Typing tool
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Typing tool
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Complete norovirus genomes
| KU757047 | GII.17 | |
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| GII.P17 |
ORF1: 5..5107
ORF2: 5088..6704
ORF3: 6704..7483
LOCUS KU757047 7550 bp RNA linear VRL 28-SEP-2016
DEFINITION Norovirus Hu/GII/CN/2014/GII.17/1401084, complete genome.
ACCESSION KU757047
VERSION KU757047.1
KEYWORDS .
SOURCE Norovirus Hu/GII/CN/2014/GII.17/1401084
ORGANISM Norovirus Hu/GII/CN/2014/GII.17/1401084
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7550)
AUTHORS Wang,X., Ding,J., Yong,W. and Xie,G.
TITLE Genetic characterization of emergent GII.17 norovirus variants from
2013 to 2015 in Nanjing, China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7550)
AUTHORS Wang,X., Ding,J., Yong,W. and Xie,G.
TITLE Direct Submission
JOURNAL Submitted (23-FEB-2016) Department of Microbiology, Nanjing
Municipal Center for Disease Control and Prevention, Zizhulin No.
2, Nanjing, Jiangsu 210003, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7550
/organism="Norovirus Hu/GII/CN/2014/GII.17/1401084"
/mol_type="genomic RNA"
/strain="Hu/GII/CN/2014/GII.17/1401084"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1803540"
/country="China: Nanjing"
CDS 5..5107
/codon_start=1
/product="ORF1"
/protein_id="AOR82897.1"
/translation="MASNDASAAVAGKNNNNDKEKSSSDSLFSNMTVTFKKALGARPK
QPPPGETKQIQKPPRPPTPELVKKIPPPPPNGEDEPKIVYKVGEGVSGLPNLTTVAQP
DAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAI
SLAKIELTPLSLYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLND
SWLSRRMIQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIG
KLRPLNILNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLS
TKSASPDIVGTINSLLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARE
LAKKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADT
CPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIE
KAKRDFPGQPDMWKDHYRPDFTHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIAR
ASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKT
LDELKQAIKNISIKKCQIVYNGCTYTMESDGRSKVVVEKVQNATVQTNNELVGALHHL
RSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDKGG
CPKPRDEDDLTVDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERN
GKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGL
VTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVS
PSLFITSTHVIPKGITEAFGVPISQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPE
GTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPG
DCGCPYIYKRGNDFVAIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPIL
GPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTE
PRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDY
WSGESFTGKLADQASKANLMYEEGKHMQPIYTAALKDELVKTDKIYGKIKKRLLWGSD
LSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRW
DSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVEVGDFKIAINEGLPSGVPC
TSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKL
KEYGLKPTRPDKTEGPLVISGDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRG
PNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQ
ESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5088..6704
