caatgggaac tgggaatggg cgaaggaggg
4261 ctcagtaatg gctggggctt tcattgcagg attggcaggc gacatgctca cgtcatctgt
4321 gggctccctt gtgaacgcag gggcaaacgc catcaaccaa aagatagact ttgaaaacaa
4381 caaacaactc cagtctgctt cctttcagca tgataaagag atgctccaag cgcaggtgag
4441 ggcaaccaag cagctgcaat ctgaaatgat agccctaaaa cagggggttt tggccgcagg
4501 cggcttttcc cccactgatg cagcaagggg atccattggt gcacccatga caaaggtgct
4561 tgactggtct ggcactcgat actgggcgcc caattccaca aagacaactg gctattcggg
4621 acaattcacc tcttcacctg tgcatatgtc tagcccaaat gctccacaat caaaacctgc
4681 aaagcctagg tctctagctc cttcctcttc ttctagcagt gtctatagta tgtatactca
4741 atctactcat ttaacatctg gctcttctag taatgcttct tctgcctcca caaaattgac
4801 aaatttaagc tctggctcct ctcaaaacag aacagcagag tgggtaaatc aacagagaag
4861 tcttagccct ttcatgagtg gcgcacttaa catctcacat gtcacgccac cctcaagtag
4921 ggcttccagt tctgggacgg tctcgaccgt gcccaatgaa gttttggact cctggacgtc
4981 tgcgtttaac acacacagac agccgctctt cgcacacctc agagtgaggg gggagtcacg
5041 tgtttagtga aaagaaataa ttggctataa tgtgatttct ttctaaaatt tggctaattt
5101 gtatctttta aaaa
//