Typing tool
|
Complete norovirus genomes
KT992788 | GII.17 | ||
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GII.P17 |
ORF1: 4..5112 ORF2: 5093..6715 ORF3: 6715..7494LOCUS KT992788 7498 bp RNA linear VRL 15-NOV-2015 DEFINITION Norovirus Hu/GII.17/HN04/Nanyang/CHN/2015, partial genome. ACCESSION KT992788 VERSION KT992788.1 KEYWORDS . SOURCE Norovirus Hu/GII.17/HN04/Nanyang/CHN/2015 ORGANISM Norovirus Hu/GII.17/HN04/Nanyang/CHN/2015 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7498) AUTHORS Huang,X., Su,J., Lu,Q., Xu,B., Li,Y., Li,S., Zhao,J., Li,M. and Shen,X. TITLE Acute gastroenteritis outbreak caused by human Norovirus GII.17 in a university in Henan province, China JOURNAL Unpublished REFERENCE 2 (bases 1 to 7498) AUTHORS Huang,X., Su,J., Lu,Q., Xu,B., Li,Y., Li,S., Zhao,J., Li,M. and Shen,X. TITLE Direct Submission JOURNAL Submitted (04-NOV-2015) Henan Key Laboratory of Pathogenic Microorganisms, Henan Center for Disease Control and Prevention, No. 105 South Agricultural Road Zhengdong New District, Zhengzhou, Henan 450016, China FEATURES Location/Qualifiers source 1..7498 /organism="Norovirus Hu/GII.17/HN04/Nanyang/CHN/2015" /mol_type="genomic RNA" /isolate="Hu/GII.17/HN04/Nanyang/CHN/2015" /host="Homo sapiens" /db_xref="taxon:1749329" /country="China" /collection_date="Mar-2015" /note="genotype: GII.17" gene 4..5112 /gene="ORF1" CDS 4..5112 /gene="ORF1" /codon_start=1 /product="polyprotein" /protein_id="ALN44211.1" /translation="MKMASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGAR SKQPPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVV QPDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPA AIILAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDL NDSWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDI IGKLRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQG PEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKW FFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARK LSTKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLA RELAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELA DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPD IEKAKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLI ARASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSV KTLDELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALH HLRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDR GGCPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE RNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATL GLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFW VSPSLFITSTHVIPKGITDAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGA PEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTT PGDCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAP ILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPF TEPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKN DYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWG SDLSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYS RWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGV PCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTA KLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWT RGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVP RQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 5093..6715 /gene="VP1" CDS 5093..6715 /gene="VP1" /codon_start=1 /product="viral protein 1" /protein_id="ALN44212.