Typing tool
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Typing tool
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Complete norovirus genomes
| KU561251 | GII.17 | |
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| GII.P17 |
ORF1: 5..5113
ORF2: 5094..6710
ORF3: 6710..7489
LOCUS KU561251 7551 bp RNA linear VRL 10-MAY-2016
DEFINITION Norovirus GII.17 strain Hu/GII.P17_GII.17/KR/2013/CAU-85, complete
genome.
ACCESSION KU561251
VERSION KU561251.1
KEYWORDS .
SOURCE Norovirus GII.17
ORGANISM Norovirus GII.17
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7551)
AUTHORS Dang Thanh,H., Than,V.T., Nguyen,T.H., Lim,I. and Kim,W.
TITLE Emergence of Norovirus GII.17 Variants among Children with Acute
Gastroenteritis in South Korea
JOURNAL PLoS ONE 11 (5), E0154284 (2016)
PUBMED 27148739
REFERENCE 2 (bases 1 to 7551)
AUTHORS Hien,D.T. and Kim,W.
TITLE Direct Submission
JOURNAL Submitted (20-JAN-2016) Medical Microbiology, Chung-Ang University.
College of Medicine, 221 Heukseok-dong, Dongjak-ku, Seoul, South
Korea
FEATURES Location/Qualifiers
source 1..7551
/organism="Norovirus GII.17"
/mol_type="genomic RNA"
/strain="Hu/GII.P17_GII.17/KR/2013/CAU-85"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:552592"
/geo_loc_name="South Korea"
/collection_date="2013"
gene 1..5113
/gene="ORF1"
CDS 5..5113
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="ANC98486.1"
/translation="MKMASNDASAAVAGKNNNNDKEKSSSDSLFSNMTVTFKKALGAR
PKQPPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPKIVYKVGEGVSGLPNLTTVA
QPDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPA
AISLAKIELTPLSLYWRVVYTPQYLIAPETLKNLSGETFPYTAFDNNCYAFCCWVLDL
NDSWLSRRMIQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDI
IGKLRPLNILNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAMIAPLLGDYEMQG
PEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKW
FFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARK
LSTKSASPDIVGTINSLLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLA
RELAKKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELA
DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPD
IEKAKRDFPGQPDMWKDHYRPDFTHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLI
ARASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSV
KTLDELKQAIKNISIKKCQIVYNGCTYTMESDGRSKVVVEKVQNATVQTNNELVGALH
HLRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDK
GGCPKPRDEDDLTVDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE
RNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATL
GLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYHERIDFEAPPSVWSRIVNFGTGWGFW
VSPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGA
PEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTT
PGDCGCPYIYKRGNDFVAIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAP
ILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPF
TEPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKN
DYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWG
SDLSTMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYS
RWDSTQQRAVLEVALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGV
PCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTA
KLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWT
RGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVP
RQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5094..6710
/gene="ORF2"
CDS 5094..6710
/gene="ORF2"
/codon_start=1
/product="capsid protein VP1"
/protein_id="ANC98485.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAHNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDHRDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGV
ASQRNVGNDAPGSTRAHEAVISTYSPQFVPKLGSVNFRSNDNDFQLQPTKFTPVGIND
DGDHPFRQWELPDYSGLLTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIVDCL
IPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRTAQ"
gene 6710..7489
/gene="ORF3"
CDS 6710..7489
/gene="ORF3"
/codon_start=1
/product="capsid protein VP2"
/protein_id="ANC98487.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAHVKATKQLQSEMIALKQDVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSLAPSSSSSSVYSMSTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgtt gctggcaaaa acaacaacaa
61 cgacaaggag aaatcttcaa gtgacagctt gttttctaac atgactgtta cttttaagaa
121 agccctcggg gcgcggccta aacaaccgcc cccgggagaa acaaaacaaa tacaaaaacc
181 accaaggcca ccgacaccgg aattggtgaa gagaataccc ccacccccac ccaatggcga
241 ggatgaacca aagatagtgt ataaggtggg agagggtgtg tctgggctgc ccaacctaac
301 aactgtggca cagcctgacg cacaaaacac agcttatagt gttcccccac ttagccagag
361 agaagtcggc gaagctaaag aaccgctgcc tggctccatt ctggaaatgt gggatggtga
421 gatctaccac tatgggctgt atgttgagcg ggggcatgta ctcggagtac acaaaccacc
481 tgccgcaata agccttgcca aaattgaatt aacaccgctg tctctctact ggagagtggt
541 ctacactccc cagtatttga tagctccaga aactcttaag aacttgagtg gagagacttt
601 cccatacacg gcctttgaca acaactgtta tgccttctgt tgttgggtcc tagacctcaa
661 cgactcctgg cttagcagga gaatgatcca aagaacaact ggattcttca gaccgtatca
721 ggattggaac agaaaaccct taccaaccat ggatgaaccg aaaatcaaga aggccgcgaa
781 tgctgttctg tgcgctctct cctcactctt cactagaccc attaaggaca tcattggaaa
841 gcttagacca ctgaacattc ttaatatact ggcaacttgt gactggactt ttgcaggcat
901 agtggaatcc atgatccttc ttgctgaact ctttggggtg ttctggaccc ccccagatgt
961 gtctgcgatg attgctccct tactcggtga ctacgagatg caaggccccg aagacctggc
1021 cgtggaactt gtgcccgtgg taatgggagg aataggtttg gtgttaggat tcaccaagga
1081 aaagatcggc aagatgcttt catcagctgc gaccacactt agggcctgca aggatctagg
1141 atcttatgga ttggagatac tcaaattggt catgaagtgg ttcttcccca agaaggagga
1201 ggctaacgaa ctagccatgg tgagggccat tgaggatgca gtcctggatt tggaggcaat
1261 agaaaacaat cacatgacca cccttctcaa ggataaagac agcctggcca catacatgag
1321 gactcttgac ttggaagaag agaaagcaag gaaactgtca accaaatcgg cgtcacctga
1381 catcgtgggt acaataaact cattattggc aaggatagca gccgccaggt cactggtcca
1441 caaggctaag gaggagctct cgagcagaca gagacctgtt gttgtaatga tatcaggtag
1501 accaggtata ggaaagaccc atctggccag agagctagcc aagaaagttg cgtcaacact
1561 gtcaggcgac caaaggattg gactgatacc tagaaatggc gtcgaccatt gggacgccta
1621 caagggagaa agggtggttc tgtgggatga ttatggtatg agcaacccta tacaggacgc
1681 actgaggctc caagaattgg ctgacacctg tcctctgacc ctgaattgtg acaggattga
1741 aaacaaaggg aaagtgttcg acagtgatgc cataattata acaaccaacc ttgcaaaccc
1801 agcaccacta gactatgtca actttgaggc ctgctctaga cgcatagact tcttggtgta
1861 tgcagacgca cctgacatcg agaaggctaa gcgtgatttc cctggccaac cagatatgtg
1921 gaaagaccat tacagaccag acttcacaca cattaaactt cagctggcac cacagggagg
1981 ttttgacaaa aatggcaaca ccccacatgg caaaggtgtg gtgaagtctc tgacgattgg
