Typing tool
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Typing tool
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Complete norovirus genomes
| KT779557 | GII.3 | |
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| GII.P16 |
ORF1: 5..5101
ORF2: 5082..6728
ORF3: 6728..7492
LOCUS KT779557 7549 bp RNA linear VRL 10-JAN-2019
DEFINITION Norovirus GII isolate Hu/GII.P16-GII.3/Omsk/O1370/2012/RUS,
complete genome.
ACCESSION KT779557
VERSION KT779557.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7549)
AUTHORS Zhirakovskaia,E., Tikunov,A., Tymentsev,A., Sokolov,S.,
Sedelnikova,D. and Tikunova,N.
TITLE Changing pattern of prevalence and genetic diversity of rotavirus,
norovirus, astrovirus, and bocavirus associated with childhood
diarrhea in Asian Russia, 2009-2012
JOURNAL Infect. Genet. Evol. 67, 167-182 (2019)
PUBMED 30414977
REFERENCE 2 (bases 1 to 7549)
AUTHORS Zhirakovskaya,E., Tikunov,A., Shlyakhtun,V. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (15-SEP-2015) Siberian Branch of the Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine
(ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7549
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.P16-GII.3/Omsk/O1370/2012/RUS"
/isolation_source="Homo sapiens; sex: M; age: 11 years"
/db_xref="taxon:122929"
/country="Russia: Omsk region"
/collection_date="May-2012"
/note="genotype: GII.P16-GII.3"
gene 5..5101
/gene="POL"
/note="encodes p48, NTPase, p22, VPg, 3CLpro, RdRp"
CDS 5..5101
/gene="POL"
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="ANR02567.1"
/translation="MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP
KQLAPRDNSQKPPRPPTPELVKRIPPPPPNGEEEEPVIRYEVKSGVSGLPELTTVPQP
DVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAV
SMAKVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLND
SWLNRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIG
KIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLS
TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRMRPVVVMISGKPGIGKTHLARE
VARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADT
CPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVE
KAKRDFPGQPDMWKDAFKPDFSHIRLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR
ASGLLHERMDEFELQGPTVTTFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVKT
MEELKQAIKNVIIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQVNNELAGALHHL
KHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPPLDQNESEAKEEA
PKSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEVKIRQRIFRPTRKQRKEERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPS
LFITSTHVIPAGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGT
VATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDC
GCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGP
GGAPKLSTKTKFWRSSNMPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPRPTVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWN
GETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKVYGKIKKRLLWGSDLS
TMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS
TQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFRVSINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTKLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLKE
YGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPN
HEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5082..6728
/gene="VP1"
CDS 5082..6728