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6715..7494 /gene="VP2" CDS 6715..7494 /gene="VP2" /codon_start=1 /product="viral protein 2" /protein_id="ALN44213.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST HLTSGSSSSASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 tgaatgaaga tggcgtctaa cgacgcttcc gctgccgttg ctggcaaaaa caacaacaac 61 gacaaggaaa aatcttcaag tgacagcttg tttgctaaca tgtctgtcac ttttaagaaa 121 gccctcgggg cgcggtctaa acaaccgccc ccgggagaaa caaaacaaat acaaaaacca 181 ccaaggccac cgacaccgga attggtgaag agaatacctc cacccccacc caatggcgag 241 gatgaaccag ggatagtgta caaggtggga gagggtgtgt ctgggctgcc cgacctaaca 301 actgtggtac aacctgacgc acaaaacaca gcttatagtg ttcccccact tagccagaga 361 gaagtcggcg aagctaaaga accgctgcct ggctccattc tggaaatgtg ggatggtgag 421 atctaccact atgggctgta tgttgagcgg gggcatgtgc tcggagtaca caaaccacct 481 gctgcaataa tccttgccaa aattgaaata acaccgctgt ctctctactg gagagtggtc 541 tacactcccc agtatttgat agatccagga actcttaaga acttgagtgg agagactttc 601 ccatacacgg cctttgacaa caactgttat gccttctgtt gttgggtcct agacctcaac 661 gactcctggc ttagcaggag aatgatccaa agaacaactg gattcttcaa accttatcag 721 gattggaaca gaaaaccctt accaaccatg gatgaaccga aaatcaagaa ggccgcaaat 781 gctgtcctat gcgctctctc ctcactcttc actagaccca ttaaggacat cattggaaag 841 cttagaccac tgaacattct taatatactg gcaacctgcg attggacttt tgcaggcata 901 gtggaatcct tgatccttct tgctgaactc tttggggtgt tctggacacc cccagatgtg 961 tctgcgatga ttgctccctt actcggtgac tacgagatgc aaggccccga agacctggcc 1021 gtggaacttg tgcccgtggt gatgggagga ataggtttgg tgttaggatt caccaaagaa 1081 aagatcggca agatgctttc atcagctgcg accacactta gggcctgcaa ggatctagga 1141 tcttatggat tggagatact caaattggtc atgaagtggt tcttccccaa gaaggaggag 1201 gctaacgaac tagccatggt gagggccatt gaggatgcag tcctggattt ggaggcaata 1261 gaaaacaatc acatgaccac ccttctcaag gataaagaca gcctggccac atacatgagg 1321 actcttgact tggaagaaga gaaggcaagg aaactgtcaa ccaaatcggc gtcacctgac 1381 atcgtgggta caataaacgc attattggct aggatagcag ccgccaggtc actggtccac 1441 aaggctaagg aggagctctc gagcagacag agacctgttg ttgtaatgat atcaggtaga 1501 ccaggtatag gaaagaccca tctggccaga gagctagcca agaaagttgc gtcaacactg 1561 tcaggcgacc aaaggattgg actggtacct agaaatggcg tcgaccattg ggacgcctac 1621 aagggagaaa gggtggttct gtgggatgat tatggtatga gcaaccctat acaggacgca 1681 ctgaggctcc aagaattggc tgacacctgt cctctgaccc taaattgtga taggattgaa 1741 aacaaaggaa aagtgttcga cagtgatgcc ataattataa caaccaacct tgcaaaccca 1801 gcaccactag actatgtcaa ctttgaggcc tgctctagac gcatagactt cttggtgtat 1861 gcagacgcac ctgacattga gaaggctaag cgtgacttcc ccggccaacc agatatgtgg 1921 aaagaccatt tcagaccaga cttctcacac attaaacttc agctggcacc acagggaggt 1981 tttgacaaaa atggcaacac cccacatggc aaaggtgtgg tgaagtccct gacgattggt 2041 tctctgatcg ccagggcctc cggcttgctc cacgagagaa tggatgaatt cgagctccaa 2101 ggctctgacc tgccaacctt caattttgac cgcaacaaag tcgccgcctt cagacaatta 2161 gcagctgaaa acaaatatgg tcttatggac acactgaggg tcggcaacca