Typing tool
|
Complete norovirus genomes
KT992790 | GII.17 | ||
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GII.P17 |
ORF1: 5..5113 ORF2: 5094..6716 ORF3: 6716..7495LOCUS KT992790 7548 bp RNA linear VRL 15-NOV-2015 DEFINITION Norovirus Hu/GII.17/HNkaohao/Nanyang/CHN/2015, partial genome. ACCESSION KT992790 VERSION KT992790.1 KEYWORDS . SOURCE Norovirus Hu/GII.17/HNkaohao/Nanyang/CHN/2015 ORGANISM Norovirus Hu/GII.17/HNkaohao/Nanyang/CHN/2015 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7548) AUTHORS Huang,X., Su,J., Lu,Q., Xu,B., Li,Y., Li,S., Zhao,J., Li,M. and Shen,X. TITLE Acute gastroenteritis outbreak caused by human Norovirus GII.17 in a university in Henan province, China JOURNAL Unpublished REFERENCE 2 (bases 1 to 7548) AUTHORS Huang,X., Su,J., Lu,Q., Xu,B., Li,Y., Li,S., Zhao,J., Li,M. and Shen,X. TITLE Direct Submission JOURNAL Submitted (04-NOV-2015) Henan Key Laboratory of Pathogenic Microorganisms, Henan Center for Disease Control and Prevention, No. 105 South Agricultural Road Zhengdong New District, Zhengzhou, Henan 450016, China FEATURES Location/Qualifiers source 1..7548 /organism="Norovirus Hu/GII.17/HNkaohao/Nanyang/CHN/2015" /mol_type="genomic RNA" /isolate="Hu/GII.17/HNkaohao/Nanyang/CHN/2015" /host="Homo sapiens" /db_xref="taxon:1749331" /country="China" /collection_date="Mar-2015" /note="genotype: GII.17" gene 5..5113 /gene="ORF1" CDS 5..5113 /gene="ORF1" /codon_start=1 /product="polyprotein" /protein_id="ALN44217.1" /translation="MKNASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGAR SKQPPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVV QPDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPA AISLAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDL NDSWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDI IGKLRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQG PEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKW FFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARK LSTKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLA RELAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELA DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPD IEKAKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLI ARASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSV KTLDELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALH HLRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDR GGCPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE RNGKYSIEEYLQDRDKYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATL GLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFW VSPSLFITSTHVIPKGITDAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGA PEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTT PGDCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAP ILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPF TEPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKN DYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWG SDLSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYS RWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGV PCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTA KLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWT RGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVP RQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 5094..6716 /gene="VP1" CDS 5094..6716 /gene="VP1" /codon_start=1 /product="viral protein 1" /protein_id="ALN44218.