Typing tool
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Typing tool
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Complete norovirus genomes
| KU678201 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..1734
ORF2: 1715..3337
ORF3: 3337..4143
LOCUS KU678201 4283 bp RNA linear VRL 01-MAR-2017
DEFINITION Norovirus 15-IB-2/2015/GII.Pe/GII.4 Sydney_2012 polyprotein gene,
partial cds; and VP1 and VP2 genes, complete cds.
ACCESSION KU678201
VERSION KU678201.1
KEYWORDS .
SOURCE Norovirus 15-IB-2/2015/GII.Pe/GII.4 Sydney_2012
ORGANISM Norovirus 15-IB-2/2015/GII.Pe/GII.4 Sydney_2012
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 4283)
AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Liao,W.-T.
TITLE Norovirus GII.Pe/GII.4 Sydney_2012 gastroenteritis outbreaks
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4283)
AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Liao,W.-T.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2016) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..4283
/organism="Norovirus 15-IB-2/2015/GII.Pe/GII.4
Sydney_2012"
/proviral
/mol_type="genomic RNA"
/isolate="15-IB-2/2015/GII.Pe/GII.4 Sydney_2012"
/isolation_source="stool specimen from a 25-year female
with diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1961573"
/country="Taiwan"
/collection_date="Nov-2015"
/note="genotype: GII.4"
CDS <1..1734
/note="non-structure protein"
/codon_start=1
/product="polyprotein"
/protein_id="AQT25658.1"
/translation="GGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHT
AAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTTP
LPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVLEAAKKTIINV
LEQTIDPPQKWSFAQACTSLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMF
EEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCARAFGGLMDELKAH
CVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAALEIMVKFSP
EPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLCALSEVT
DLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISE
DLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHSQRPIQLM
SLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNL
APSFVNEDGVE"
CDS 1715..3337
/note="major structure protein"
/codon_start=1
/product="VP1"
/protein_id="AQT25659.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
CDS 3337..4143
/note="minor structure protein"
/codon_start=1
/product="VP2"
/protein_id="AQT25660.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS
NSSTATSVYSNQTISTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRSLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 ggagggcaaa tgggtatgct cctgacagga tccaacgcca agagtatgga cctaggcaca
61 acaccaggcg actgcggctg cccctacatc tacaagaggg ggaatgacta cgtggtcata
121 ggggtccata cggccgctgc ccgtggagga aacactgtca tatgtgccac ccagggaagt
181 gagggagagg ccacacttga aggaggtgac agtaaaggga catactgtgg cgcgccaatc
241 ttgggcccag ggagcgctcc gaagctcagc accaagacta agttttggag atcatccaca
301 acaccactcc cacctggcac ctacgaacca gcctacctcg gtggcaaaga ccctagagtc
361 aaaggtggcc cttcattgca acaagttatg agggaccagc tgaagccatt cacagaaccc
421 agaggcaaac caccaagacc aaatgtgttg gaagctgcca agaaaaccat catcaatgtc
481 cttgagcaaa caattgatcc accccaaaaa tggtcatttg cgcaagcttg cacatccctt
541 gacaaaacca cctccagcgg ccacccgcac cacatgcgga aaaacgactg ttggaatggg
601 gagtccttca caggaaaatt ggctgaccaa gcctccaagg ccaacctaat gtttgaagag
661 ggaaagaaca tgactccagt ctacacaggt gcacttaaag atgagttggt aaagaccgat
721 aaagtttatg gtaaggtcaa gaagaggctt ctgtggggtt cagatctggc gaccatgata
781 cggtgcgccc gagcttttgg aggcctcatg gatgaactca aggcacactg tgtcacactc
841 cctgtcagag ttggtatgaa catgaatgag gatggcccca tcatcttcga gaagcactcc
901 agatatagat atcactatga tgctgactat tcccggtggg actcaacaca acaaagggat
961 gtgctagcag cagcactaga aatcatggtt aagttctctc cagaaccaca cctggcccag
1021 atagttgcag aagacctcct ctcccctagc gtgatggatg tgggtgactt tcaaatatca