/codon_start=1
/product="ORF2"
/protein_id="AOR82898.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDHRDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGV
ASQRNVGNDAPGSTRAHEAVISTYSPQFVPKLGSVNFRSNDNDFQLQPTKFTPVGIND
DGDHPFRQWELPDYSGLLTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIVDCL
IPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 6704..7483
/codon_start=1
/product="ORF3"
/protein_id="AOR82899.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSLAPSSSSSSVYSMSTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 gaagatggcg tctaacgacg cttccgctgc cgttgctggc aaaaacaaca acaacgacaa
61 ggagaaatct tcaagtgaca gcttgttttc taacatgact gttactttta agaaagccct
121 cggggcgcgg cctaaacaac cgcccccggg agaaacaaaa caaatacaaa aaccaccaag
181 gccaccgaca ccggaattgg tgaagaaaat acccccaccc ccacccaatg gcgaggatga
241 accaaagata gtgtataagg tgggagaggg tgtgtctggg ctgcccaacc taacaactgt
301 ggcacagcct gacgcacaaa acacagctta tagtgttccc ccacttagcc agagagaagt
361 cggcgaagct aaagagccgc tgcctggctc cattctggaa atgtgggatg gtgagatcta
421 ccactatggg ctgtatgttg agcgggggca tgtactcgga gtacacaaac cacctgctgc
481 aataagcctt gccaaaattg aattaacacc gctgtctctc tactggagag tggtctacac
541 tccccagtat ttgatagctc cagaaactct taagaacttg aatggagaga ctttcccata
601 cacggccttt gacaacaact gttatgcctt ctgttgttgg gtcctagacc tcaacgactc
661 ctggcttagc aggagaatga tccaaagaac aactggattc ttcagaccgt atcaggattg
721 gaacagaaaa cccttaccaa ccatggatga accaaaaatc aagaaggccg cgaatgctgt
781 tctgtgcgct ctctcctcac tcttcactag acccattaag gacatcattg gaaagcttag
841 accactgaac attcttaata tactggcaac ttgtgactgg acttttgcag gcatagtgga
901 atccatgatc cttcttgctg aactctttgg ggtgttctgg acccccccag atgtgtctgc
961 gatgattgct cccttactcg gtgactacga gatgcaaggc cccgaagacc tggccgtgga
1021 acttgtgccc gtggtaatgg gaggaatagg tttggtgtta ggattcacca aggaaaagat
1081 cggcaagatg ctttcatcag ctgcgaccac acttagggcc tgcaaggatc taggatctta
1141 tggattggag atactcaaat tggtcatgaa gtggttcttc cccaagaagg aggaggctaa
1201 cgaactagcc atggtgaggg ccattgagga tgcagtcctg gatttggagg caatagaaaa
1261 caaccacatg accacccttc tcaaggataa agacagcctg gccacataca tgaggactct
1321 tgacttggaa gaagagaaag caaggaaact gtcaaccaaa tcggcgtcac ctgacatcgt
1381 gggtacaata aactcattat tggcaaggat agcagccgcc aggtcactgg tccacaaggc
1441 taaggaggag ctctcgagca gacagagacc tgttgttgta atgatatcag gtagaccagg
1501 tataggaaag acccatctgg ccagagagct agccaagaaa gttgcgtcaa cactgtcagg
1561 cgaccaaagg attggactga tacctagaaa tggcgtcgac cattgggacg cctacaaggg
1621 agaaagggtg gttctgtggg atgattatgg tatgagcaac cctatacagg acgcactgag
1681 gctccaagaa ttggctgaca cctgtcctct gaccctgaat tgtgacagga ttgaaaacaa
1741 aggaaaagtg ttcgacagtg atgccataat tataacaacc aaccttgcaa acccagcacc
1801 actggactat gtcaactttg aggcctgctc tagacgcata gacttcttgg tgtatgcaga
1861 cgcacctgac atcgagaaag ctaagcgtga tttccctggc caaccagata tgtggaaaga
1921 ccattacaga ccagacttca cacacattaa acttcagctg gcaccacagg gaggttttga
1981 caaaaatggc aacaccccac atggcaaagg tgtggtgaag tctctgacga ttggttctct
2041 gatcgccagg gcttctggct tgctccacga gagaatggat gaattcgagc tccagggctc
2101 tgacctgcca accttcaatt ttgaccgcaa caaagtcgcc gccttcagac aattagcagc
2161 tgaaaacaaa tatggtctta tggatacact gagggtcggc aaccaactga aaagtgtcaa