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6716..7495 /gene="VP2" CDS 6716..7495 /gene="VP2" /codon_start=1 /product="viral protein 2" /protein_id="ALN44219.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST HLTSGSSSSASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 ttgaatgaag aatgcgtcta acgacgcttc cgctgccgtt gctggcaaaa acaacaacaa 61 cgacaaggaa aaatcttcaa gtgacagctt gtttgctaac atgtctgtca cttttaagaa 121 agccctcggg gcgcggtcta aacaaccgcc cccgggagaa acaaaacaaa tacaaaaacc 181 accaaggcca ccgacaccgg aattggtgaa gagaatacct ccacccccac ccaatggcga 241 ggatgaacca gggatagtgt acaaggtggg agagggtgtg tctgggctgc ccgacctaac 301 aactgtggta caacctgacg cacaaaacac agcttatagt gttcccccac ttagccagag 361 agaagtcggc gaagctaaag aaccgctgcc tggctccatt ctggaaatgt gggatggtga 421 gatctaccac tatgggctgt atgttgagcg ggggcatgtg ctcggagtac acaaaccacc 481 tgctgcaata agccttgcca aaattgaaat aacaccgctg tctctctact ggagagtggt 541 ctacactccc cagtatttga tagatccagg aactcttaag aacttgagtg gagagacttt 601 cccatacacg gcctttgaca acaactgtta tgccttctgt tgttgggtcc tagacctcaa 661 cgactcctgg cttagcagga gaatgatcca aagaacaact ggattcttca aaccttatca 721 ggattggaac agaaaaccct taccaaccat ggatgaaccg aaaatcaaga aggccgcaaa 781 tgctgtccta tgcgctctct cctcactctt cactagaccc attaaggaca tcattggaaa 841 gcttagacca ctgaacattc ttaatatact ggcaacctgc gattggactt ttgcaggcat 901 agtggaatcc ttgatccttc ttgctgaact ctttggggtg ttctggacac ccccagatgt 961 gtctgcgatg attgctccct tactcggtga ctacgagatg caaggccccg aagacctggc 1021 cgtggaactt gtgcccgtgg tgatgggagg aataggtttg gtgttaggat tcaccaaaga 1081 aaagatcggc aagatgcttt catcagctgc gaccacactt agggcctgca aggatctagg 1141 atcttatgga ttggagatac tcaaattggt catgaagtgg ttcttcccca agaaggagga 1201 ggctaacgaa ctagccatgg tgagggccat tgaggatgca gtcctggatt tggaggcaat 1261 agaaaacaat cacatgacca cccttctcaa ggataaagac agcctggcca catacatgag 1321 gactcttgac ttggaagaag agaaggcaag gaaactgtca accaaatcgg cgtcacctga 1381 catcgtgggt acaataaacg cattattggc taggatagca gccgccaggt cactggtcca 1441 caaggctaag gaggagctct cgagcagaca gagacctgtt gttgtaatga tatcaggtag 1501 accaggtata ggaaagaccc atctggccag agagctagcc aagaaagttg cgtcaacact 1561 gtcaggcgac caaaggattg gactggtacc tagaaatggc gtcgaccatt gggacgccta 1621 caagggagaa agggtggttc tgtgggatga ttatggtatg agcaacccta tacaggacgc 1681 actgaggctc caagaattgg ctgacacctg tcctctgacc ctaaattgtg ataggattga 1741 aaacaaagga aaagtgttcg acagtgatgc cataattata acaaccaacc ttgcaaaccc 1801 agcaccacta gactatgtca actttgaggc ctgctctaga cgcatagact tcttggtgta 1861 tgcagacgca cctgacattg agaaggctaa gcgtgacttc cccggccaac cagatatgtg 1921 gaaagaccat ttcagaccag acttctcaca cattaaactt cagctggcac cacagggagg 1981 ttttgacaaa aatggcaaca ccccacatgg caaaggtgtg gtgaagtccc tgacgattgg 2041 ttctctgatc gccagggcct ccggcttgct ccacgagaga atggatgaat tcgagctcca 2101 aggctctgac ctgccaacct tcaattttga ccgcaacaaa gtcgccgcct tcagacaatt 2161 agcagctgaa aacaaatatg gtcttatgga cacactgagg gtcggcaacc aactgaaaag 2221 