Typing tool
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Typing tool
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Complete norovirus genomes
| KU678205 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..1734
ORF2: 1715..3337
ORF3: 3337..3813
LOCUS KU678205 3813 bp RNA linear VRL 01-MAR-2017
DEFINITION Norovirus 16-J-1/2016/GII.Pe/GII.4 Sydney_2012 polyprotein gene,
partial cds; VP1 gene, complete cds; and VP2 gene, partial cds.
ACCESSION KU678205
VERSION KU678205.1
KEYWORDS .
SOURCE Norovirus 16-J-1/2016/GII.Pe/GII.4 Sydney_2012
ORGANISM Norovirus 16-J-1/2016/GII.Pe/GII.4 Sydney_2012
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3813)
AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Liao,W.-T.
TITLE Norovirus GII.Pe/GII.4 Sydney_2012 gastroenteritis outbreaks
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3813)
AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Liao,W.-T.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2016) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..3813
/organism="Norovirus 16-J-1/2016/GII.Pe/GII.4 Sydney_2012"
/proviral
/mol_type="genomic RNA"
/isolate="16-J-1/2016/GII.Pe/GII.4 Sydney_2012"
/isolation_source="stool specimen from a 35-year female
with diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1961577"
/country="Taiwan"
/collection_date="Jan-2016"
/note="genotype: GII.4"
CDS <1..1734
/note="non-structure protein"
/codon_start=1
/product="polyprotein"
/protein_id="AQT25669.1"
/translation="GGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHT
AAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTTP
LPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVLEAAKKTIINV
LEQTIDPPQKWSFAQACASLDKTTSSGHPHHTRKNDCWNGESFTGKLADQASKANLMF
EEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCARAFGGLMDELKAH
CVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAALEIMVKFSP
EPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLCALSEVT
DLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISE
DLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHSQRPIQLM
SLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNL
APSFVNEDGVE"
CDS 1715..3337
/note="major structure protein"
/codon_start=1
/product="VP1"
/protein_id="AQT25670.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKVQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 3337..>3813
/note="minor structure protein"
/codon_start=1
/product="VP2"
/protein_id="AQT25671.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGTLPGRANLRDAVPARGSSSKS"
ORIGIN
1 ggagggcaaa tgggtatgct cctgacagga tccaacgcca agagtatgga cctaggcaca
61 acaccaggcg actgcggctg cccctacatc tacaagaggg ggaatgacta cgtggtcata
121 ggagtccata cggccgctgc ccgtggagga aacactgtca tatgtgccac ccagggaagt
181 gagggagagg ccacacttga aggaggtgac agtaaaggga catactgtgg cgcaccaatc
241 ttgggcccag ggagcgctcc gaagctcagt accaagacta agttttggag atcatccaca
301 acaccactcc cacctggcac ctacgaacca gcctacctcg gtggcaaaga ccctagagtc
361 aaaggtggcc cttcattgca acaagttatg agggaccagc tgaagccatt cacagaaccc
421 agaggcaaac caccaagacc aaatgtgttg gaagctgcca agaaaaccat catcaatgtc
481 cttgaacaaa caattgatcc accccaaaaa tggtcatttg cgcaagcttg cgcatccctt
541 gacaaaacca cctccagcgg ccacccgcac cacacgcgga aaaacgactg ttggaatggg
601 gagtccttca caggaaaatt ggctgatcaa gcctccaagg ccaacctaat gtttgaagag
661 ggaaagaaca tgactccagt ctacacaggt gcacttaaag atgagttggt aaagaccgat
721 aaagtttatg gtaaggtcaa gaagaggctt ctgtggggtt cagatctggc gaccatgata
781 cggtgcgccc gagcttttgg aggccttatg gatgaactca aggcacactg tgtcacactc
