Typing tool
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Typing tool
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Complete norovirus genomes
| KU557788 | GII.17 | |
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| GII.P17 |
ORF1: 5..5107
ORF2: 5094..6704
ORF3: 6704..7483
LOCUS KU557788 7497 bp RNA linear VRL 03-AUG-2016
DEFINITION Norovirus Hu/GII.17/2238/GD-JM/2013-08-30 ORF1, VP1, and VP2 genes,
complete cds.
ACCESSION KU557788
VERSION KU557788.1
KEYWORDS .
SOURCE Norovirus Hu/GII.17/2238/GD-JM/2013-08-30
ORGANISM Norovirus Hu/GII.17/2238/GD-JM/2013-08-30
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7497)
AUTHORS Lu,J. and Li,H.
TITLE Direct Submission
JOURNAL Submitted (19-JAN-2016) Guangdong Provincial Center for Disease
Control and Prevention, 160 Qunxian Road, Dashi, Panyu District,
Guangzhou, Guangdong 514300, China
COMMENT ##Assembly-Data-START##
Assembly Method :: Seqman v. 7.1
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7497
/organism="Norovirus Hu/GII.17/2238/GD-JM/2013-08-30"
/mol_type="genomic RNA"
/isolate="Hu/GII.17/2238/GD-JM/2013-08-30"
/host="Homo sapiens"
/db_xref="taxon:1882993"
/country="China"
/collection_date="30-Aug-2013"
/note="genotype: GII.17"
CDS 5..5107
/codon_start=1
/product="ORF1"
/protein_id="ANW82601.1"
/translation="MASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSK
QPPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQP
DAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAI
SLAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCDAFCCWVLDLND
SWLSRRMIQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIG
KLRPLNILNVLATCDWTFAGIVESMILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLS
TKSASPDIVGTINSLLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARE
LAKKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADT
CPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIE
KAKRDFPGQPDMWKDHYRPDFTHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIAR
ASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKT
LDELKQAIKNISIKKCQIVYNGCTYTMESDGRSKVVVEKVQNATVQTNNELVGALHHL
RSARVRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDKGG
CPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERN
GKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGL
VTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVS
PSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPE
GTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPG
DCGCPYIYKRGNDFVAIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPIL
GPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTE
PRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDY
WSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSD
LSTMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRW
DSTQQRAVLEAALEIMVRFSAEPQLAQIVAGDLLSPSVVDVGDFKIAINEGLPSGVPC
TSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKL
KEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGRLDQNSILRQLYWTRG
PNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQ
ESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5094..6704
/codon_start=1
/product="VP1"
/protein_id="ANW82602.1"
/translation="MASNDAAPSSDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQNN
IIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGGVE
VQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPDVR
NTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPPSV
ESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTTQL
LPSGICAFRGRVTAETDHRDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGVAS
QRNVGNDAPGSTRAHEAVISTYSPQFVPKLGSVNFRSNDNDFQLQPTKFTPVGINDDG
DHPFRQWELPDYSGLLTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIVDCLIP
QEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVPAN
GYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 6704..7483
/codon_start=1
/product="VP2"
/protein_id="ANW82603.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSLAPSSSSSSVYSMSTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 gaagatggcg tctaacgacg cttccgctgc cgttgctggc aaaaacaaca acaacgacaa
61 ggaaaaatct tcaagcgaca gcttgtttgc taacatgtct gtcactttta agaaagccct
121 cggggcgcgg tctaaacaac cgcccccggg agaaacaaaa caaatacaaa aaccaccaag
181 gccaccgaca ccggaattgg tgaagagaat acctccaccc ccacccaatg gcgaggatga
241 accagggata gtgtacaagg tgggagaggg tgtgtctggg ctgcccgacc taacaactgt
301 ggtacaacct gacgcacaaa acacagctta tagtgttccc ccacttagcc agagagaagt
361 cggcgaagct aaagaaccgc tgcctggctc cattcttgaa atgtgggatg gtgagatcta
421 ccactatggg ctgtatgttg agcgggggca tgtgctcgga gtacacaaac cacctgctgc
481 aataagcctt gccaaaattg aaataacacc gctgtctctc tactggagag tggtctacac
541 tccccagtat ttgatagatc caggaactct taagaacttg agtggagaga ctttcccata
601 cacggccttt gacaacaact gtgatgcctt ctgttgttgg gtcctagacc tcaacgactc
661 ctggcttagc aggagaatga tccaaagaac aactggattc ttcagaccgt atcaggattg
721 gaacagaaaa cccttaccaa ccatggatga accgaaaatc aagaaggccg cgaatgctgt
781 tctgtgcgct ctctcctcac tcttcactag acccattaag gacatcattg gaaagcttag
841 accactgaac attcttaatg tactggcaac ttgtgactgg acttttgcag gcatagtgga
901 atccatgatc cttcttgctg aactctttgg ggtgttctgg acccccccag atgtgtctgc
961 gatgattgct cccttactcg gtgactacga gatgcaaggc cccgaagacc tggccgtgga
1021 acttgtgccc gtggtaatgg gagggatagg tttggtgtta ggattcacca aggaaaagat
1081 cggcaagatg ctttcatcag ctgcgaccac acttagggcc tgcaaggacc taggatctta
1141 tggattggag atactcaaat tggtcatgaa gtggttcttc cccaagaagg aggaggctaa
1201 cgaactagcc atggtgaggg ccattgagga tgcagtcctg gatttggagg caatagagaa
1261 caaccacatg accacccttc tcaaggataa agacagcctg gccacataca tgaggactct
1321 tgacttggaa gaagagaaag caaggaaact gtcaaccaaa tcggcgtcac ctgacatcgt
1381 gggtacaata aactcattat tggcaaggat agcagccgcc aggtcactgg tccacaaggc
1441 taaggaggag ctctcgagca gacagagacc tgttgttgta atgatatcag gtagaccagg
1501 tataggaaag acccatctag ccagagagct agccaagaaa gttgcgtcaa cactgtcagg
1561 cgaccaaagg attggactga tacctagaaa tggcgtcgac cattgggacg cctacaaggg
1621 agaaagggtg gttctgtggg atgattatgg tatgagcaac cctatacagg acgcactgag
1681 gctccaagaa ttggctgaca cctgtcctct gaccctgaat tgtgacagga ttgaaaacaa
1741 aggaaaagtg ttcgacagtg atgccataat tataacaacc aaccttgcaa acccagcacc
1801 actagactat gtcaactttg aggcctgctc tagacgcata gacttcttgg tgtatgcaga
1861 cgcacctgac atcgagaagg ctaagcgtga tttccctggc caaccagata tgtggaaaga
1921 ccattacaga ccagacttca cacacattaa acttcagctg gcaccgcagg gaggttttga
1981 caaaaatggc aacaccccac atggcaaagg tgtggtgaag tctctgacga ttggttctct
2041 gatcgccagg gcttctggct tgctccacga gagaatggat gaattcgagc tccagggctc