tgttaagacc ctggatgagc tgaagcaggc cataaagaac atcagtatca agaagtgtca 2281 gatagtgtat aatggatgca cctataccat ggaatctgat gggaggggca aggttgtggt 2341 tgaaaaggta caaaacgcaa cagttcaaac caacaatgaa cttgtagggg cgctccacca 2401 cctgagatct gcaaggataa gatactatgt taaatgtttc caagaagcca tttactctct 2461 actccaaatt gctggtgcag ccttcgtcac ctcacgcatc gtgaggcgca tgaacatatc 2521 aaacctctgg tcgaagccac ccatcgagga gggtgatgag cctgaagaca gaggaggatg 2581 ccccaagccc agggatgaag atgacctcac tattgactct agagacatta aagtggaagg 2641 gaagaagggc aagaacaagt ctggccgggg caagaaacac acagccttct cttccaaggg 2701 cctcagtgat gaagagtacg atgagtacaa gagaatcaga gaggagagga atggcaaata 2761 ctcaatagag gaatacctcc aagataggga caaatactat gaagagcttg ccattgctaa 2821 ggccactgag gaggacttct gtgaggagga ggagatcaaa atccgccaga gaatcttccg 2881 acccaccagg aagcagcgga aagaggaaag ggccacgctt gggcttgtca caggatcgga 2941 aatcagaaag aggaatccag atgactttaa accaaaagga aaattgtggg ctgatgacaa 3001 caggagcgtg gattacaatg agaggataga ttttgaggct cccccgagtg tttggtctag 3061 gatagtcaac tttggcacag gctggggatt ctgggtttct ccaagtctct ttataacttc 3121 aacacacgtc ataccaaaag gaattactga tgcctttgga gtgcccataa accaaatcca 3181 aattcacaaa tctggagaat tttgccgctt gcggtttcca aagccaatta gaccagacgt 3241 gagtgggatg atcttggaag agggcgcccc tgaaggcact gttgtgtcta ttctcatcaa 3301 aagaacaaca ggggagctga tgcctcttgc agtcaggatg gggactcatg ccacaatgaa 3361 aatccaaggt agaacggtgg gtggtcagat gggtatgctt ctcactggct caaatgctaa 3421 aagcatggat ctaggcacaa cgccaggtga ctgcggatgt ccatacatat acaaaagggg 3481 caatgacctt gtggtcattg gggtgcacac tgcagcggct cgtggaggca acacggtcat 3541 atgtgccaca cagggaagtg aaggtgaagc cactcttgaa ggaggtgaca acaagggtac 3601 ctattgtgga gcccccattt tgggacctgg caacgcacca aaattgagca caaagacaaa 3661 attctggaga tcctctaacg caccgcttcc cccaggtact tatgaaccag cataccttgg 3721 tgggagagac ccgcgcgtga agggaggccc atctctgcaa caagttatga gagaccaact 3781 taaacctttt acagagccca gagggaagcc accaaaccca aatgtcttag agtcagcaaa 3841 gaagactatc atcaatgttc tggaacaaac cattgacccc cctcaaaagt ggtcatatgc 3901 ccaagcttgt gcatccctcg acaagacaac ctccagtgga tacccgcacc acgtccggaa 3961 gaatgactat tggagtggtg aatccttcac aggaaaactt gcagatcagg cttcaaaagc 4021 aaatctcatg tatgaggaag gcaagcacat gcaaccagtt tacaccgcag cactcaaaga 4081 cgagctcgtg aaaactgaca aaatttatgg caaaatcaag aaaagactcc tgtggggttc 4141 tgacctctcc acaatgattc gatgcgccag agcatttggt ggtctcatgg atgaattcaa 4201 agcaaattgt attacactcc ctatcagagt tggcatgaat atgaatgaag atggtcccat 4261 aatatttgag aaacactcca ggtacaggta ccactatgat gctgattact cccgctggga 4321 ctccacacaa cagcgggcag tgctggaagc ggcacttgaa atcatggtga gattttctgc 4381 tgagccacag ctggcacaaa tagtggcaga ggacctgctg tcaccaagtg tggttgatgt 4441 gggcgatttc aaaatcgcta tcaatgaagg cctaccatct ggcgtgcctt gcacctcaca 4501 atggaattct attgcccact ggttacttac cttgtgtgcc ctttctgaag tgacaggatt 4561 aggtcctgac atcatacaag ccaactccat gtactctttc tatggtgatg atgagattgt 4621 gagcacagac ataaaattgg acccagagaa attgaccgca aaactcaaag aatatggcct 4681 taaacccact cggcccgaca aaactgaggg gccgttggtg attagtgagg acctgaatgg 4741 gttgactttc ctccgccgaa cagtcacccg tgatccagca ggttggtttg gaaagttgga 4801 ccaaaactcc atcctcaggc agttgtactg gacaagagga cccaaccatg aagaccccag 4861 tgagaccatg ataccacacg cacaaagacc