Typing tool
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Typing tool
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Complete norovirus genomes
| KU678203 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..1725
ORF2: 1706..3328
ORF3: 3328..4134
LOCUS KU678203 4238 bp RNA linear VRL 01-MAR-2017
DEFINITION Norovirus 15-JO-2/2016/GII.Pe/GII.4 Sydney_2012 polyprotein gene,
partial cds; and VP1 and VP2 genes, complete cds.
ACCESSION KU678203
VERSION KU678203.1
KEYWORDS .
SOURCE Norovirus 15-JO-2/2016/GII.Pe/GII.4 Sydney_2012
ORGANISM Norovirus 15-JO-2/2016/GII.Pe/GII.4 Sydney_2012
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 4238)
AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Liao,W.-T.
TITLE Norovirus GII.Pe/GII.4 Sydney_2012 gastroenteritis outbreaks
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4238)
AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Liao,W.-T.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2016) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..4238
/organism="Norovirus 15-JO-2/2016/GII.Pe/GII.4
Sydney_2012"
/proviral
/mol_type="genomic RNA"
/isolate="15-JO-2/2016/GII.Pe/GII.4 Sydney_2012"
/isolation_source="stool specimen from a 10-year male with
diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1961575"
/country="Taiwan"
/collection_date="Jan-2016"
/note="genotype: GII.4"
CDS <1..1725
/note="non-structure protein"
/codon_start=1
/product="polyprotein"
/protein_id="AQT25663.1"
/translation="MGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAA
RGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTTPLPP
GTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVLEAAKKTIINVLEQ
TIDPPQKWSFAQACASLDKTTSSGHPHHTRKNDCWNGESFTGKLADQASKANLMFEEG
KNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCARAFGGLMDELKAHCVT
LPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAALEIMVKFSPEPH
LAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLS
PDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLD
GLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHSQRPIQLMSLL
GEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPS
FVNEDGVE"
CDS 1706..3328
/note="major structure protein"
/codon_start=1
/product="VP1"
/protein_id="AQT25664.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 3328..4134
/note="minor structure protein"
/codon_start=1
/product="VP2"
/protein_id="AQT25665.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGTLPGRANLRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGASVSSFPSTARTRSWVEDQSRNFSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 atgggtatgc tcctgacagg atccaacgcc aagagtatgg acctaggcac aacaccaggc
61 gactgcggct gcccctacat ctacaagagg gggaatgact acgtggtcat aggagtccat
121 acggccgctg cccgtggagg aaacactgtc atatgtgcca cccagggaag tgagggagag
181 gccacacttg aaggaggtga cagtaaaggg acatactgtg gcgcaccaat cttgggccca
241 gggagcgctc cgaagctcag taccaagact aagttttgga gatcatccac aacaccactc
301 ccacctggca cctacgaacc agcctacctc ggtggcaaag accctagagt caaaggtggc
361 ccttcattgc aacaagttat gagggaccag ctgaagccat tcacagaacc cagaggcaaa
421 ccaccaagac caaatgtgtt ggaagctgcc aagaaaacca tcatcaatgt ccttgaacaa
481 acaattgatc caccccaaaa atggtcattt gcgcaagctt gcgcatccct tgacaaaacc
541 acctccagcg gccacccgca ccacacgcgg aaaaacgact gttggaatgg ggagtccttc
601 acaggaaaat tggctgatca agcctccaag gccaacctga tgtttgaaga gggaaagaac
661 atgactccag tctacacagg tgcacttaaa gatgagttgg taaagaccga taaagtttat
721 ggtaaggtca agaagaggct tctgtggggt tcagatctgg cgaccatgat acggtgcgcc
781 cgagcttttg gaggccttat ggatgaactc aaggcacact gtgtcacact ccctgtcaga
841 gttggtatga acatgaatga ggatggcccc atcatcttcg agaagcactc cagatataga
901 tatcactatg atgctgacta ttcccggtgg gactcaacac aacaaaggga tgtgctagca
961 gcagcactag aaatcatggt taagttctct ccagaaccac acctggccca gatagttgca