/gene="VP1"
/note="ORF2; major viral capsid protein"
/codon_start=1
/product="capsid protein VP1"
/protein_id="ANR02568.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKVIFAAIPPNFPTDNLSAAQITMCPHVIVDVRQLEPINLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKIKPFTLPILTISEMSNSRFPVPIDSLHTSPTDNIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADAATPRLFNYHWHIQLDNLNGTPYDPAEDIPAP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTSGRFTPKLGSLEISTESGDFDQNQP
IRFTPVGIGVDNEADFQQWTLPDYSGQFTHNTNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGYMTIA
KSGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 6728..7492
/gene="VP2"
CDS 6728..7492
/gene="VP2"
/note="ORF3; minor viral capsid protein"
/codon_start=1
/product="capsid protein VP2"
/protein_id="ANR02569.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGAGAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQVDMIAIKQGVLTAGGFSPTDAARGAINAPITKVLDWSG
TRYWAPNATSTTSMSGGFTGQAVHRVTPNFKTNQAPKSTPSSGSSVSSSSTQLTNLSS
HSSGSSRSSGSTMVSSLPSSSRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSLD
TVSTVPKSVLDSWTSAFNTRRQPLFAHLRRRGESNI"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac cgttgccgtt gcttgcaaca acaacaacga
61 caaggaaaaa tcttcaggtg aaggcttatt cacaaatatg tcttccacct taaagaaagc
121 cctcggggcc cggcccaaac agcttgcccc gagggacaac tcacaaaagc ccccaagacc
181 accaactccc gagttggtta agaggatacc ccctccccca cctaatggtg aagaagaaga
241 accagtcatt aggtatgagg ttaagagtgg ggtctctggc ctgcccgagc tcacaacagt
301 cccccagccg gatgtggcca acacggcatt cagtgtccca ccgctaagcc tgagagaaaa
361 cagggaggcc aaggaaccgc tgacaggggc aatattagag atgtgggatg gagagatata
421 tcactatggc ctgtacgtgg agaaaggctt agtgttgggt gtgcacaaac cacctgcagc
481 tgtaagcatg gcaaaagtgg agctgacgcc tttgtcgttg tactggcgtg tggtctacac
541 cccccaatac ctcatctccc ctgaaactct caggaggctc aacggagagg cattccctta
601 caccgccttt gacaacaact gctatgcctt ttgctgctgg gtattagacc tcaatgattc
661 atggcttaac aggagaatgg tgcaaagaac aacaggcttc ttcagacctt accaagagtg
721 gaacagaaaa cctctgccta ctatggatga ctccaaaatc aagaaggtgg caaacatatt
781 cctgtgttca ttgtccacgt tgttcaccag acctataaaa gacctcatag gaaaaattaa
841 accattaaat atcttgaaca tcctggcaac gtgtgactgg acattcgccg gaatagtgga
901 gtctttgata ttactcgctg aactctttgg agttttctgg acacccccag atgtgtctgc
961 tatgatcgct cccttacttg gagactacga gttgcaaggg ccagaagacc tcgccgttga
1021 gctcgtgcct gtggtaatgg gagggattgg tctggtgttg ggattcacca aagagaaaat
1081 tggcaaaatg ttgtcctcag cagcatcaac gctcagggct tgtaaagatc ttggtgccta
1141 tggcttagag atactcaaat tggtcatgaa gtggttcttc ccaaagaaag aagaggccaa
1201 tgagctagcc atggtgagag ctatagagga tgctgtactg gatcttgagg caatagaaaa
1261 caatcacatg acaactttgc tgaaagacaa agacagccta gcaacctaca tgaaaacact
1321 ggacatggag gaggaaaaag ccagaagatt gtccacaaaa tctgcatccc ccgacatagt
1381 tgggacgatc aacgccctgc tggctcgaat agcagcggct aggtcactag tccacagggc
1441 caaggaggag ttatctagca ggatgagacc agtagttgtc atgatatctg gcaaaccagg
1501 gataggaaaa actcatttgg ccagggaggt ggcaagaaag gtggcatcca ctctcacagg
1561 ggatcaaaga gtcgggctca taccgagaaa tggtgtggac cattgggatg catataaagg
1621 tgagagagtc gtgctgtggg acgactatgg catgagcaac cccattcatg atgctctgcg
1681 catacaagaa ttggctgata cgtgtcccct taccttaaat tgtgacagaa ttgaaaataa
1741 gggaaaagtt tttgacagtg aagtcataat aattacaaca aaccttgcca atccagcccc
1801 acttgattat gtcaactttg aggcctgctc caggagaatt gacttcctgg tttacgccga
1861 ggcaccagaa gtagaaaagg caaaacgaga ctttcctggt caaccagata tgtggaagga