tgtgcagctc atggcactac taggagaatc 4921 ctccctacat ggaccctcat tttacagcaa ggttagcaaa ttagtcatat ctgaacttaa 4981 agagggagga atggattttt atgtgcccag acaagagtca atgttcagat ggatgaggtt 5041 ctcagatcta agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga 5101 tggcgtcgaa tgacgccgct ccatctaatg atggtgctgc tggtctcgta ccagagggca 5161 ataacgagac ccttccccta gaaccagttg cgggcgcagc tatagccgca cccgtcactg 5221 gccaaaataa cataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatggag 5281 agttcacagt gtcacccaga aactctcctg gagaaatttt attaaactta gagttgggcc 5341 ctgatttgaa cccttatttg gctcatttgt caaggatgta caatgggtat gctggtggag 5401 tggaagttca ggttctcctg gcagggaacg cgttcactgc cggaaagatc ctcttcgccg 5461 ccgtcccgcc aaatttccca gtggaattct taagcccagc ccagatcaca atgctcccac 5521 atttaatagt agatgttagg actcttgaac caattatgat cccactccct gatgttagga 5581 atacattctt ccattatagt aaccagccta atagccgcat gagattagtg gctatgctct 5641 ataccccact cagatctaat ggctcaggtg atgatgtctt taccgtctct tgcagggttt 5701 tgactaggcc tactcctgat tttgagttca cttatttagt gccaccttct gttgaatcta 5761 aaactaagcc tttttcctta cctattttaa ccctttctga gctcacaaat tcgaggttcc 5821 cagtccccat cgattcgctt ttcaccgccc agaataatgt gttgcaggtg cagtgtcaaa 5881 atggcaggtg tacacttgat ggtgagttac aaggcacaac ccagttgctc ccatctggca 5941 tctgtgcatt cagaggacgg gtgacagcac aaattaacca acgtgacagg tggcacatgc 6001 aactgcaaaa cctcaatggt acaacatatg acccaactga tgatgtgcca gccccgctgg 6061 gtacacctga cttcaagggc gtcgtgtttg ggatggtaag ccaaagaaat gtgggtaatg 6121 atgcgcctgg ctcaaccaga gcccaacagg cgtgggtttc aacctatagc ccccaatttg 6181 tccccaaatt aggttctgtc aatcttagaa ttagtgataa tgatgatttc caattccagc 6241 cgacaaaatt cacaccagtg ggcgtcaatg atgacgatga tggccacccg ttcagacaat 6301 gggaactacc aaactattca ggggagctta cattgaatat gaatcttgcc cccccagttg 6361 ctccaaattt tcctggtgaa caattgttat tcttcagatc tttcgtgcca tgctcaggag 6421 gttacaacca aggtattata gattgtctta ttccccaaga atggatccaa cacttctatc 6481 aggaatcagc accctcccag tcagacgtgg ccctaatcag gtatgtcaac cccgatacgg 6541 gacgtacact gtttgaagca aaattgcaca gatctggtta cattactgtg gctcactctg 6601 gagactatcc tcttgttgtt ccggctaatg gacactttag atttgattct tgggtaaatc 6661 agttttactc actcgcccca atgggaactg ggaatgggcg aaggagggct cagtaatggc 6721 tggggctttc attgcaggat tggcaggcga catgctcacg tcatctgtgg gctcccttgt 6781 gaacgcaggg gcaaacgcca tcaaccaaaa gatagacttt gaaaacaaca aacaactcca 6841 gtctgcttcc tttcagcatg ataaagagat gctccaagcg caggtgaggg caaccaagca 6901 gctgcaatct gaaatgatag ccctaaaaca gggggttttg gccgcaggcg gcttttcccc 6961 cactgatgca gcaaggggat ccattggtgc acccatgaca aaggtgcttg actggtctgg 7021 cactcgatac tgggcgccca attccacaaa gacaactggc tattcgggac aattcacctc 7081 ttcacctgtg catatgtcta gcccaaatgc tccacaatca aaacctgcaa agcctaggtc 7141 tctagctcct tcctcttctt ctagtagtgt ctatagtatg tatactcaat ctactcattt 7201 aacatctggc tcttctagta gtgcttcttc tgcctccaca aaattgacaa atttaagctc 7261 tggctcctct caaaacagaa cagcagagtg ggtaaatcaa cagagaagtc ttagcccttt 7321 catgagtggc gcgcttaaca tctcacatgt cacgccaccc tcaagtaggg cttccagttc 7381 tgggacggtc tcgaccgtgc ccaaggaagt tttggactcc tggacgtctg cgtttaacac 7441 acacagacag ccgctcttcg cacacctcag agtgaggggg gagtcacgtg tttagtgaaa 7501 agaaataatt ggctataatg tgatttcttt ctaaatttgg ctaaagaa //