2221 aaccctggat gagctgaaac aggccataaa gaacatcagt atcaagaagt gccagatagt
2281 gtataatgga tgcacctata ccatggaatc tgatgggagg agcaaggttg tggttgaaaa
2341 ggtacaaaac gcaacagttc aaaccaacaa tgaacttgta ggggcactcc accacctgag
2401 atctgcaagg ataagatact atgttaaatg tttccaagaa gccatttact ctctactcca
2461 aattgctggt gcagccttcg tcacctcacg catcgtgagg cgcatgaaca tctcaaacct
2521 ctggtcgaag ccacccatcg aggagggtga tgagcctgaa gacaaaggag gatgccccaa
2581 gcccagggat gaagatgacc tcactgttga ctctagagac attaaagtgg aagggaagaa
2641 gggcaagaac aagtctggtc ggggcaagaa acacacagcc ttctcatcca agggcctcag
2701 tgatgaagag tacgatgagt acaagagaat cagagaggag aggaatggca aatactcaat
2761 agaggaatac ctccaagata gggacagata ctatgaagag cttgccattg ctaaggccac
2821 tgaggaggac ttctgtgaag aggaggagat caaaatccgc cagagaatct tccgacccac
2881 caggaagcag cggaaagagg aaagggccac gcttgggctt gtcacaggat cggaaatcag
2941 aaagaggaat ccagatgact ttaaaccaaa aggaaaattg tgggctgatg acaacaggag
3001 cgtggattac aatgagagga tagattttga ggctcccccg agtgtttggt ctaggatagt
3061 caactttggc acaggctggg gattctgggt ttctccaagt ctctttataa cttcaacaca
3121 cgtcatacca aaaggaatca ctgaggcctt tggagtaccc ataagccaaa tccaaattca
3181 caaatctgga gaattttgcc gcttgcggtt tccaaagcca atcagaccag acgtgagtgg
3241 gatgatcttg gaagagggtg cccctgaagg cactgttgtg tctattctca tcaaaaggac
3301 aacaggggag ctgatgcctc ttgcagtcag aatggggact catgccacaa tgaaaatcca
3361 aggtagaacg gtgggtggtc agatgggtat gcttctcact ggctcaaatg ctaaaagcat
3421 ggatctaggt acaacgccag gtgattgcgg gtgtccatac atatacaaaa ggggcaatga
3481 cttcgtggcc attggggtgc acactgcagc agcacgtgga ggcaacacgg tcatatgtgc
3541 cacacaggga agtgaaggtg aagccactct tgaaggaggt gacaacaagg gcacctattg
3601 tggagccccc attttgggac ctggcaatgc accaaaattg agcacaaaaa caaaattctg
3661 gagatcctct aacgcaccgc ttcccccagg tacttatgaa ccagcatacc ttggtgggag
3721 agacccgcgc gtgaagggag gcccatctct gcaacaagtt atgagagacc aacttaaacc
3781 ttttacagag cccagaggga agccaccaaa cccaaatgtc ctagagtcag caaagaagac
3841 tatcatcaat gttctagaac aaaccattga cccccctcaa aagtggtcat atgcccaagc
3901 ttgtgcatcc ctcgacaaaa caacctccag tggatacccg caccacgtcc ggaagaatga
3961 ctattggagt ggtgaatcct tcacagggaa acttgcagac caggcttcaa aagcaaatct
4021 catgtatgag gaaggcaagc acatgcaacc aatttacacc gcagcactca aagacgagct
4081 cgtgaaaact gacaaaattt atggcaagat caagaaaaga ctcctgtggg gttctgacct
4141 ctccaccatg attcgatgcg ccagagcatt tggtggtctc atggatgagt tcaaagcaaa
4201 ttgtattaca ctccctatca gagttggtat gaatatgaat gaagacggtc ccataatatt
4261 tgagaaacac tccaggtaca ggtaccacta tgatgctgat tactcccgct gggactccac
4321 acaacagcgg gcagtgctgg aagcggcact tgaaatcatg gtgagatttt ctgctgagcc
4381 acagctggca caaatagtgg cagaggacct gctgtcacca agtgtggttg aggtgggcga
4441 tttcaaaatt gctatcaatg aaggcctacc atctggcgtg ccttgcacct ctcaatggaa
4501 ttctattgcc cactggttac tcaccctgtg tgccctttct gaagtgacag gactaggtcc
4561 tgacatcata caagccaact ccatgtactc tttctatggt gatgatgaga ttgtgagcac
4621 agacataaaa ttggacccag agaaattgac cgcaaagctc aaagaatatg gccttaaacc
4681 cactcggccc gacaaaactg aggggccgct ggtgattagt ggagacctga atgggttgac
4741 tttcctccgc cgaacagtca cccgtgatcc agcaggttgg tttggaaagt tggaccaaaa
4801 ctccatcctc aggcagttgt actggacaag aggacccaac catgaagacc ccagtgagac