841 cctgtcagag ttggtatgaa catgaatgag gatggcccca tcatcttcga gaagcactcc
901 agatatagat atcactatga tgctgactat tcccggtggg actcaacaca acaaagggat
961 gtgctagcag cagcactaga aatcatggtt aagttctctc cagaaccaca cctggcccag
1021 atagttgcag aagacctcct ctcccctagc gtgatggatg taggtgactt tcaaatatca
1081 ataagtgagg gtctcccctc tggggtacct tgtacctccc agtggaattc catcgcccac
1141 tggctcctca ccctgtgtgc actctctgaa gtcacggacc tgtcccctga tatcattcag
1201 gccaactctc ttttctcctt ctatggtgat gatgagattg taagcacaga cataaagttg
1261 gacccagaaa agctgacagc aaaactcaaa gagtacgggc tgaaaccaac ccgccccgac
1321 aaaactgaag gaccccttgt tatctctgaa gacctggatg gtctgacatt cctccggaga
1381 actgtgaccc gtgatccagc tggctggttt ggaaaattgg aacaaagttc aattcttagg
1441 caaatgtact ggaccagggg tcccaaccat gaagatccat ttgaaacaat gataccacac
1501 tcccaaagac ccatacaatt gatgtccttg ctgggcgagg ctgcactcca cggcccggca
1561 ttctacagca aaattagcaa attagtcatt gcagagttga aggaaggtgg catggatttt
1621 tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct gagcacgtgg
1681 gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga gtgacgccaa
1741 cccatctgat gggtccgcag ccaacctcgt cccagaggtc aacaatgagg ttatggctct
1801 ggagcccgtt gttggtgccg ccattgcggc acctgtagcg ggccaacaaa atgtaattga
1861 cccctggatt agaaacaatt ttgtacaagc ccctggtgga gagtttacag tatcccctag
1921 aaacgctcca ggtgaaatac tatggagcgc gcccttgggc cctgatctaa atccctacct
1981 atcccatttg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc aggtaattct
2041 cgcggggaac gcgttcaccg ccgggaaggt catatttgca gcagtcccac caaattttcc
2101 aactgaaggc ttgagcccca gccaggtcac tatgttcccc catatagtag tagatgttag
2161 gcaattagag cctgtgttga ttcccttacc cgatgttagg aataatttct atcattacaa
2221 tcaatcaaat gaccccacca ttaagttgat agcaatgttg tatacaccac ttagggctaa
2281 taatgctggg gatgatgtct tcacagtttc ttgccgagtt ctcacgagac catcccccga
2341 ttttgacttc atatttctag tgccacccac agttgagtca agaactaaac cattctctgt
2401 cccagtttta actgttgagg agatgaccaa ttcaaggttc cccattcctt tggaaaagtt
2461 gttcacgggt cccagcagtg cctttgttgt ccaaccacaa aacggtaggt gcacgactga
2521 tggcgtgctc ctaggcacca cccaactgtc tcctgtcaac atctgcacct tcagaggaga
2581 tgtcacccat atcacaggta gtcataatta cacaatgaat ttggcttctc aaaattggag
2641 caattacgac ccaacagaag aaatcccagc ccctctagga actccagact ttgtggggaa
2701 ggttcaaggc gtgcttaccc aaaccacaag gacagatggc tcaacacgcg gccacaaagc
2761 cacagtgtac actgggagcg ccgactttgc tccaaaactg ggtagagttc aatttgaaac
2821 tgacacaaac catgattttg aagccaacca aaacacaaag ttcaccccag ttggtgtcat
2881 ccaagatggt ggcaccaccc accggaatga accccaacag tgggtgctcc caagttactc
2941 aggcagaaat actcctaatg tgcatctggc ccccgctgta gcccccactt ttccaggtga
3001 gcaacttctc ttcttcagat ccaccatgcc cggatgcagc gggtacccca acatggattt
3061 ggactgtctg ctcccccagg aatgggtgca gtacttctac caagaggcag ccccagcgca
3121 atctgatgtg gctctactaa gatttgtgaa tccagacaca ggtagggttt tgtttgaatg
3181 taagcttcat aaatcaggct atgttacagt ggctcacact ggccaacatg atttggttat
3241 cccccccaat ggttatttta ggtttgattc ctgggtcaac cagttttaca cgcttgcccc
3301 catgggaaat ggaacggggc gtagacgtgc actataatgg ctggagcttt ctttgctgga
3361 ttggcatctg atgtccttgg ctctggactt ggttccctta tcaatgctgg ggctggggcc
3421 atcaaccaaa aagttgagtt tgaaaataat agaaaattgc aacaagcatc cttccaattt
3481 agcagcaatc tacaacaggc ttcctttcaa catgacaaag agatgctcca agcacaaatt
3541 gaggccacca aaaggttaca acaggaaatg atgaaagtta agcaggcaat gctcctagag
3601 ggtgggttct ctgagacaga tgcagcccgc ggggcaatca acgcccccat gacaaaagct
3661 ttggactgga gcgggacaag gtactgggct cccgatgcta ggactacaac atacaatgca
3721 ggccgcttct ccacccctca accatcgggg acactgccag gaagagctaa tcttagggat
3781 gctgtccctg ctcggggttc ctccagtaag tct
//