1081 ataagtgagg gtctcccctc tggggtgcct tgtacctccc agtggaattc catcgcccac
1141 tggctcctca ctctgtgtgc actctctgaa gtcacggacc tgtcccctga tatcattcag
1201 gccaactccc ttttctcctt ctatggtgat gatgagattg taagcacaga cataaagttg
1261 gacccagaga agctgacagc aaaactcaag gagtacgggc tgaaaccaac ccgccccgac
1321 aaaactgaag gaccccttgt tatctctgaa gacctggatg gtctgacatt cctccggaga
1381 actgtgaccc gtgatccagc tggctggttt ggaaaattgg aacaaagttc aattcttagg
1441 caaatgtact ggaccagggg tcccaaccat gaagatccat ttgaaacaat gataccacac
1501 tcccaaagac ccatacaatt gatgtccttg ctgggcgagg ctgcactcca cggcccggca
1561 ttctacagca aaattagcaa attagtcatt gcagagttga aggaaggtgg catggatttt
1621 tacgtaccca gacaagagcc aatgttcaga tggatgaggt tctcagatct gagcacgtgg
1681 gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga gtgacgccaa
1741 cccatctgat gggtccgcag ccaacctcgt cccagaggtc aacaatgagg ttatggctct
1801 ggagcccgtt gttggtgccg ccattgcggc acctgtagcg ggccaacaaa atgtaattga
1861 cccctggatt agaaacaatt ttgtacaagc ccctggtgga gagtttacag tatcccctag
1921 aaacgctcca ggtgaaatac tatggagcgc gcccttgggc cctgatctaa atccctactt
1981 atctcatttg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc aggtaattct
2041 cgcggggaac gcgttcaccg ccgggaaggt catatttgca gcagtcccac caaattttcc
2101 aactgaaggc ttgagcccca gccaggttac tatgttcccc catatagtag tagatgttag
2161 gcaactagaa cctgtgttga ttcccttacc cgatgttagg aataatttct accattacaa
2221 tcaatcaaat gaccccacca ttaagttgat agcaatgttg tatacaccac ttagggctaa
2281 taatgctggg gatgatgtct tcacagtttc ttgccgagtt ctcacgagac cgtcccccga
2341 ttttgacttc atatttctag tgccacccac agttgagtca agaactaaac cattctctgt
2401 cccagtttta actgttgagg agatgaccaa ttcaagattc cccattcctt tggaaaagtt
2461 gttcacgggt cccagcagtg cctttgttgt ccaaccacaa aacggtaggt gcacgactga
2521 tggcgtgctc ctaggcacca cccaactgtc tcctgtcaac atctgcacct tcagaggaga
2581 tgtcacccat atcacaggta gtcataacta cacaatgaat ttggcttctc aaaattggag
2641 caattacgac ccaacagaag aaatcccagc ccctctaggg actccagact ttgtggggaa
2701 gattcaaggc atgcttaccc aaaccacaag gacagatggc tcaacacgcg gccacaaagc
2761 cacagtgtac actgggagcg ccgactttgc tccaaaactg ggtagagttc aatttgaaac
2821 tgacacaaac aatgattttg aagctaacca aaacacaaag ttcaccccag ttggtgtcat
2881 ccaagatggt ggcaccaccc accgaaatga accccaacag tgggtgctcc caagttactc
2941 aggcaggaac actcctaatg tgcatctggc ccccgctgta gcccccactt ttccgggtga
3001 gcaactcctc ttcttcagat ccaccatgcc cggatgcagc gggtacccca acatggattt
3061 ggattgtctg ctcccccagg aatgggtgca gtacttctac caagaggcag ccccagcaca
3121 atctgatgtg gctctgctaa gatttgtgaa tccagacaca ggtagggttt tgtttgaatg
3181 taagcttcat aaatcaggct atgttacagt ggctcacact ggccaacatg atttggttat
3241 cccccccaat ggttatttta ggtttgattc ctgggtcaac cagttttaca cgcttgcccc
3301 catgggaaat ggagcggggc gtagacgtgc actataatgg ctggagcttt ctttgctgga
3361 ttggcatctg atgtccttgg ctctggactt ggttccctta tcaatgctgg ggctggggcc
3421 atcaaccaaa aagttgagtt tgaaaataac agaaaattgc aacaagcatc cttccaattt
3481 agcagcaatc tacaacaggc ttcctttcaa catgacaaag agatgctcca agcacaaatt
3541 gaggctacca aaaggttaca acaggaaatg atgaaagtta agcaggcaat gctcctagag
3601 ggtgggttct ctgagacaga tgcagcccgc ggggcaatca acgcccctat gacaaaagct
3661 ttggactgga gcgggacaag gtactgggct cctgatgcta ggactacaac atacaatgca
3721 ggccgctttt ccacccccca accatcgggg gcgctgccag gaagagctaa tcttagggat
3781 gctgtccctg ctcggggttc ctctagtaag tcttctaatt cttctactgc tacttctgtg
3841 tactcaaatc aaactatttc aacgagactt ggttctacag ctggttctgg taccagtgtc
3901 tcgagcttcc cgtcaactgc aaggactagg agctgggttg aggatcaaag taggagcttg
3961 tcacctttca tgaggggggc ccacaacata tcgtttgtca ccccaccatc tagcagatcc
4021 tctagccaag gcacagtctc aaccgtgcct aaagagattt tggactcctg gactggcgct
4081 ttcaacacgc gcaggcagcc actcttcgct cacattcgta agcgagggga gtcacgggtg
4141 taatgtgaaa agacaaaatt gattatcttt cttttcttta gtgtctttta aaaaaaaaaa
4201 aaaaaaaaaa ccaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
4261 aaaaaaaaaa aaaaaaaaaa aaa
//