2041 ttctctgatc gccagggctt ctggcttgct ccacgagaga atggatgaat tcgagctcca
2101 gggctctgac ctgccaacct tcaattttga ccgcaacaaa gtcgccgcct tcagacaatt
2161 agcagctgaa aacaaatatg gtcttatgga cacactgagg gtcggcaacc aactgaaaag
2221 tgtcaagacc ctggatgagc tgaaacaggc cataaagaac atcagtatca agaagtgcca
2281 gatagtgtat aatggatgca cctataccat ggaatctgat gggaggagca aggttgtggt
2341 tgaaaaggta caaaacgcaa cagttcaaac caacaatgaa cttgtagggg cactccacca
2401 cctgagatct gcaaggataa gatactatgt taaatgtttc caagaagcca tttactctct
2461 actccaaatt gctggtgcag ccttcgtcac ctcacgcatc gtgaggcgca tgaacatctc
2521 aaacctctgg tcgaagccac ccatcgagga gggtgatgag cctgaagaca aaggaggatg
2581 ccccaagccc agggatgaag atgacctcac tgttgactct agagacatta aagtggaagg
2641 gaagaagggc aagaacaagt ctggtcgggg caagaaacac acagccttct catccaaggg
2701 cctcagtgat gaagagtacg atgagtacaa gagaatcaga gaggagagga atggcaaata
2761 ctcaatagag gaatacctcc aagataggga cagatactat gaagagcttg ccattgctaa
2821 ggccactgag gaggacttct gtgaagagga ggagatcaaa atccgccaga gaatcttccg
2881 acccaccagg aagcagcgga aagaggaaag ggccacgctt gggcttgtca caggatcgga
2941 aatcagaaag aggaatccag atgactttaa accaaaagga aaattgtggg ctgatgacaa
3001 caggagcgtg gattaccatg agaggataga ttttgaggct cccccgagtg tttggtctag
3061 gatagtcaac tttggcacag gctggggatt ctgggtttct ccaagtctct ttataacttc
3121 aacacacgtc ataccaaaag gaatcactga ggcctttgga gtacccataa accaaatcca
3181 aattcacaaa tctggagaat tttgccgctt gcggtttcca aagccaatca gaccagacgt
3241 gagtgggatg atcttggaag agggtgcccc tgaaggcact gttgtgtcta ttctcatcaa
3301 aaggacaaca ggggagctga tgcctcttgc agtcagaatg gggactcatg ccacaatgaa
3361 aatccaaggt agaacggtgg gtggtcagat gggtatgctt ctcactggct caaatgctaa
3421 aagcatggat ctaggtacaa cgccaggtga ctgcgggtgt ccatacatat acaaaagggg
3481 caatgacttc gtggccattg gggtgcacac tgcagcagca cgtggaggca acacggtcat
3541 atgtgccaca cagggaagtg aaggtgaagc cactcttgaa ggaggtgaca acaagggtac
3601 ctattgtgga gcccccattt tgggacctgg caatgcacca aaattgagca caaaaacaaa
3661 attctggaga tcctctaacg caccgcttcc cccaggtact tatgaaccag cataccttgg
3721 tgggagagac ccgcgcgtga agggaggccc atctctgcaa caagttatga gagaccaact
3781 taaacctttt acagagccca gagggaagcc accaaaccca aatgtcctag agtcagcaaa
3841 gaagactatc atcaatgttc tggagcaaac cattgacccc cctcaaaagt ggtcatatgc
3901 ccaagcttgt gcatccctcg acaagacaac ctccagtgga tacccgcacc acgtccggaa
3961 gaatgactat tggagtggtg aatccttcac agggaaactt gcagaccagg cttcaaaagc
4021 aaatctcatg tatgaggaag gcaagcacat gcaaccagtt tacaccgcag cactcaaaga
4081 cgagctcgtg aaaactgaca aaatttatgg caagatcaag aaaagactcc tgtggggttc
4141 tgacctctcc accatgattc gatgcgccag agcatttggt ggtctcatgg atgagctcaa
4201 agcaaattgt attacactcc ctatcagagt tggtatgaat atgaatgaag acggtcccat
4261 aatatttgag aaacactcca ggtacaggta ccactatgat gctgattact cccgctggga
4321 ctccacacaa cagcgggcag tgctggaagt ggcacttgaa atcatggtga gattttctgc
4381 tgagccacag ctggcacaaa tagtggcaga ggacctgctg tcaccaagtg tggttgatgt
4441 gggcgatttc aaaatcgcta tcaatgaagg cctaccatct ggcgtgcctt gcacctcaca
4501 atggaattct attgcccatt ggttactcac cctgtgtgcc ctttctgaag tgacaggact
4561 aggtcctgac atcatacaag ccaactccat gtactctttc tatggtgatg atgagattgt
4621 gagcacagac ataaaattgg acccagagaa attgaccgca aagctcaaag aatatggcct
4681 taaacccact cggcccgaca aaactgaggg gccgctggtg attagtgaag acctgaatgg
4741 gttgactttc ctccgccgaa cagtcacccg tgatccagca ggttggtttg gaaagttgga