2101 tgacctgcca accttcaatt ttgaccgcaa caaagtcgcc gccttcagac aattagcagc
2161 tgaaaacaaa tatggtctta tggacacact gagggtcggc aaccaactga aaagtgtcaa
2221 gaccctggat gagctgaaac aggccataaa gaacatcagt atcaagaagt gccagatagt
2281 gtataatgga tgcacctata ccatggaatc tgatgggagg agcaaggttg tggttgaaaa
2341 ggtacaaaac gcaacagttc aaaccaacaa tgaacttgta ggggcactcc accacctgag
2401 atctgcaagg gtaagatact atgttaaatg tttccaagaa gccatttact ctctacttca
2461 aattgctggt gcagccttcg tcacctcacg catcgtgagg cgcatgaaca tctcaaacct
2521 ctggtcgaag ccacccatcg aggagggtga tgagcctgaa gacaaaggag gatgccccaa
2581 gcccagggat gaagatgacc tcactattga ctctagagac attaaagtgg aagggaagaa
2641 gggcaagaac aagtctggtc ggggcaagaa acacacagcc ttctcatcca agggcctcag
2701 tgatgaagag tacgatgagt acaagagaat cagagaggag agaaatggca aatactcaat
2761 agaggaatac ctccaagata gggacagata ctatgaagag cttgccattg ctaaggccac
2821 tgaggaggac ttctgtgaag aggaggagat caaaatccgc cagagaatct tccgacccac
2881 caggaagcag cggaaagagg aaagggccac gcttgggctt gtcacaggat cggaaatcag
2941 aaagaggaat ccagatgact ttaaaccaaa aggaaaattg tgggctgatg acaacaggag
3001 cgtggattac aatgagagga tagattttga ggctcccccg agtgtttggt ctaggatagt
3061 caactttggc acaggctggg gattttgggt ttctccaagt ctctttataa cttcaacaca
3121 cgtcatacca aaaggaatca ctgaggcctt tggagtgccc ataaaccaaa tccaaattca
3181 caaatctgga gaattttgcc gcttgcggtt tccaaagccg atcagaccag acgtgagtgg
3241 gatgatcttg gaagagggtg cccctgaagg cactgttgtg tctattctca tcaaaaggac
3301 aacaggggag ctgatgcctc ttgcagtcag aatggggact catgccacaa tgaaaatcca
3361 gggtagaacg gtgggtggtc agatgggtat gcttctcact ggctcaaatg ctaaaagcat
3421 ggatctaggc acaacgccag gtgactgcgg gtgtccatac atatacaaaa ggggcaatga
3481 cttcgtggcc attggggtgc acactgcagc agcacgtgga ggcaacacgg tcatatgtgc
3541 cacacaggga agtgaaggtg aagccactct tgaaggaggt gacaacaagg gtacctattg
3601 tggagccccc attttgggac ctggcaatgc accaaaattg agcacaaaaa caaaattctg
3661 gagatcctct aacgcaccgc ttcccccagg tacttatgaa ccagcatacc ttggtgggag
3721 agatccgcgc gtgaagggag gcccatctct gcaacaagtt atgagagacc aacttaaacc
3781 tttcacagag cccagaggga agccaccaaa cccaaatgtc ctagagtcag caaagaagac
3841 tatcatcaat gttctggaac aaaccattga cccccctcaa aagtggtcat atgcccaagc
3901 ttgtgcatcc ctcgacaaga caacctccag tggatacccg caccacgtcc ggaagaatga
3961 ctattggagt ggtgaatcct tcacagggaa acttgcagac caggcttcaa aagcaaatct
4021 catgtatgag gaaggcaagc acatgcaacc agtttacacc gcagcactca aagacgagct
4081 cgtgaaaact gacaaaattt atggcaagat caagaaaaga ctcctgtggg gttctgacct
4141 ctccaccatg attcgatgcg ccagagcatt tggtggtctc atggatgagc tcaaagcaaa
4201 ttgtattaca ctccctatca gagttggtat gaatatgaat gaagacggtc ccataatatt
4261 tgagaaacac tccaggtaca ggtaccacta tgatgctgat tactcccgct gggactccac
4321 acaacagcgg gcagtgctgg aagcggcact tgaaatcatg gtgagatttt ctgctgagcc
4381 acagctggca caaatagtgg caggggacct gctgtcacca agtgtggttg atgtgggcga
4441 tttcaaaatc gctatcaatg aaggcctacc atctggcgtg ccttgcacct cacaatggaa
4501 ttctattgcc cactggttac tcaccctgtg tgccctttct gaagtgacag gactaggtcc
4561 tgacatcata caagccaact ccatgtactc tttctatggt gatgatgaga ttgtgagcac
4621 agacataaaa ttggacccag agaaattgac cgcaaaactc aaagaatatg gccttaaacc
4681 cactcggccc gacaaaactg aggggccgct ggtgattagt gaagacctga atgggttgac
4741 tttcctccgc cgaacagtca cccgtgatcc agcaggttgg tttggaaggt tggaccaaaa