actgaaaagt 2221 gttaagaccc tggatgagct gaagcaggcc ataaagaaca tcagtatcaa gaagtgtcag 2281 atagtgtata atggatgcac ctataccatg gaatctgatg ggaggggcaa ggttgtggtt 2341 gaaaaggtac aaaacgcaac agttcaaacc aacaatgaac ttgtaggggc gctccaccac 2401 ctgagatctg caaggataag atactatgtt aaatgtttcc aagaagccat ttactctcta 2461 ctccaaattg ctggtgcagc cttcgtcacc tcacgcatcg tgaggcgcat gaacatatca 2521 aacctctggt cgaagccacc catcgaggag ggtgatgagc ctgaagacag aggaggatgc 2581 cccaagccca gggatgaaga tgacctcact attgactcta gagacattaa agtggaaggg 2641 aagaagggca agaacaagtc tggccggggc aagaaacaca cagccttctc ttccaagggc 2701 ctcagtgatg aagagtacga tgagtacaag agaatcagag aggagaggaa tggcaaatac 2761 tcaatagagg aatacctcca agatagggac agatactatg aagagcttgc cattgctaag 2821 gccactgagg aggacttctg tgaggaggag gagatcaaaa tccgccagag aatcttccga 2881 cccaccagga agcagcggaa agaggaaagg gccacgcttg ggcttgtcac aggatcggaa 2941 atcagaaaga ggaatccaga tgactttaaa ccaaaaggaa aattgtgggc tgatgacaac 3001 aggagcgtgg attacaatga gaggatagat tttgaggctc ccccgagtgt ttggtctagg 3061 atagtcaact ttggcacagg ctggggattc tgggtttctc caagtctctt tataacttca 3121 acacacgtca taccaaaagg aattactgat gcctttggag tgcccataaa ccaaatccaa 3181 attcacaaat ctggagaatt ttgccgcttg cggtttccaa agccaattag accagacgtg 3241 agtgggatga tcttggaaga gggcgcccct gaaggcactg ttgtgtctat tctcatcaaa 3301 agaacaacag gggagctgat gcctcttgca gtcaggatgg ggactcatgc cacaatgaaa 3361 atccaaggta gaacggtggg tggtcagatg ggtatgcttc tcactggctc aaatgctaaa 3421 agcatggatc taggcacaac gccaggtgac tgcggatgtc catacatata caaaaggggc 3481 aatgaccttg tggtcattgg ggtgcacact gcagcggctc gtggaggcaa cacggtcata 3541 tgtgccacac agggaagtga aggtgaagcc actcttgaag gaggtgacaa caagggtacc 3601 tattgtggag cccccatttt gggacctggc aacgcaccaa aattgagcac aaagacaaaa 3661 ttctggagat cctctaacgc accgcttccc ccaggtactt atgaaccagc ataccttggt 3721 gggagagacc cgcgcgtgaa gggaggccca tctctgcaac aagttatgag agaccaactt 3781 aaacctttta cagagcccag agggaagcca ccaaacccaa atgtcttaga gtcagcaaag 3841 aagactatca tcaatgttct ggaacaaacc attgaccccc ctcaaaagtg gtcatatgcc 3901 caagcttgtg catccctcga caagacaacc tccagtggat acccgcacca cgtccggaag 3961 aatgactatt ggagtggtga atccttcaca ggaaaacttg cagatcaggc ttcaaaagca 4021 aatctcatgt atgaggaagg caagcacatg caaccagttt acaccgcagc actcaaagac 4081 gagctcgtga aaactgacaa aatttatggc aaaatcaaga aaagactcct gtggggttct 4141 gacctctcca caatgattcg atgcgccaga gcatttggtg gtctcatgga tgaattcaaa 4201 gcaaattgta ttacactccc tatcagagtt ggcatgaata tgaatgaaga tggtcccata 4261 atatttgaga aacactccag gtacaggtac cactatgatg ctgattactc ccgctgggac 4321 tccacacaac agcgggcagt gctggaagcg gcacttgaaa tcatggtgag attttctgct 4381 gagccacagc tggcacaaat agtggcagag gacctgctgt caccaagtgt ggttgatgtg 4441 ggcgatttca aaatcgctat caatgaaggc ctaccatctg gcgtgccttg cacctcacaa 4501 tggaattcta ttgcccactg gttacttacc ttgtgtgccc tttctgaagt gacaggatta 4561 ggtcctgaca tcatacaagc caactccatg tactctttct atggtgatga tgagattgtg 4621 agcacagaca taaaattgga cccagagaaa ttgaccgcaa aactcaaaga atatggcctt 4681 aaacccactc ggcccgacaa aactgagggg ccgttggtga tcagtgagga cctgaatggg 4741 ttgactttcc tccgccgaac agtcacccgt gatccagcag gttggtttgg aaagttggac 4801 caaaactcca tcctcaggca gttgtactgg acaagaggac ccaaccatga