4801 ccaaaactcc atcctcaggc agttgtactg gacaagagga cccaaccatg aagaccccag
4861 tgagaccatg ataccacacg cacagagacc tgtgcagctc atggcactac taggagaatc
4921 ctccctacat ggaccctcat tttacagcaa ggttagcaaa ctggtcatat ctgaacttaa
4981 agagggagga atggattttt atgtgcccag acaagagtca atgttcagat ggatgaggtt
5041 ctcagatcta agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga
5101 tggcgtcgaa tgacgccgct ccatctaatg atggtgctgc tggtctcgta ccagagggca
5161 acaacgagac ccttccccta gaaccagttg cgggcgcagc tatagccgca cccgtcactg
5221 gccaaaacaa cataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatgggg
5281 agttcacagt gtcacccaga aactcccctg gagaaatttt actaaaccta gagttgggcc
5341 ctgatttgaa cccttatttg gctcatttgt caaggatgta caatgggtat gctggtggag
5401 tggaagttca ggttctcctg gcagggaacg cgttcactgc cggaaagatc ctcttcgccg
5461 ccgtcccgcc aaatttccca gtggaattct taagcccagc ccagattaca atgctcccac
5521 atttaatagt agatgtcagg actcttgaac caattatgat cccactccct gatgttagga
5581 atacattctt ccattataac aaccagccta acagccgcat gagattagtg gctatgctct
5641 acacccccct tagatctaat ggctcaggtg atgatgtctt tactgtctct tgcagggttt
5701 tgactaggcc tactcctgat tttgagttca cttatttagt gccaccttct gttgaatcta
5761 agactaagcc tttttcctta cctattttaa ccctttctga gctcacaaat tcgaggttcc
5821 cagtccccat cgattcgctt ttcaccgccc acaataatgt gttgcaggtg cagtgtcaaa
5881 acggcaggtg cacacttgat ggtgagttac aaggcacaac ccagttgctc ccatctggca
5941 tctgtgcatt cagaggacgg gtgacagcag aaactgacca tcgagacaag tggcacatgc
6001 aactgcaaaa cctcaatggc acaacatatg acccaactga tgatgtgcca gccccgctgg
6061 gtacacctga cttcaagggc gtcgtgtttg gggtagcaag ccaaagaaat gtgggtaatg
6121 atgcgcctgg ctcaaccagg gcccatgagg cggtgatttc aacctatagc ccccaatttg
6181 tccctaaatt aggttctgtc aattttagaa gtaatgataa tgatttccaa ttgcagccga
6241 caaaattcac accagtgggc atcaatgacg atggtgacca cccgttcaga cagtgggaac
6301 taccagacta ttcagggctg cttaccttga atatgaacct cgcccccccg gttgctccaa
6361 atttccctgg tgaacaatta ttattcttca gatcttttgt gccatgctca ggaggttata
6421 accaaggcat tgtagattgt cttattcccc aagaatggat ccaacacttc tatcaggaat
6481 cagcgccctc ccagtcagac gtggccctaa tcaggtatgt taaccccgat acgggacgta
6541 cactgtttga agcaaaattg cacagatctg gttacattac tgtggctcac tctggagact
6601 atcctcttgt tgttccggct aatggatatt tcagatttga ttcttgggta aatcagtttt
6661 actcactcgc cccaatggga actgggaatg ggcgaaggac ggctcagtaa tggctggagc
6721 tttcattgca ggattggcag gcgacatgct cacgtcatcc gtgggctccc tggtgaacgc
6781 aggggcaaac gccatcaacc aaaagataga ctttgaaaac aacaaacaac tccagtctgc
6841 ttcctttcag catgataaag agatgctcca agcgcacgtg aaggcaacca agcagctgca
6901 atctgaaatg atagccctaa aacaggacgt tttggccgca ggcggctttt cccccactga
6961 tgcagcaagg ggagccattg gtgcacccat gacaaaggtg cttgactggt ctggcactcg
7021 atactgggca cccaattcca caaagacaac tggttattcg ggacaattca cctcttcacc
7081 tgtgcacatg cctagcccaa atgctccaca atcaaaacct gcaaagccta ggtctctagc
7141 tccttcctct tcttctagta gtgtctatag tatgtctact caatcaactc atttaacatc
7201 tggctcttct agtaatgctt cttctgcctc tacaaaattg acaaacttaa gctctggctc
7261 ctctcaaaac agaacagcag agtgggtgaa ccaacagaga agtcttagcc ctttcatgag
7321 tggcgcactc aatatctcac atgtcacgcc accctcaagt agggcttcca gttctgggac
7381 ggtctcgacc gtgcccaagg aagttttgga ctcctggacg tctgcgttta acacacacag
7441 acagccgctc ttcgcacacc tcagagtgag gggggagtca cgtgtttagt gaaaagaaat
7501 aattggctat aatgtgattt ctttttaaaa attggctatt ttgtatcttt t
//