4801 ctccatcctc aggcagttgt actggacaag aggacccaac catgaagacc ccagtgagac
4861 catgatacca cacgcacaga gacctgtgca gctcatggca ctactaggag aatcctccct
4921 acatggaccc tcattttaca gcaaggttag caaactggtc atatctgaac ttaaagaggg
4981 aggaatggat ttttatgtgc ccagacaaga gtcaatgttc agatggatga ggttctcaga
5041 tctaagcaca tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt
5101 cgaatgacgc cgctccatct agtgatggtg ctgctggtct tgtaccagag ggcaacaacg
5161 agacccttcc cctagaacca gttgcgggcg cagctatagc cgcacccgtc actggccaaa
5221 acaacataat tgacccctgg attagaacaa attttgtgca agcaccaaat ggagagttca
5281 cagtgtcacc cagaaactcc cctggagaaa ttttactaaa cctagagttg ggccctgatt
5341 tgaaccctta tttggctcat ttgtcaagga tgtacaatgg gtatgctggt ggagtggaag
5401 ttcaggttct cctggcaggg aacgcgttca ctgccggaaa gatcctcttc gccgccgtcc
5461 cgccaaattt cccagtggaa ttcttaagcc cagcccagat tacaatgctc ccacatttaa
5521 tagtagatgt caggactctt gaaccaatta tgatcccact ccctgatgtt aggaatacat
5581 tcttccatta taacaaccag cctaacagcc gcatgagatt agtggctatg ctctacaccc
5641 cccttagatc taatggctca ggtgatgatg tctttactgt ctcttgcagg gttttgacta
5701 ggcctactcc tgattttgag ttcacttatt tagtgccacc ttctgttgaa tctaagacta
5761 agcctttttc cttacctatt ttaacccttt ctgagctcac aaattcgagg ttcccagtcc
5821 ccatcgattc gcttttcacc gcccagaata atgtgttgca ggtgcagtgt caaaatggca
5881 ggtgcacact tgatggtgag ttacaaggca caacccagtt gctcccatct ggcatctgtg
5941 cattcagagg acgggtgaca gcagaaactg accatcgtga caagtggcac atgcaactgc
6001 aaaacctcaa tggcacaaca tatgacccaa ctgatgatgt gccagccccg ctgggtacac
6061 ctgacttcaa gggcgtcgtg tttggggtag caagccaaag aaatgtgggt aatgatgcgc
6121 ctggctcaac cagggcccat gaggcggtga tttcaaccta tagcccccaa tttgttccca
6181 aattaggttc tgtcaatttt agaagtaatg ataatgattt ccaattgcag ccgacaaaat
6241 tcacaccagt gggcatcaat gacgatggtg accacccgtt cagacagtgg gaactaccag
6301 actattcagg gctgcttacc ttgaatatga accttgcccc cccggttgct ccaaatttcc
6361 ctggtgaaca attattattc ttcagatctt ttgtgccatg ctcaggaggt tataaccaag
6421 gcattgtaga ctgtcttatt ccccaagaat ggatccaaca cttctatcag gaatcagcgc
6481 cctcccagtc agacgtggcc ctaatcaggt acgttaaccc cgatacggga cgtacactgt
6541 ttgaagcaaa attgcacaga tctggttaca ttactgtggc tcactctgga gactatcctc
6601 ttgttgttcc ggctaatgga tactttagat ttgattcttg ggtaaatcag ttttactcac
6661 tcgccccaat gggaactggg aatgggcgaa ggagggctca gtaatggctg gagcttttat
6721 tgcaggattg gcaggcgaca tgctcacatc atctgtgggc tccctggtga acgcaggggc
6781 aaacgccatc aaccaaaaga tagactttga aaacaacaaa caactccagt ctgcttcctt
6841 tcagcatgat aaagagatgc tccaagcgca ggtgaaggca accaagcagc tgcaatctga
6901 aatgatagcc ctaaaacagg gggttttggc cgcaggcggc ttttccccca ctgatgcagc
6961 aaggggagcc attggtgcac ccatgacaaa ggtgcttgac tggtctggca ctcgatactg
7021 ggcacccaat tccacaaaga caactggtta ttcgggacaa ttcacctctt cacctgtgca
7081 catgcctagc ccaaatgctc cacaatcaaa acctgcaaag cctaggtccc tagctccttc
7141 ttcttcttct agtagtgtct atagtatgtc tactcaatca actcatttaa catctggctc
7201 ttctagtaat gcttcttctg cctctacaaa attgacaaac ttaagctctg gctcctctca
7261 aaacagaaca gcagagtggg tgaaccaaca gagaagtctt agccctttca tgagtggtgc
7321 actcaacatc tcacatgtca cgccaccctc aagtagggct tccagttctg ggacagtctc
7381 gaccgtgccc aaggaagttt tggactcctg gacgtctgcg tttaacacac acagacagcc
7441 gctcttcgca cacctcagag tgagggggga gtcacgtgtt tagtgaaaag aaataat
//