Typing tool
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Typing tool
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Complete norovirus genomes
| KU678204 | GII.4 Yerseke | |
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| GII.P31 |
ORF1: 1..1734
ORF2: 1715..3337
ORF3: 3337..4143
LOCUS KU678204 4219 bp RNA linear VRL 01-MAR-2017
DEFINITION Norovirus 16-C-2/2016/GII.Pe/GII.4 Sydney_2012 polyprotein gene,
partial cds; and VP1 and VP2 genes, complete cds.
ACCESSION KU678204
VERSION KU678204.1
KEYWORDS .
SOURCE Norovirus 16-C-2/2016/GII.Pe/GII.4 Sydney_2012
ORGANISM Norovirus 16-C-2/2016/GII.Pe/GII.4 Sydney_2012
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 4219)
AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Liao,W.-T.
TITLE Norovirus GII.Pe/GII.4 Sydney_2012 gastroenteritis outbreaks
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4219)
AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Liao,W.-T.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2016) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..4219
/organism="Norovirus 16-C-2/2016/GII.Pe/GII.4 Sydney_2012"
/proviral
/mol_type="genomic RNA"
/isolate="16-C-2/2016/GII.Pe/GII.4 Sydney_2012"
/isolation_source="stool specimen from a 33-year female
with diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1961576"
/country="Taiwan"
/collection_date="Jan-2016"
/note="genotype: GII.4"
CDS <1..1734
/note="non-structure protein"
/codon_start=1
/product="polyprotein"
/protein_id="AQT25666.1"
/translation="GGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHT
AAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTTP
LPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVLEAAKKTIINV
LEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMF
EEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCARAFGGLMDELKAH
CVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAALEIMVKFSP
EPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLCALSEVT
DLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISE
DLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHSQRPIQLM
SLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNL
APSFVNEDGVE"
CDS 1715..3337
/note="major structure protein"
/codon_start=1
/product="VP1"
/protein_id="AQT25667.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRSNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 3337..4143
/note="minor structure protein"
/codon_start=1
/product="VP2"
/protein_id="AQT25668.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGPSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 ggagggcaaa tgggtatgct cctgacagga tccaacgcca agagtatgga cctaggcaca
61 acaccaggcg actgcggctg cccctacatc tacaagaggg ggaatgacta cgtggtcata
121 ggggtccaca cagccgctgc ccgtggagga aacactgtca tatgtgccac ccaggggagt
181 gagggagaag ccacacttga aggaggtgac agcaaaggga catactgtgg tgcaccaatc
241 ttgggcccag ggagcgctcc gaagctcagt accaagacta agttttggag atcatccacg
301 acaccactcc cacctggcac ctacgaacca gcctacctcg gtggcaaaga ccctagagtc
361 aaaggtggcc cttcattgca acaagttatg agggaccagc tgaagccatt cacagaaccc
421 agaggcaaac caccaagacc aaatgtgttg gaagctgcca agaagaccat catcaatgtc
481 ctcgagcaaa caattgatcc accccaaaag tggtcatttg cgcaagcttg cgcatccctt
541 gacaaaacca cctccagcgg ccacccgcac cacatgcgga aaaacgactg ttggaatggg
601 gagtccttca caggaaaatt ggctgatcaa gcctccaagg ccaacctaat gtttgaagag
661 ggaaagaaca tgactccagt ctacacaggt gcacttaaag atgagttggt gaagaccgat
721 aaagtttatg gtaaggtcaa gaagaggctt ctgtggggtt cagatctggc gaccatgata
781 cggtgcgccc gagcttttgg aggccttatg gatgaactca aggcacactg tgtcacactt
841 cctgtcagag ttggtatgaa catgaatgag gatggcccca tcatctttga gaagcactcc
901 agatatagat accactatga tgctgattat tcccggtggg actcaacaca acaaagggat
961 gtgctagcag cagcactaga aatcatggtt aagttctctc cagaaccaca cctggcccag