4861 catgatacca cacgcacaga gacctgtgca gctcatggca ctactaggag aatcctccct
4921 acatggaccc tcattttaca gcaaggttag caaactggtc atatctgaac ttaaggaggg
4981 aggaatggat ttttatgtgc ccagacaaga gtcaatgttc agatggatga ggttctcaga
5041 tctaagcaca tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt
5101 cgaatgacgc cgctccatct aatgatggtg ctgctggtct cgtaccagag ggcaacaacg
5161 agacccttcc cctagaacca gttgcgggcg cagctatagc cgcacccgtc actggccaaa
5221 acaacataat tgacccctgg attagaacaa attttgtgca agcaccaaat ggagagttca
5281 cagtgtcacc cagaaactcc cctggagaaa ttttactaaa cctagagttg ggccctgatt
5341 tgaaccctta tttggctcat ttgtcaagga tgtacaatgg gtatgctggt ggagtggaag
5401 ttcaggttct cctggcaggg aacgcgttca ctgccggaaa gatcctcttc gccgccgtcc
5461 cgccaaattt cccagtggaa ttcttaagcc cagcccagat cacaatgctc ccacatttaa
5521 tagtagatgt caggactctt gaaccaatta tgatcccact ccctgatgtt aggaatacat
5581 tcttccatta taacaaccag cctaacagcc gcatgagatt agtggctatg ctctacaccc
5641 cccttagatc taatggctca ggtgatgatg tctttactgt ctcttgcagg gttttgacta
5701 ggcctactcc tgattttgag ttcacttatt tagtgccacc ttctgttgaa tctaagacta
5761 agcctttttc cttacctatt ttaacccttt ctgagctcac aaattcgagg ttcccagtcc
5821 ccatcgattc gcttttcacc gcccagaata atgtgttgca ggtgcagtgt caaaatggca
5881 ggtgcacact tgatggtgag ttacaaggca caacccagtt gctcccatct ggcatctgtg
5941 cattcagagg acgggtgaca gcagaaactg accatcgtga caagtggcac atgcaactgc
6001 aaaacctcaa tggcacaaca tatgacccaa ctgatgatgt gccagccccg ctgggtacac
6061 ctgacttcaa gggcgtcgtg tttggggtag caagccaaag aaatgtgggt aatgacgcgc
6121 ctggctcaac cagggcccat gaggcggtga tttcaaccta tagcccccaa tttgtcccca
6181 aattaggttc tgtcaatttt agaagtaatg ataatgattt ccaattgcag ccgacaaaat
6241 tcacaccagt gggcatcaat gacgatggtg accacccgtt cagacagtgg gaactaccag
6301 actattcagg gctgcttacc ttgaatatga accttgcccc cccggttgct ccaaatttcc
6361 ctggtgaaca attattattc ttcagatctt ttgtgccatg ctcaggaggt tacaaccaag
6421 gcattgtaga ttgtcttatt ccccaagaat ggatccaaca cttctatcag gaatcagcgc
6481 cctcccagtc agacgtggcc ctaatcaggt atgttaaccc cgatacggga cgtacactgt
6541 ttgaagcaaa attgcacaga tctggttaca ttactgtggc tcactctgga gactatcctc
6601 ttgttgttcc ggctaatgga tactttagat ttgattcttg ggtaaatcag ttttactcac
6661 tcgccccaat gggaactggg aatgggcgaa ggagggctca gtaatggctg gagctttcat
6721 tgcaggattg gcaggcgaca tgctcacgtc atctgtgggc tccctggtga acgcaggggc
6781 aaacgccatc aaccaaaaga tagactttga aaacaacaaa caactccagt ctgcttcctt
6841 tcagcatgat aaagaaatgc tccaagcgca ggtgaaggca accaagcagc tgcaatctga
6901 aatgatagcc ctaaaacagg gggttttggc cgcaggcggc ttttccccca ctgatgcagc
6961 aaggggagcc attggtgcac ccatgacaaa ggtgcttgac tggtctggca ctcgatactg
7021 ggcacccaat tccacaaaga caactggtta ttcgggacaa ttcacctctt cacctgtgca
7081 catgcctagc ccaaatgctc cacaatcaaa acctgcaaag cctaggtctc tagctccttc
7141 ctcttcttct agtagtgtct atagtatgtc tactcaatca actcatttaa catctggctc
7201 ttctagtaat gcttcttctg cctctacaaa attgacaaac ttaagctctg gctcctctca
7261 aaacagaaca gcagagtggg tgaaccaaca gagaagtctt agccctttca tgagtggcgc
7321 actcaatatc tcacatgtca cgccaccctc aagtagggct tccagttctg ggacggtctc
7381 gaccgtgccc aaggaagttt tggactcctg gacgtctgcg tttaacacac acagacagcc
7441 gctcttcgca cacctcagag tgagggggga gtcacgtgtt tagtgaaaag aaataattgg
7501 ctataatgtg atttcttttt aaaatttggc taatttgtat cttttaaaaa
//