1021 gaagacctcc tctcccctag cgtgatggat gtaggtgact ttcaaatatc aataagtgag
1081 ggtctcccct ctggggtacc ttgtacctcc cagtggaatt ccatcgccca ctggctcctc
1141 actctgtgtg cactctctga agtcacggac ctgtcccctg atatcattca ggccaactct
1201 cttttctcct tctatggtga tgatgagatt gtaagcacag acataaagtt ggacccagag
1261 aagctgacag caaaactcaa ggagtacggg ctgaaaccaa cccgccccga caaaactgaa
1321 ggaccccttg ttatctctga agacctggat ggtctgacat tcctccggag aactgtgacc
1381 cgtgatccag ctggctggtt tggaaaattg gaacaaagtt caattcttag gcaaatgtac
1441 tggaccaggg gtcccaacca tgaagatcca tttgaaacaa tgataccaca ctcccaaaga
1501 cccatacaat tgatgtcctt gctgggcgag gctgcactcc acggcccggc attctacagc
1561 aaaattagca aattagtcat tgcagagttg aaggaaggtg gcatggattt ttacgtgccc
1621 agacaagaac caatgttcag atggatgaga ttctcagatc tgagcacgtg ggagggcgat
1681 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg agtgacgcca acccatctga
1741 tgggtccgca gccaacctcg tcccagaggt caacaatgag gttatggctc tggagcccgt
1801 tgttggtgcc gccattgcgg cacctgtagc gggccaacaa aatgtaattg acccctggat
1861 tagaaacaat tttgtacaag cccctggtgg agagtttaca gtatccccta gaaacgctcc
1921 aggtgaaata ctatggagcg cgcccttggg ccctgatcta aatccctacc tatcccattt
1981 ggccagaatg tacaatggtt atgcaggtgg ttttgaagtg caggtaattc tcgcggggaa
2041 cgcgttcacc gccgggaagg tcatatttgc agcagtccca ccaaattttc caactgaagg
2101 cttgagcccc agccaggtca ctatgttccc ccacatagta gtagatgtta ggcaattaga
2161 acctgtgttg attcccttac ccgatgttag gaataatttc tatcattaca atcaatcaaa
2221 tgaccccacc attaagttga tagcaatgtt gtatacacca cttagagcta ataatgctgg
2281 ggatgatgtc ttcacagttt cttgccgagt tctcacgaga ccatcccccg attttgactt
2341 catatttcta gtgccaccca cagttgagtc aagaactaaa ccattctctg tcccagtttt
2401 aactgttgag gagatgacca attcaagatt ccccattcct ttggaaaagt tgttcacggg
2461 tcccagcagt gcctttgttg tccaaccaca aaacggtagg tgcacgactg atggcgtgct
2521 cctaggcacc acccaactgt ctcctgtcaa catctgcacc ttcagaggag atgtcaccca
2581 tatcacaggt agtcataact acacaatgaa tttggcttct caaaattgga gcaattacga
2641 cccaacagaa gaaatcccag cccctctagg aactccagac tttgtgggga agattcaagg
2701 cgtgcttacc caaaccacaa ggacagatgg ctcaacacgc ggccacaaag ccacagtgta
2761 cactgggagc gccgactttg ctccaaaact gggtagagtt caatttgaaa ctgacacaaa
2821 ccatgatttt gaagctaacc aaaacacaaa gttcacccca gttggtgtca tccaagatgg
2881 tggcaccacc caccggaatg aaccccaaca gtgggtgctc ccaagttact caggcagaaa
2941 tactcctaat gtgcatctgg cccccgctgt agcccccact tttccaggtg agcaacttct
3001 cttcttcaga tccaccatgc ccggatgcag cgggtacccc aacatggatt tggactgtct
3061 gctcccccag gaatgggtgc agtactttta ccaagaggca gccccagcac aatctgatgt
3121 ggctctacta agatttgtga atccagacac aggtagggtt ttgtttgaat gtaagcttca
3181 taaatcaggc tatgttacag tggctcacac tggccaacat gatttggtta tcccccccaa
3241 tggttatttt aggtttgatt cctgggtcaa ccagttttac acgcttgccc ccatgggaaa
3301 tggaacgggg cgtagacgtg cactataatg gctggagctt tctttgctgg attggcatct
3361 gatgtccttg gctctggact tggttccctt atcaatgctg gggctggggc catcaaccaa
3421 aaagttgagt ttgaaaataa cagaaaattg caacaagcat ccttccaatt tagcagcaat
3481 ctacaacagg cttcctttca acatgacaaa gagatgctcc aagcacaaat tgaggccacc
3541 aaaaggttac aacaggaaat gatgaaagtt aagcaggcaa tgctcctaga gggtgggttc
3601 tctgagacag atgcagcccg cggggcaatc aacgccccca tgacaaaagc tttggactgg
3661 agcgggacaa ggtactgggc tcccgatgct aggactacaa catacaatgc aggccgcttt
3721 tccacccctc aaccatcggg gacactgcca ggaagagcta atcttaggga tgctgtccct
3781 gctcggggtt cctccagtaa gtcttctaat tcttctactg ccacttctgt gtactcaaat
3841 caaactactt caacgagact tggttctaca gctggttctg gtgccagtgt ctcgagcttc
3901 ccgtcaactg caaggactag gagctgggtt gaggatcaaa gtaggaattt ttcacctttc
3961 atgagggggg cccacaacat atcgtttgtc accccaccat ctagcagatc ctctagccaa
4021 ggcacagtct caaccgtgcc taaagagatt ttggactcct ggactggcgc tttcaacacg
4081 cgcaggcagc cactcttcgc tcacattcgt aagcgagggg agtcacgggc gtaatgtgaa
4141 aagacaaaat tgattatctt tcttttcttt agtgtctttt aaaaaaaaaa aaaaaaaaaa
4201 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//