1021 atagttgcag aagacctcct ttcccctagc gtgatggatg taggtgactt tcaaatatca
1081 ataagtgaag gtctcccctc tggggtacct tgtacctccc agtggaattc catcgcccac
1141 tggctcctca ctctgtgcgc actctctgaa gtcacggacc tgtcccctga tatcattcag
1201 gccaactccc ttttctcctt ctatggtgat gatgagattg taagcacaga cataaaattg
1261 gacccagaga agctgacagc aaaactcaaa gagtacgggc tgaaaccaac ccgccccgac
1321 aaaactgaag gaccccttgt tatctctgaa gacctggatg gcctgacatt cctccggaga
1381 actgtgaccc gtgatccagc tggctggttt ggaaaattgg agcaaagttc aattctcagg
1441 caaatgtact ggaccagggg tcccaaccat gaagatccat ttgaaacaat gataccacac
1501 tcccaaagac ccatacaatt gatgtccttg ctgggcgagg ctgcactcca cggcccggca
1561 ttctatagca agattagcaa actagtcatt gcagagttga aggaaggtgg catggacttt
1621 tacgtaccca gacaagagcc aatgttcaga tggatgagat tctcagatct cagcacgtgg
1681 gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga gtgacgccaa
1741 cccatctgat gggtccgcag ccaacctcgt cccagaggtc aacaatgagg ttatggcttt
1801 ggagcccgtt gttggtgccg ctattgcggc acctgtagcg ggccaacaaa atgtaattga
1861 cccctggatt agaagtaatt ttgtacaagc ccctggtgga gagtttacag tttcccctag
1921 aaacgctcca ggtgaaatac tatggagcgc gcccttgggc cctgatctaa atccctacct
1981 atcccatttg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc aggtaattct
2041 cgcggggaac gcgttcaccg ccgggaaggt catatttgca gcagtcccac caaattttcc
2101 aactgaaggc ttgagcccca gccaggtcac tatgttcccc catatagtag tagatgttag
2161 gcaattagaa cctgtgttga ttcccttacc cgatgttagg aataatttct atcattacaa
2221 tcaatcaaat gaccccacca ttaagttgat agcaatgttg tatacaccac ttagggctaa
2281 taatgctggg gatgatgtat tcacagtttc ttgccgagtt ctcacgagac catcccccga
2341 ttttgatttc atatttctag tgccacccac agttgagtca agaactaaac cattctctgt
2401 cccagtttta actgttgagg agatgaccaa ttcaagattc cccattcctt tggagaagtt
2461 gttcacgggt cccagcagtg cctttgttgt ccaaccacaa aacggtaggt gcacgactga
2521 tggcgtgctc ctaggcacca cccaactgtc tcctgtcaac atctgcacct tcagaggaga
2581 tgtcacccat atcacaggta gtcgtaacta cacaatgaat ttggcttctc aaaattggag
2641 caattatgac ccaacagaag aaatcccagc ccctctagga actccagatt ttgtggggaa
2701 gattcaaggc atgctcaccc aaaccacaag gacagatggc tcaacacgcg gccacaaagc
2761 cacagtgtac actgggagcg ccgactttgc tccaaaactg ggtagagttc aatttgaaac
2821 tgacacagac catgattttg aagctaacca aaacacaaag ttcaccccag ttggtgtcat
2881 ccaagatggt agcaccaccc accgaaatga accccaacag tgggtgctcc caagttactc
2941 aggcagaaac actcctaatg tgcacctggc ccccgctgta gcccccactt ttccgggtga
3001 gcaacttctc ttcttcagat ccaccatgcc cggatgcagc gggtacccca acatggattt
3061 ggactgcctg ctcccccagg aatgggtgca gtacttctac caagaggcag ccccagcaca
3121 atctgacgtg gctctgttaa gatttgtgaa tccagacaca ggtagggttt tgtttgagtg
3181 taagcttcat aaatcaggct atgttacagt ggctcacact ggccaacatg atttggttat
3241 cccccccaat ggttatttta ggtttgattc ctgggtcaac cagttttaca cgcttgcccc
3301 catgggaaat ggaacggggc gcagacgtgc attataatgg ctggagcttt ctttgctgga
3361 ttggcatctg atgtccttgg ctctggactt ggttccctta tcaatgctgg ggctggggcc
3421 atcaaccaaa aagttgagtt tgaaaataac agaaaattgc aacaagcatc cttccaattt
3481 agcagcaatt tacaacaggc ttcctttcaa catgacaaag agatgctcca agcacaaatt
3541 gaggccacca aaaggctaca acaggaaatg atgaaagtta agcaggcaat gctcctagag
3601 ggtgggttct ctgagacaga tgcggcccgc ggggcaatca acgcccccat gacaaaagct
3661 ttggactgga gcgggacaag gtactgggct cccgatgcta ggactacaac atacaatgca
3721 ggccgctttt ccacccctca accatcgggg gcactgccag gaagagctaa tcttagggat
3781 gctgtccctg ctcggggtcc ctccagtaag tcttctaatt cttccactgc tacttctgtg
3841 tactcaaatc aaaccacttc aacgagactt ggttctacag ctggttctgg taccagtgtc
3901 tcgagcttcc cgtcaactgc aaggaccagg agctgggttg aggatcaaag taggaatttg
3961 tcacctttca tgaggggggc ccacaacata tcgtttgtca ccccaccatc tagcagatcc
4021 tctagccaag gcacagtctc aaccgtgcct aaagagattt tggactcctg gactggcgct
4081 ttcaacacgc gcaggcagcc actcttcgct cacattcgta agcgagggga gtcacgggtg
4141 taatgtgaaa aggcaaaatt gactatcttt cttttcttta gtgtctttta aaaaaaaaaa
4201 aaaaaaaaaa aaaaaaaaa
//