1921 cgccttcaag ccggactttt cacatatcag gttgcaactt gcacctcagg gcggctttga
1981 caagaatggc aacaccccac atggaaaagg agtgatgaag accctcacca ccggttccct
2041 gattgcccgt gcatcaggct tactgcatga gaggatggat gaatttgaac tccaaggccc
2101 cacagtcacc accttcaatt tcgaccggaa cagaatcacc gcattcagac aattggctgc
2161 agaaaacaag tatggattgg tggacaccat gagagttggc aatcaattaa aaggggtgaa
2221 aaccatggaa gaactcaaac aagcaatcaa aaatgtgatc atcaagaggt gccggatcat
2281 ctacggtggc tccacgtatg accttgaatc tgatggcaag ggcaaagttt tggtggaaaa
2341 ggttaagaac acctctgtac aggtcaacaa cgagttggcc ggagccctgc atcacctcaa
2401 acatgcccgg atcaggtact atgtcaaatg tgtgcaagaa gcagtctact ctatcataca
2461 aattgccggc gctgcatttg tcaccacacg cattgcacgc cgcatgaaca tacaagagct
2521 ttggtcgaag ccaccattag accaaaatga atcagaggct aaggaagagg cccccaagtc
2581 agaagatgac gagttcatca tatcttctaa ggacatcaag gaggaaggaa agaagggcaa
2641 aaacaaaact ggccgtggca agaaacacac tgcattctct agcaaaggct tgagcgatga
2701 ggagtatgac gagtacaaga ggataagaga agagagaaat gggaagtact ctatagagga
2761 gtatcttcaa gacagagaca ggtactatga ggaactcgcc atcgccaagg ccacggaaga
2821 agacttctgt gaggaggagg aggtcaaaat ccgtcagagg atcttccgtc ccaccaggaa
2881 acaaaggaag gaggagaggg ccacactagg gctagtaact ggttcagaaa tcagaaaaag
2941 aaaccctgat gacttcaaac ctaaagggaa actgtgggcc gatgacaaca gaagtgttga
3001 ctacaatgag aaactggact ttgaggcccc cccaagcata tggtctagga ttgtgagctt
3061 tggttctggc tggggcttct gggtatcacc aagcctgttc ataacatcaa ctcatgtaat
3121 tcctgcaggc ataacagagg catttggagt ccccatcaaa caaatccagg tccacaaatc
3181 aggtgaattt tgccggttca gattcccaaa accaattagg ccagatgtga caggaatgat
3241 cttggaagaa ggtgcgcctg agggtaccgt ggcaaccgtg ctcatcaaac gccctaccgg
3301 agagctcatg ccccttgcag ccagaatggg gacacacgca accatgaaaa ttcaaggccg
3361 tatggttggc ggacagatgg gtatgttgct cactggttca aatgctaaag gaatggattt
3421 gggaacaact cctggtgatt gtggctgtcc ctacatctac aaaaggggca atgactatat
3481 agtcattggg gtgcacacag cagcagcccg tggtggaaac accgtcatct gcgccacaca
3541 gggaagtgag ggtgaggcaa ctcttgaggg tggagatgac aaaggaacat actgtggggc
3601 acccattcta ggccctggag gggcaccaaa attgagcacc aaaaccaaat tttggaggtc
3661 atcgaacatg cctcttccac cagggacata tgagcctgcc tacctcggtg gccgtgaccc
3721 gcgtgttaag ggtgggccct ccttgcagca ggtaatgaga gaccagttga agccattcac
3781 tgagcccagg ggcaaacctc caagaccaac tgtgttggaa gcagccaaac aaaccatcat
3841 caatgtcctc gaacaaaccc tggaccctcc acaaaaatgg acatacgcac aggcgtgtgc
3901 ttcacttgac aaaaccacct ccagcgggca tccccaccac gtccgaaaga atgaattctg
3961 gaatggtgag accttcactg gtaagttggc agaccaagca tcaaaagcaa acctaatgtt
4021 tgaggaaggg aaacacatga caccagtgta tacagcagcc ctcaaggacg agctggtcaa
4081 gactgacaaa gtctatggaa agatcaagaa gagactgctc tggggctctg atttgtccac
4141 catgatccgg tgcgccaggt cctttggtgg gctcatggat gagatgaagg cacactgcat
4201 atcactccca gtccgagttg gcatgaacat gaatgaagat ggtccaataa tatttgagaa
4261 gcactccaga tacaagtacc actatgatgc agactactcc cgctgggatt caacacaaca
4321 gagggcagta ttagcagcag ccttggaaat catggtcagg ttctctgcag agccacaatt
4381 ggcacagata gtcgctgagg atctgttggc ccccagtgtg gtagatgtag gagactttag
4441 agtttcaata aatgaagggc tcccctctgg tgtgccatgc acttctcagt ggaattccat
4501 cgcacactgg ttgctaaccc tctgtgcctt gtctgaagtc accaaactgt cccctgacat
4561 tgtacaggca aattccatgt tctcatttta cggtgatgac gagattgtca gcaccgatat
4621 aaaattggac cctgaaaagt taaccaccaa attgaaggag tacggcctga agccaactcg
4681 cccagacaaa accgagggac ccctgatcat cagtgaggat ttgaacggac tcactttcct