agaccccagt 4861 gagaccatga taccacacgc acaaagacct gtgcagctca tggcactact aggagaatcc 4921 tccctacatg gaccctcatt ttacagcaag gttagcaaat tagtcatatc tgaacttaaa 4981 gagggaggaa tggattttta tgtgcccaga caagagtcaa tgttcagatg gatgaggttc 5041 tcagatctaa gcacatggga gggcgatcgc aatctggctc ccagttttgt gaatgaagat 5101 ggcgtcgaat gacgccgctc catctaatga tggtgctgct ggtctcgtac cagagggcaa 5161 taacgagacc cttcccctag aaccagttgc gggcgcagct atagccgcac ccgtcactgg 5221 ccaaaataac ataattgacc cctggattag aacaaatttt gtgcaagcac caaatggaga 5281 gttcacagtg tcacccagaa actctcctgg agaaatttta ttaaacttag agttgggccc 5341 tgatttgaac ccttatttgg ctcatttgtc aaggatgtac aatgggtatg ctggtggagt 5401 ggaagttcag gttctcctgg cagggaacgc gttcactgcc ggaaagatcc tcttcgccgc 5461 cgtcccgcca aatttcccag tggaattctt aagcccagcc cagatcacaa tgctcccaca 5521 tttaatagta gatgttagga ctcttgaacc aattatgatc ccactccctg atgttaggaa 5581 tacattcttc cattatagta accagcctaa tagccgcatg agattagtgg ctatgctcta 5641 taccccactc agatctaatg gctcaggtga tgatgtcttt accgtctctt gcagggtttt 5701 gactaggcct actcctgatt ttgagttcac ttatttagtg ccaccttctg ttgaatctaa 5761 aactaagcct ttttccttac ctattttaac cctttctgag ctcacaaatt cgaggttccc 5821 agtccccatc gattcgcttt tcaccgccca gaataatgtg ttgcaggtgc agtgtcaaaa 5881 tggcaggtgt acacttgatg gtgagttaca aggcacaacc cagttgctcc catctggcat 5941 ctgtgcattc agaggacggg tgacagcaca aattaaccaa cgtgacaggt ggcacatgca 6001 actgcaaaac ctcaatggta caacatatga cccaactgat gatgtgccag ccccgctggg 6061 tacacctgac ttcaagggcg tcgtgtttgg gatggtaagc caaagaaatg tgggtaatga 6121 tgcgcctggc tcaaccagag cccaacaggc gtgggtttca acctatagcc cccaatttgt 6181 ccccaaatta ggttctgtca atcttagaat tagtgataat gatgatttcc aattccagcc 6241 gacaaaattc acaccagtgg gcgtcaatga tgacgatgat ggccacccgt tcagacaatg 6301 ggaactacca aactattcag gggagcttac attgaatatg aatcttgccc ccccagttgc 6361 tccaaatttt cctggtgaac aattgttatt cttcagatct ttcgtgccat gctcaggagg 6421 ttacaaccaa ggtattatag attgtcttat tccccaagaa tggatccaac acttctatca 6481 ggaatcagca ccctcccagt cagacgtggc cctaatcagg tatgtcaacc ccgatacggg 6541 acgtacactg tttgaagcaa aattgcacag atctggttac attactgtgg ctcactctgg 6601 agactatcct cttgttgttc cggctaatgg acactttaga tttgattctt gggtaaatca 6661 gttttactca ctcgccccaa tgggaactgg gaatgggcga aggagggctc agtaatggct 6721 ggggctttca ttgcaggatt ggcaggcgac atgctcacgt catctgtggg ctcccttgtg 6781 aacgcagggg caaacgccat caaccaaaag atagactttg aaaacaacaa acaactccag 6841 tctgcttcct ttcagcatga taaagagatg ctccaagcgc aggtgagggc aaccaagcag 6901 ctgcaatctg aaatgatagc cctaaaacag ggggttttgg ccgcaggcgg cttttccccc 6961 actgatgcag caaggggatc cattggtgca cccatgacaa aggtgcttga ctggtctggc 7021 actcgatact gggcgcccaa ttccacaaag acaactggct attcgggaca attcacctct 7081 tcacctgtgc atatgtctag cccaaatgct ccacaatcaa aacctgcaaa gcctaggtct 7141 ctagctcctt cctcttcttc tagtagtgtc tatagtatgt atactcaatc tactcattta 7201 acatctggct cttctagtag tgcttcttct gcctccacaa aattgacaaa tttaagctct 7261 ggctcctctc aaaacagaac agcagagtgg gtaaatcaac agagaagtct tagccctttc 7321 atgagtggcg cgcttaacat ctcacatgtc acgccaccct caagtagggc ttccagttct 7381 gggacggtct cgaccgtgcc caaggaagtt ttggactcct ggacgtctgc gtttaacaca 7441 cacagacagc cgctcttcgc acacctcaga gtgagggggg agtcacgtgt ttagtgaa //