4741 ccggaggacg gtgactcgtg acccagctgg ctggtttggg aaattggacc aaagttcaat
4801 attgaggcag atgtactgga ctagaggacc aaatcatgag gaccccaatg agacaatgat
4861 accccactct caaagaccca tacagctcat ggcactgctt ggtgaggcct cccttcacgg
4921 accctctttc tacagcaaaa ttagtaaatt ggtcataact gaactcaaag aaggtgggat
4981 ggacttttac gtgccaaggc aggaacccat gttcagatgg atgaggttct ctgacttgag
5041 cacgtgggag ggcgatcgca atctggctcc caattttgtg aatgaagatg gcgtcgaatg
5101 acgctgctcc atctaatgat ggtgccgccg gcctcgtacc agagatcaat aatgaggcaa
5161 tggcgctaga tccagtggcg ggcgcagcga tagcagcacc ccttactggt cagcaaaaca
5221 taatagatcc ctggattatg aataattttg tgcaagcacc tggtggtgag tttacagtgt
5281 cacctaggaa ctcccctggt gaagtacttc taaatttaga attaggccca gaaataaacc
5341 cctacctggc gcatcttgct aggatgtaca atggttatgc aggtgggttt gaggtgcagg
5401 tggtcctggc tggaaatgcg tttacagcag ggaaagtgat ctttgcagct atacccccca
5461 atttcccaac tgacaatttg agtgcagcgc agattacaat gtgtcctcat gtaattgtag
5521 atgtcaggca gttggaacca atcaacctcc cgatgcctga cgtccgcaac aatttcttcc
5581 attataatca aggttctgat tcgaggttac gcttaattgc aatgttgtat actcccctta
5641 gggcaaataa ttctggagat gatgttttca ctgtgtcatg tagggtgttg actaggccca
5701 gtcctgactt ctcattcaat ttcctcgtcc cgcccactgt ggaatcaaag ataaaacctt
5761 tcaccctccc tattttgacc atctctgaga tgtctaattc tagatttcca gtgccaattg
5821 actctctgca caccagtcca actgataaca ttgttgtcca gtgccaaaat gggcgcgtca
5881 cccttgatgg cgagctaatg ggcaccaccc aactcttgcc gagtcagata tgtgctttta
5941 ggggtgtgct caccagatca acaagcaggg ccagtgatca agctgacgca gcaaccccta
6001 gactcttcaa ctaccattgg cacatacaac tagacaacct aaatgggacc ccgtatgacc
6061 ctgcagagga cataccagct cctctgggga cgccagactt tcggggcaaa gtctttggcg
6121 tagccagcca gagaaaccct gacagcacaa caagggcaca tgaggcaaaa gtggatacaa
6181 catctggccg cttcacccca aaattgggct ccctagaaat atccactgaa tctggtgact
6241 ttgaccagaa tcaaccaata agattcaccc cagttggcat tggagttgac aatgaggcag
6301 actttcaaca atggacctta cctgattatt ccggtcagtt cacccacaac acgaatctgg
6361 ccccagctgt cgctcccaat tttcccggtg aacagcttct tttcttccgc tcacagttgc
6421 catcctctgg cgggcggtcc aatggcattc tagactgcct ggtcccccag gaatgggtcc
6481 aacacttcta ccaggaatcc gcccctgccc aaacgcaggt ggctctggtc aggtatgtca
6541 accctgatac tggtagggtg ttatttgagg ctaagctgca taagctaggc tacatgacca
6601 tagctaagag tggtgattct ccaataactg tacccccaaa tggatacttt aggtttgaat
6661 cttgggtgaa tcccttttac acattagccc ccatgggaac tgggaatggg cgtagaagga
6721 ttcaataatg gctggagcat ttatagcagg attggctggt gacatgctca caaacactgt
6781 agggtcttta gttaatgcag gggctggtgc tattaatcaa aaagttgatt ttgaaaataa
6841 taaatatcta caaaatgcat cctttaatca tgataaggag atgttaaatg cacaaattga
6901 ggcaactaag aggctacagg ttgacatgat tgctatcaaa caaggggttt tgaccgctgg
6961 cggtttctcc cccactgatg cagcccgtgg ggctattaac gcccccataa caaaagttct
7021 ggactggagt ggaaccaggt actgggcacc aaatgccacc tccacaactt caatgtcagg
7081 tggcttcaca ggtcaagctg tgcatagagt tacaccaaat tttaaaacca accaagcccc
7141 aaaatccacg cccagcagtg ggtcttcagt gagttcaagc tcaacccaac tcaccaactt
7201 gagctcacac tcatctgggt cttctcgatc cagcgggtcc acgatggtca gctcgttacc
7261 atcttccagt aggactagag actgggttaa ccaacagaat tttaatttgg aaccacacat
7321 gcctggatct ctcaggacag cttttgttac tccaccatct agtacagcct ctagcttaga
7381 cacggtctca accgtgccca agagtgtttt ggactcctgg acatctgcgt ttaacacgcg
7441 cagacagccg ctcttcgcac accttcgtag aaggggggag tcaaatattt agtgaaaaga
7501 ttattcttaa atttggtttg taattggatt taaattagaa tcttttaaa
//